Wall clock time and date at job start Tue Mar 31 2020 06:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34233 * 117.00152 * 2 1 4 4 O 1.20823 * 119.99733 * 359.97438 * 3 2 1 5 5 C 1.50692 * 119.99795 * 180.02562 * 3 2 1 6 6 H 1.09004 * 112.85580 * 311.19220 * 5 3 2 7 7 C 1.53784 * 113.69212 * 82.46334 * 5 3 2 8 8 C 1.53781 * 87.08018 * 139.99081 * 7 5 3 9 9 H 1.09003 * 113.69451 * 89.13469 * 8 7 5 10 10 C 1.50708 * 113.61223 * 220.01742 * 8 7 5 11 11 O 1.21281 * 119.99944 * 97.49705 * 10 8 7 12 12 N 1.34774 * 120.00400 * 277.49911 * 10 8 7 13 13 C 1.46491 * 120.00401 * 179.97438 * 12 10 8 14 14 C 1.50702 * 109.46957 * 89.99834 * 13 12 10 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99942 * 179.72213 * 14 13 12 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 13 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 13 19 19 H 1.48501 * 109.47188 * 90.00793 * 18 16 14 20 20 H 1.48501 * 109.47085 * 210.00372 * 18 16 14 21 21 H 1.48498 * 109.47634 * 330.00608 * 18 16 14 22 22 C 1.46512 * 119.99637 * 359.97438 * 12 10 8 23 23 C 1.53001 * 109.46593 * 120.00214 * 22 12 10 24 24 C 1.52991 * 109.47034 * 240.00082 * 22 12 10 25 25 C 1.53778 * 87.08326 * 334.56428 * 8 7 5 26 26 H 1.09002 * 109.46969 * 300.00285 * 1 2 3 27 27 H 1.09001 * 109.47042 * 59.99850 * 1 2 3 28 28 H 1.09000 * 109.47435 * 180.02562 * 1 2 3 29 29 H 1.08994 * 113.61616 * 25.44262 * 7 5 3 30 30 H 1.09001 * 113.61326 * 254.53526 * 7 5 3 31 31 H 1.09004 * 109.47166 * 330.00100 * 13 12 10 32 32 H 1.08994 * 109.47507 * 209.99806 * 13 12 10 33 33 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 34 34 H 1.08999 * 109.46921 * 0.02562 * 22 12 10 35 35 H 1.08992 * 109.47517 * 60.00419 * 23 22 12 36 36 H 1.09004 * 109.46945 * 179.97438 * 23 22 12 37 37 H 1.09005 * 109.47151 * 299.99693 * 23 22 12 38 38 H 1.08996 * 109.47416 * 59.99958 * 24 22 12 39 39 H 1.09000 * 109.47338 * 180.02562 * 24 22 12 40 40 H 1.09006 * 109.47309 * 299.99889 * 24 22 12 41 41 H 1.08998 * 113.60807 * 139.97954 * 25 8 7 42 42 H 1.08989 * 113.61903 * 270.88475 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 4.0240 0.6361 0.7550 7 6 4.1925 1.1229 -1.3969 8 6 5.1820 2.2263 -0.9869 9 1 6.0820 1.8492 -0.5011 10 6 5.4805 3.2096 -2.0893 11 8 4.8908 4.2684 -2.1336 12 7 6.4028 2.9123 -3.0261 13 6 6.6925 3.8679 -4.0980 14 6 7.8005 4.7915 -3.6616 15 1 8.2447 4.6778 -2.6838 16 6 8.2514 5.7778 -4.5132 17 7 7.7107 5.9160 -5.7040 18 14 9.6300 6.9176 -3.9752 19 1 10.9376 6.3307 -4.3636 20 1 9.4653 8.2386 -4.6334 21 1 9.5831 7.0899 -2.5010 22 6 7.1156 1.6334 -2.9723 23 6 6.8441 0.8441 -4.2546 24 6 8.6177 1.8920 -2.8409 25 6 4.1078 2.7142 -0.0006 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 3.5257 1.4140 -2.2085 30 1 4.6630 0.1536 -1.5613 31 1 5.7980 4.4513 -4.3163 32 1 7.0012 3.3275 -4.9928 33 1 8.0277 6.6101 -6.3030 34 1 6.7686 1.0600 -2.1127 35 1 7.1908 1.4173 -5.1144 36 1 7.3748 -0.1072 -4.2149 37 1 5.7738 0.6599 -4.3482 38 1 8.8111 2.4544 -1.9275 39 1 9.1481 0.9405 -2.8014 40 1 8.9644 2.4653 -3.7008 41 1 4.5100 3.0293 0.9622 42 1 3.4178 3.4402 -0.4304 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335756513.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:54 Heat of formation + Delta-G solvation = -105.962514 kcal Electronic energy + Delta-G solvation = -23167.304496 eV Core-core repulsion = 19727.323745 eV Total energy + Delta-G solvation = -3439.980751 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.98278 -39.61092 -37.52272 -36.31713 -35.78456 -32.78992 -30.79948 -29.09171 -27.81169 -26.76203 -26.20623 -25.72106 -23.31708 -21.94580 -20.99186 -19.61072 -18.42580 -17.48539 -17.10942 -16.47464 -16.41768 -16.10880 -15.35905 -15.05629 -14.36805 -14.14771 -13.65440 -13.44646 -13.39978 -13.13414 -12.62841 -12.51493 -12.33554 -12.22719 -11.92717 -11.74972 -11.59336 -11.32348 -11.13564 -11.04119 -10.94886 -10.89517 -10.81470 -10.55167 -10.46477 -10.36869 -10.33611 -9.97676 -9.51408 -8.79639 -8.39366 -7.61213 -6.00683 -4.03799 2.09947 2.58911 3.31239 3.36264 3.39163 3.44380 3.94605 4.32563 4.39053 4.47049 4.66947 4.73876 4.91323 4.93616 4.99992 5.20436 5.28190 5.33242 5.36957 5.46503 5.57844 5.60109 5.68415 5.73111 5.84987 6.01683 6.03209 6.17376 6.25352 6.28404 6.37925 6.45128 6.61546 6.97387 7.15050 7.50673 7.61215 7.66563 7.96423 8.28755 8.49265 8.95096 9.15025 9.60260 11.07461 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.025459 B = 0.004088 C = 0.003838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.547777 B = 6847.740844 C = 7293.681939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.360 6.360 3 C 0.469 3.531 4 O -0.500 6.500 5 C -0.112 4.112 6 H 0.126 0.874 7 C -0.101 4.101 8 C -0.137 4.137 9 H 0.114 0.886 10 C 0.514 3.486 11 O -0.537 6.537 12 N -0.590 5.590 13 C 0.245 3.755 14 C -0.518 4.518 15 H 0.058 0.942 16 C 0.059 3.941 17 N -0.896 5.896 18 Si 0.895 3.105 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.274 1.274 22 C 0.134 3.866 23 C -0.162 4.162 24 C -0.158 4.158 25 C -0.096 4.096 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.099 0.901 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.040 0.960 32 H 0.034 0.966 33 H 0.262 0.738 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.058 0.942 37 H 0.052 0.948 38 H 0.053 0.947 39 H 0.048 0.952 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.642 -16.543 9.996 20.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.277 6.277 3 C 0.312 3.688 4 O -0.386 6.386 5 C -0.131 4.131 6 H 0.144 0.856 7 C -0.139 4.139 8 C -0.159 4.159 9 H 0.132 0.868 10 C 0.300 3.700 11 O -0.415 6.415 12 N -0.322 5.322 13 C 0.126 3.874 14 C -0.557 4.557 15 H 0.076 0.924 16 C -0.142 4.142 17 N -0.535 5.535 18 Si 0.723 3.277 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.199 1.199 22 C 0.029 3.971 23 C -0.220 4.220 24 C -0.216 4.216 25 C -0.134 4.134 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.118 0.882 29 H 0.109 0.891 30 H 0.106 0.894 31 H 0.058 0.942 32 H 0.052 0.948 33 H 0.072 0.928 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.099 0.901 41 H 0.099 0.901 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -7.173 -15.554 9.770 19.719 hybrid contribution 0.672 0.657 0.228 0.966 sum -6.502 -14.897 9.997 19.083 Atomic orbital electron populations 1.23251 0.76679 1.03493 1.02580 1.86522 1.23202 1.33777 1.84220 1.23709 0.91844 0.81206 0.72079 1.90688 1.66904 1.36399 1.44606 1.22596 0.86934 1.02030 1.01535 0.85569 1.22811 0.97302 0.99186 0.94634 1.22710 0.98739 0.97049 0.97370 0.86832 1.19993 0.80181 0.87096 0.82756 1.90679 1.50959 1.24985 1.74832 1.48308 1.37321 1.18047 1.28495 1.19233 0.97081 0.86804 0.84265 1.21443 1.18074 1.14908 1.01261 0.92378 1.24931 0.97089 0.97250 0.94953 1.69935 1.42094 1.33749 1.07721 0.86547 0.82034 0.80315 0.78833 1.20737 1.21196 1.19938 1.20994 0.93263 0.85066 0.97772 1.22161 1.01279 0.99555 0.99000 1.22149 0.94734 1.00631 1.04066 1.22858 0.96989 0.93809 0.99733 0.92010 0.91879 0.88229 0.89093 0.89388 0.94155 0.94832 0.92835 0.90635 0.91368 0.92322 0.92925 0.92762 0.93316 0.90101 0.90144 0.87069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 101.05 1.07 1.35 16 2 O -0.36 -4.00 10.57 -39.27 -0.41 -4.41 16 3 C 0.47 6.08 7.49 36.00 0.27 6.35 16 4 O -0.50 -8.14 15.65 -18.75 -0.29 -8.44 16 5 C -0.11 -1.23 4.26 -90.96 -0.39 -1.62 16 6 H 0.13 0.99 8.14 -51.93 -0.42 0.57 16 7 C -0.10 -1.18 6.85 -25.92 -0.18 -1.36 16 8 C -0.14 -1.95 2.71 -90.96 -0.25 -2.19 16 9 H 0.11 1.33 7.30 -51.93 -0.38 0.95 16 10 C 0.51 10.52 7.20 -10.98 -0.08 10.44 16 11 O -0.54 -13.67 15.48 5.56 0.09 -13.58 16 12 N -0.59 -12.10 2.39 -167.47 -0.40 -12.50 16 13 C 0.25 6.29 4.59 -5.20 -0.02 6.27 16 14 C -0.52 -14.35 7.83 -34.44 -0.27 -14.62 16 15 H 0.06 1.61 7.63 -52.49 -0.40 1.21 16 16 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 17 N -0.90 -26.53 13.29 55.43 0.74 -25.80 16 18 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 21 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 22 C 0.13 2.08 3.15 -67.93 -0.21 1.87 16 23 C -0.16 -2.29 9.17 37.16 0.34 -1.94 16 24 C -0.16 -2.52 8.47 37.15 0.31 -2.20 16 25 C -0.10 -1.34 6.73 -25.92 -0.17 -1.52 16 26 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 27 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 28 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.09 1.23 8.05 -51.93 -0.42 0.81 16 30 H 0.09 0.78 8.07 -51.93 -0.42 0.36 16 31 H 0.04 1.19 7.42 -51.93 -0.39 0.81 16 32 H 0.03 0.87 6.43 -51.93 -0.33 0.54 16 33 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 34 H 0.08 0.95 5.41 -51.93 -0.28 0.66 16 35 H 0.07 1.12 6.66 -51.93 -0.35 0.77 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.08 1.55 6.92 -51.93 -0.36 1.19 16 41 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 42 H 0.11 1.95 6.73 -51.93 -0.35 1.60 16 LS Contribution 344.87 15.07 5.20 5.20 Total: -1.00 -34.48 344.87 -6.40 -40.88 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -6.61 Total: -0.56 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: 0.32 Total: 2.40 kcal Atomic # 7 Polarization: -38.64 SS G_CDS: 0.34 Total: -38.30 kcal Atomic # 8 Polarization: -25.81 SS G_CDS: -0.62 Total: -26.44 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.48 -6.40 -40.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335756513.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.086 kcal (2) G-P(sol) polarization free energy of solvation -34.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds