Wall clock time and date at job start Tue Mar 31 2020 05:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45196 * 109.47157 * 2 1 4 4 C 1.34232 * 117.00177 * 179.97438 * 3 2 1 5 5 O 1.20825 * 119.99861 * 359.97438 * 4 3 2 6 6 C 1.50693 * 120.00129 * 180.02562 * 4 3 2 7 7 H 1.09006 * 109.62757 * 39.70504 * 6 4 3 8 8 C 1.51318 * 109.62473 * 279.13012 * 6 4 3 9 9 O 1.20764 * 121.00407 * 9.99319 * 8 6 4 10 10 C 1.51421 * 117.99195 * 190.01024 * 8 6 4 11 11 C 1.53383 * 108.11664 * 49.09618 * 10 8 6 12 12 C 1.53014 * 109.13638 * 307.53883 * 11 10 8 13 13 N 1.46792 * 109.89812 * 62.85069 * 12 11 10 14 14 C 1.46894 * 111.00077 * 170.54743 * 13 12 11 15 15 H 1.09004 * 109.47368 * 159.25884 * 14 13 12 16 16 C 1.50702 * 109.47232 * 279.25708 * 14 13 12 17 17 H 1.08000 * 120.00080 * 3.94286 * 16 14 13 18 18 C 1.37881 * 119.99904 * 183.66895 * 16 14 13 19 19 N 1.31508 * 120.00128 * 0.02562 * 18 16 14 20 20 Si 1.86799 * 119.99927 * 180.02562 * 18 16 14 21 21 H 1.48508 * 109.47048 * 59.99734 * 20 18 16 22 22 H 1.48491 * 109.47349 * 180.02562 * 20 18 16 23 23 H 1.48508 * 109.46887 * 300.00416 * 20 18 16 24 24 C 1.52999 * 109.47115 * 39.25739 * 14 13 12 25 25 C 1.53000 * 109.46998 * 64.25976 * 24 14 13 26 26 H 1.08997 * 109.47602 * 300.00463 * 1 2 3 27 27 H 1.09009 * 109.46786 * 60.00294 * 1 2 3 28 28 H 1.08996 * 109.47361 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47602 * 239.99537 * 2 1 3 30 30 H 1.09000 * 109.46917 * 119.99490 * 2 1 3 31 31 H 1.08992 * 109.73515 * 168.75321 * 10 8 6 32 32 H 1.09000 * 109.73546 * 289.44389 * 10 8 6 33 33 H 1.09001 * 109.52641 * 67.43832 * 11 10 8 34 34 H 1.08999 * 109.52874 * 187.56741 * 11 10 8 35 35 H 1.09003 * 109.39681 * 302.72587 * 12 11 10 36 36 H 1.09002 * 109.40156 * 182.98511 * 12 11 10 37 37 H 0.97001 * 120.00323 * 179.97438 * 19 18 16 38 38 H 1.09007 * 109.47035 * 184.25218 * 24 14 13 39 39 H 1.08993 * 109.46954 * 304.25800 * 24 14 13 40 40 H 1.09005 * 109.46989 * 281.34848 * 25 24 14 41 41 H 1.09001 * 109.47428 * 41.34512 * 25 24 14 42 42 H 1.09003 * 109.47361 * 161.34619 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0015 6 6 3.9207 2.9373 0.0012 7 1 3.3305 3.5774 0.6570 8 6 3.9065 3.4938 -1.4059 9 8 3.3196 2.9239 -2.2943 10 6 4.6506 4.7866 -1.6664 11 6 6.0561 4.6572 -1.0661 12 6 5.9389 4.2215 0.3960 13 7 5.3131 2.8960 0.4737 14 6 5.3903 2.3565 1.8378 15 1 4.6317 1.5843 1.9666 16 6 6.7561 1.7620 2.0663 17 1 7.5137 1.8391 1.3005 18 6 7.0402 1.1245 3.2554 19 7 6.1193 1.0347 4.1899 20 14 8.7334 0.3882 3.5391 21 1 9.7595 1.4582 3.4514 22 1 8.7825 -0.2363 4.8854 23 1 9.0042 -0.6431 2.5053 24 6 5.1487 3.4819 2.8457 25 6 3.7235 4.0142 2.6839 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 4.7234 4.9594 -2.7401 32 1 4.1238 5.6160 -1.1946 33 1 6.6234 3.9122 -1.6240 34 1 6.5657 5.6192 -1.1210 35 1 5.3290 4.9422 0.9407 36 1 6.9326 4.1795 0.8421 37 1 6.3190 0.5859 5.0263 38 1 5.2804 3.0980 3.8574 39 1 5.8601 4.2881 2.6674 40 1 3.6804 4.6814 1.8230 41 1 3.0390 3.1797 2.5314 42 1 3.4355 4.5607 3.5820 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255174483.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:11 Heat of formation + Delta-G solvation = -107.769569 kcal Electronic energy + Delta-G solvation = -24459.975326 eV Core-core repulsion = 21019.916215 eV Total energy + Delta-G solvation = -3440.059111 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.70329 -39.05476 -37.74346 -35.93831 -34.10859 -32.23827 -31.56901 -30.67851 -29.36471 -27.16816 -24.93471 -23.41785 -22.53820 -22.39881 -20.73143 -19.43763 -18.79183 -17.35851 -16.69449 -16.25139 -16.02088 -15.48404 -15.16769 -14.63254 -14.48777 -14.38227 -13.85166 -13.63863 -13.42111 -12.95795 -12.77390 -12.54535 -12.36476 -12.14008 -11.87860 -11.53374 -11.40990 -11.32498 -11.25909 -10.97586 -10.83999 -10.68509 -10.46366 -10.39457 -10.14158 -10.02866 -9.93091 -9.77804 -9.19664 -8.98161 -8.33957 -7.36900 -6.00453 -4.01766 2.01026 2.76023 2.96617 3.35007 3.39227 3.43392 4.21945 4.40043 4.69644 4.89002 5.02307 5.10617 5.12556 5.17456 5.28310 5.31848 5.44206 5.48642 5.63041 5.77757 5.84223 5.89816 5.91072 5.93001 5.96888 6.00873 6.06998 6.21362 6.43652 6.45653 6.62467 6.83451 6.86907 7.03472 7.16091 7.49235 7.53682 7.79315 8.01418 8.19879 8.35045 8.48274 9.01833 9.61428 11.07873 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.014076 B = 0.007369 C = 0.005817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.670333 B = 3798.785585 C = 4812.352505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.063 3.937 3 O -0.364 6.364 4 C 0.474 3.526 5 O -0.460 6.460 6 C 0.027 3.973 7 H 0.111 0.889 8 C 0.383 3.617 9 O -0.451 6.451 10 C -0.163 4.163 11 C -0.116 4.116 12 C 0.053 3.947 13 N -0.499 5.499 14 C 0.216 3.784 15 H 0.045 0.955 16 C -0.488 4.488 17 H 0.063 0.937 18 C 0.058 3.942 19 N -0.896 5.896 20 Si 0.898 3.102 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.277 1.277 24 C -0.155 4.155 25 C -0.159 4.159 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.090 0.910 32 H 0.097 0.903 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.040 0.960 36 H 0.097 0.903 37 H 0.261 0.739 38 H 0.096 0.904 39 H 0.047 0.953 40 H 0.039 0.961 41 H 0.045 0.955 42 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.245 7.206 -6.617 12.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.011 4.011 3 O -0.281 6.281 4 C 0.313 3.687 5 O -0.343 6.343 6 C -0.083 4.083 7 H 0.128 0.872 8 C 0.257 3.743 9 O -0.323 6.323 10 C -0.201 4.201 11 C -0.154 4.154 12 C -0.075 4.075 13 N -0.227 5.227 14 C 0.111 3.889 15 H 0.063 0.937 16 C -0.526 4.526 17 H 0.081 0.919 18 C -0.143 4.143 19 N -0.536 5.536 20 Si 0.726 3.274 21 H -0.203 1.203 22 H -0.215 1.215 23 H -0.203 1.203 24 C -0.194 4.194 25 C -0.216 4.216 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.095 0.905 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.109 0.891 32 H 0.116 0.884 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.058 0.942 36 H 0.116 0.884 37 H 0.070 0.930 38 H 0.115 0.885 39 H 0.066 0.934 40 H 0.058 0.942 41 H 0.064 0.936 42 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -7.122 6.144 -7.227 11.862 hybrid contribution 0.423 -0.089 0.945 1.039 sum -6.700 6.055 -6.282 11.001 Atomic orbital electron populations 1.21777 0.93038 1.02572 1.03233 1.22928 0.94890 0.80691 1.02596 1.86431 1.24894 1.32045 1.84769 1.22786 0.80374 0.91948 0.73554 1.90727 1.59839 1.41961 1.41730 1.22356 0.95818 0.92061 0.98069 0.87214 1.24592 0.75517 0.86260 0.87935 1.90404 1.35608 1.59513 1.46760 1.22342 0.98045 0.96255 1.03414 1.21709 0.94358 1.02135 0.97196 1.22190 1.01349 0.89355 0.94586 1.62439 1.07984 1.22767 1.29526 1.19531 0.99015 0.91733 0.78604 0.93689 1.20925 0.96691 1.34698 1.00307 0.91855 1.24900 0.97218 0.96091 0.96060 1.69880 1.33243 1.43780 1.06658 0.86560 0.84253 0.79498 0.77079 1.20338 1.21496 1.20260 1.22334 0.92385 0.98861 1.05822 1.22187 1.00125 0.99751 0.99510 0.91601 0.91709 0.90527 0.91509 0.91156 0.89128 0.88437 0.90483 0.90430 0.94167 0.88449 0.92974 0.88525 0.93399 0.94248 0.93566 0.93816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 10.29 37.16 0.38 -1.34 16 2 C 0.06 1.00 6.19 37.16 0.23 1.23 16 3 O -0.36 -6.87 10.22 -39.26 -0.40 -7.27 16 4 C 0.47 10.20 5.39 36.00 0.19 10.39 16 5 O -0.46 -11.53 15.13 -18.75 -0.28 -11.81 16 6 C 0.03 0.51 2.10 -69.61 -0.15 0.36 16 7 H 0.11 1.90 4.12 -51.93 -0.21 1.69 16 8 C 0.38 6.52 6.72 -28.38 -0.19 6.33 16 9 O -0.45 -8.77 16.95 6.00 0.10 -8.67 16 10 C -0.16 -2.03 6.24 -27.33 -0.17 -2.20 16 11 C -0.12 -1.51 6.13 -26.53 -0.16 -1.68 16 12 C 0.05 0.87 3.89 -3.88 -0.02 0.86 16 13 N -0.50 -10.31 4.00 -222.43 -0.89 -11.20 16 14 C 0.22 5.23 1.32 -68.87 -0.09 5.14 16 15 H 0.05 1.25 5.91 -51.93 -0.31 0.95 16 16 C -0.49 -13.19 8.23 -34.44 -0.28 -13.47 16 17 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 18 C 0.06 1.59 5.30 -17.82 -0.09 1.50 16 19 N -0.90 -25.27 11.58 55.43 0.64 -24.63 16 20 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 C -0.15 -3.35 4.74 -26.73 -0.13 -3.48 16 25 C -0.16 -2.85 8.10 37.16 0.30 -2.54 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 28 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.07 1.05 8.13 -51.93 -0.42 0.63 16 30 H 0.07 1.16 8.13 -51.93 -0.42 0.73 16 31 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.04 0.61 5.29 -51.93 -0.27 0.33 16 36 H 0.10 1.73 7.41 -51.93 -0.38 1.34 16 37 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 38 H 0.10 2.42 6.28 -51.92 -0.33 2.09 16 39 H 0.05 0.97 6.15 -51.93 -0.32 0.65 16 40 H 0.04 0.61 5.05 -51.93 -0.26 0.34 16 41 H 0.05 0.87 7.35 -51.93 -0.38 0.49 16 42 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 328.46 15.07 4.95 4.95 Total: -1.00 -31.97 328.46 -7.32 -39.29 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -6.24 Total: 1.77 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: -0.17 Total: 1.09 kcal Atomic # 7 Polarization: -35.58 SS G_CDS: -0.25 Total: -35.83 kcal Atomic # 8 Polarization: -27.17 SS G_CDS: -0.58 Total: -27.75 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.97 -7.32 -39.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255174483.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.483 kcal (2) G-P(sol) polarization free energy of solvation -31.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds