Wall clock time and date at job start Tue Mar 31 2020 06:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.49849 * 2 1 4 4 C 1.53188 * 109.49646 * 120.06363 * 2 1 3 5 5 N 1.46926 * 108.77684 * 65.35140 * 4 2 1 6 6 C 1.34781 * 120.62983 * 233.58996 * 5 4 2 7 7 O 1.21282 * 119.99659 * 359.97438 * 6 5 4 8 8 C 1.50695 * 119.99970 * 179.97438 * 6 5 4 9 9 C 1.53000 * 109.47146 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.47112 * 179.97438 * 9 8 6 11 11 C 1.50701 * 109.46898 * 180.02562 * 10 9 8 12 12 H 1.08001 * 120.00186 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99852 * 180.02562 * 11 10 9 14 14 N 1.31513 * 119.99989 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 120.00007 * 180.02562 * 13 11 10 16 16 H 1.48507 * 109.47091 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47046 * 119.99673 * 15 13 11 18 18 H 1.48493 * 109.47255 * 240.00199 * 15 13 11 19 19 C 1.46922 * 118.74304 * 53.60410 * 5 4 2 20 20 C 1.53194 * 108.77483 * 306.39831 * 19 5 4 21 21 C 1.53034 * 109.31582 * 54.62871 * 20 19 5 22 22 H 1.08999 * 109.45694 * 58.65926 * 21 20 19 23 23 C 1.50703 * 109.46143 * 178.61580 * 21 20 19 24 24 O 1.20815 * 119.99744 * 120.07287 * 23 21 20 25 25 O 1.34229 * 119.99965 * 300.06838 * 23 21 20 26 26 H 1.09000 * 109.46996 * 300.00101 * 1 2 3 27 27 H 1.09004 * 109.46831 * 60.00032 * 1 2 3 28 28 H 1.09001 * 109.47236 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.58695 * 185.13246 * 4 2 1 30 30 H 1.08993 * 109.59198 * 305.56175 * 4 2 1 31 31 H 1.09000 * 109.47506 * 299.99870 * 8 6 5 32 32 H 1.09006 * 109.47150 * 59.99947 * 8 6 5 33 33 H 1.08997 * 109.47190 * 299.99839 * 9 8 6 34 34 H 1.09002 * 109.47002 * 59.99913 * 9 8 6 35 35 H 1.09000 * 109.47474 * 299.99930 * 10 9 8 36 36 H 1.08993 * 109.47348 * 60.00321 * 10 9 8 37 37 H 0.96999 * 119.99614 * 180.02562 * 14 13 11 38 38 H 1.09000 * 109.58539 * 66.17629 * 19 5 4 39 39 H 1.08999 * 109.59236 * 186.60457 * 19 5 4 40 40 H 1.09002 * 109.49617 * 174.58379 * 20 19 5 41 41 H 1.08999 * 109.49482 * 294.67589 * 20 19 5 42 42 H 0.96698 * 117.00015 * 180.02562 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7234 1.2498 5 7 1.6522 -2.1380 1.1698 6 6 0.9754 -2.7221 2.1784 7 8 0.6822 -2.0793 3.1642 8 6 0.5829 -4.1738 2.0812 9 6 -0.1689 -4.5848 3.3487 10 6 -0.5679 -6.0585 3.2498 11 6 -1.3090 -6.4632 4.4980 12 1 -1.4789 -5.7413 5.2832 13 6 -1.7703 -7.7551 4.6377 14 7 -1.5639 -8.6340 3.6814 15 14 -2.6896 -8.2565 6.1846 16 1 -2.7896 -7.0918 7.1005 17 1 -4.0529 -8.7201 5.8219 18 1 -1.9565 -9.3562 6.8615 19 6 2.0153 -2.9038 -0.0303 20 6 1.5043 -2.1559 -1.2658 21 6 2.0414 -0.7230 -1.2481 22 1 3.1311 -0.7439 -1.2348 23 6 1.5685 0.0056 -2.4796 24 8 0.8921 1.0007 -2.3703 25 8 1.8989 -0.4509 -3.6979 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 3.1274 -0.6455 1.2985 30 1 1.6003 -0.2729 2.1389 31 1 -0.0605 -4.3190 1.2135 32 1 1.4786 -4.7860 1.9758 33 1 0.4749 -4.4398 4.2162 34 1 -1.0646 -3.9726 3.4546 35 1 -1.2119 -6.2032 2.3823 36 1 0.3274 -6.6710 3.1438 37 1 -1.8887 -9.5427 3.7795 38 1 3.0993 -3.0035 -0.0860 39 1 1.5572 -3.8919 0.0142 40 1 1.8499 -2.6629 -2.1667 41 1 0.4146 -2.1362 -1.2542 42 1 1.5726 0.0502 -4.4578 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333137536.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:54 Heat of formation + Delta-G solvation = -149.655689 kcal Electronic energy + Delta-G solvation = -22708.126188 eV Core-core repulsion = 19266.250758 eV Total energy + Delta-G solvation = -3441.875429 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.23532 -39.89076 -37.72141 -36.46670 -34.25918 -33.66410 -32.25797 -31.78962 -28.27523 -27.65563 -26.19686 -23.76867 -23.27897 -22.39948 -20.61393 -19.57490 -18.65399 -18.40261 -17.32267 -16.67079 -16.22394 -15.98687 -15.64654 -15.55554 -14.89877 -14.44530 -14.37486 -13.85695 -13.79348 -13.41080 -13.18444 -12.80252 -12.31135 -12.19041 -12.15167 -11.96199 -11.81368 -11.63245 -11.37544 -11.27634 -10.92986 -10.88050 -10.81751 -10.56923 -10.51194 -10.49651 -9.66880 -9.62886 -9.25134 -8.99572 -8.67461 -8.31667 -5.97269 -3.98351 1.83556 2.62877 2.89320 3.02550 3.34224 3.41554 3.47469 4.13073 4.26398 4.49791 4.53869 4.65867 4.83265 4.91666 4.95297 5.12615 5.24811 5.31697 5.37257 5.39039 5.48343 5.55438 5.65148 5.69370 5.70665 5.77910 5.89288 5.92458 6.10543 6.23951 6.32206 6.49977 6.73309 6.94097 7.16884 7.43979 7.53902 7.71877 7.84363 8.03658 8.40502 8.47959 9.08984 9.65675 11.14273 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.033082 B = 0.003023 C = 0.002920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.187598 B = 9258.631613 C = 9585.101188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.089 4.089 3 H 0.088 0.912 4 C 0.116 3.884 5 N -0.622 5.622 6 C 0.517 3.483 7 O -0.535 6.535 8 C -0.138 4.138 9 C -0.095 4.095 10 C 0.020 3.980 11 C -0.517 4.517 12 H 0.056 0.944 13 C 0.055 3.945 14 N -0.898 5.898 15 Si 0.891 3.109 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.284 1.284 19 C 0.109 3.891 20 C -0.131 4.131 21 C -0.074 4.074 22 H 0.111 0.889 23 C 0.483 3.517 24 O -0.508 6.508 25 O -0.516 6.516 26 H 0.058 0.942 27 H 0.073 0.927 28 H 0.056 0.944 29 H 0.066 0.934 30 H 0.099 0.901 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.015 0.985 36 H 0.016 0.984 37 H 0.259 0.741 38 H 0.073 0.927 39 H 0.099 0.901 40 H 0.090 0.910 41 H 0.080 0.920 42 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.723 15.937 -15.957 24.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.109 4.109 3 H 0.106 0.894 4 C -0.007 4.007 5 N -0.357 5.357 6 C 0.307 3.693 7 O -0.410 6.410 8 C -0.178 4.178 9 C -0.133 4.133 10 C -0.017 4.017 11 C -0.555 4.555 12 H 0.075 0.925 13 C -0.145 4.145 14 N -0.538 5.538 15 Si 0.719 3.281 16 H -0.197 1.197 17 H -0.211 1.211 18 H -0.211 1.211 19 C -0.014 4.014 20 C -0.169 4.169 21 C -0.094 4.094 22 H 0.129 0.871 23 C 0.325 3.675 24 O -0.396 6.396 25 O -0.328 6.328 26 H 0.077 0.923 27 H 0.092 0.908 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.117 0.883 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.034 0.966 36 H 0.034 0.966 37 H 0.069 0.931 38 H 0.091 0.909 39 H 0.117 0.883 40 H 0.108 0.892 41 H 0.098 0.902 42 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 10.477 16.148 -15.067 24.445 hybrid contribution -0.639 -0.017 0.058 0.642 sum 9.839 16.131 -15.009 24.131 Atomic orbital electron populations 1.22038 0.93814 1.02391 1.03151 1.21395 0.97897 0.99307 0.92253 0.89371 1.21586 0.99272 0.81418 0.98413 1.48222 1.57804 1.10886 1.18818 1.21268 0.75993 0.90435 0.81638 1.90669 1.53851 1.65625 1.30899 1.21876 1.02240 0.90650 1.03000 1.21455 0.98619 0.99669 0.93579 1.19131 0.96373 0.88985 0.97171 1.21316 1.35189 0.95700 1.03297 0.92537 1.25020 0.96316 0.96719 0.96479 1.69971 1.46970 1.04059 1.32754 0.86545 0.79532 0.78530 0.83484 1.19679 1.21051 1.21051 1.21728 1.00558 0.95872 0.83248 1.22015 1.02547 0.92809 0.99552 1.21104 1.02671 0.96164 0.89411 0.87147 1.23531 0.76565 0.82685 0.84706 1.90688 1.35918 1.25936 1.87065 1.84542 1.72985 1.58366 1.16939 0.92328 0.90818 0.92459 0.91581 0.88298 0.89428 0.89361 0.92704 0.92737 0.96639 0.96612 0.93143 0.90925 0.88287 0.89172 0.90176 0.73217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.75 8.40 37.16 0.31 -1.44 16 2 C -0.09 -0.81 2.35 -90.50 -0.21 -1.03 16 3 H 0.09 0.77 8.07 -51.93 -0.42 0.35 16 4 C 0.12 1.19 5.83 -3.71 -0.02 1.17 16 5 N -0.62 -7.20 2.41 -172.78 -0.42 -7.62 16 6 C 0.52 8.19 7.70 -10.99 -0.08 8.10 16 7 O -0.53 -10.57 15.40 5.56 0.09 -10.49 16 8 C -0.14 -2.24 4.05 -27.89 -0.11 -2.35 16 9 C -0.10 -2.05 4.44 -26.73 -0.12 -2.17 16 10 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 11 C -0.52 -14.95 9.11 -34.44 -0.31 -15.27 16 12 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 13 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 14 N -0.90 -27.00 13.29 55.43 0.74 -26.27 16 15 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 16 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 18 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 19 C 0.11 0.90 6.34 -3.71 -0.02 0.88 16 20 C -0.13 -0.95 4.96 -26.61 -0.13 -1.09 16 21 C -0.07 -0.55 2.37 -91.73 -0.22 -0.77 16 22 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 23 C 0.48 4.04 7.34 36.01 0.26 4.31 16 24 O -0.51 -5.76 14.51 -18.74 -0.27 -6.03 16 25 O -0.52 -3.13 13.30 -39.25 -0.52 -3.66 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.07 0.87 5.65 -51.93 -0.29 0.57 16 28 H 0.06 0.68 5.98 -51.93 -0.31 0.37 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.10 1.23 7.00 -51.93 -0.36 0.86 16 31 H 0.09 1.29 7.69 -51.93 -0.40 0.89 16 32 H 0.09 1.29 7.94 -51.93 -0.41 0.88 16 33 H 0.05 1.23 8.10 -51.93 -0.42 0.81 16 34 H 0.05 1.23 8.10 -51.93 -0.42 0.81 16 35 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.10 0.82 5.93 -51.93 -0.31 0.51 16 40 H 0.09 0.52 8.08 -51.93 -0.42 0.10 16 41 H 0.08 0.69 6.34 -51.93 -0.33 0.36 16 42 H 0.41 0.94 9.10 45.56 0.41 1.35 16 LS Contribution 335.97 15.07 5.06 5.06 Total: -1.00 -35.34 335.97 -7.00 -42.34 By element: Atomic # 1 Polarization: 3.16 SS G_CDS: -5.76 Total: -2.60 kcal Atomic # 6 Polarization: -6.85 SS G_CDS: -0.90 Total: -7.75 kcal Atomic # 7 Polarization: -34.21 SS G_CDS: 0.32 Total: -33.89 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: -0.71 Total: -20.17 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -35.34 -7.00 -42.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333137536.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.317 kcal (2) G-P(sol) polarization free energy of solvation -35.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds