Wall clock time and date at job start Tue Mar 31 2020 06:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46832 * 2 1 4 4 C 1.50705 * 109.47314 * 119.99273 * 2 1 3 5 5 H 1.07997 * 119.99888 * 120.00066 * 4 2 1 6 6 C 1.37871 * 120.00154 * 300.00678 * 4 2 1 7 7 N 1.31515 * 120.00177 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 120.00071 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.47279 * 59.99513 * 8 6 4 10 10 H 1.48504 * 109.47288 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.46634 * 299.99397 * 8 6 4 12 12 N 1.46495 * 109.46996 * 239.99534 * 2 1 3 13 13 C 1.46496 * 120.00289 * 299.99484 * 12 2 1 14 14 C 1.34780 * 119.99549 * 119.99991 * 12 2 1 15 15 O 1.21280 * 120.00445 * 5.36163 * 14 12 2 16 16 C 1.50705 * 119.99660 * 185.35733 * 14 12 2 17 17 H 1.09000 * 110.47243 * 309.73770 * 16 14 12 18 18 O 1.43924 * 110.42042 * 187.29815 * 16 14 12 19 19 C 1.43766 * 109.64148 * 215.17937 * 18 16 14 20 20 C 1.53670 * 106.82805 * 1.34431 * 19 18 16 21 21 H 1.08995 * 109.74109 * 267.26642 * 20 19 18 22 22 C 1.51246 * 112.32668 * 144.99143 * 20 19 18 23 23 O 1.42699 * 111.49824 * 294.99907 * 22 20 19 24 24 C 1.43208 * 112.74743 * 299.55642 * 23 22 20 25 25 C 1.53471 * 109.09988 * 64.62125 * 24 23 22 26 26 C 1.53094 * 110.07394 * 301.19686 * 25 24 23 27 27 H 1.08999 * 112.76764 * 282.42393 * 26 25 24 28 28 H 1.09005 * 109.46902 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46984 * 300.00275 * 1 2 3 30 30 H 1.08994 * 109.47219 * 60.00335 * 1 2 3 31 31 H 0.96995 * 120.00564 * 180.02562 * 7 6 4 32 32 H 1.08995 * 109.47599 * 273.91802 * 13 12 2 33 33 H 1.08999 * 109.46899 * 33.91735 * 13 12 2 34 34 H 1.09000 * 109.46963 * 153.91262 * 13 12 2 35 35 H 1.08999 * 109.99157 * 120.69433 * 19 18 16 36 36 H 1.09007 * 109.98732 * 242.00442 * 19 18 16 37 37 H 1.09004 * 109.06979 * 55.51237 * 22 20 19 38 38 H 1.08995 * 109.07465 * 174.47411 * 22 20 19 39 39 H 1.09006 * 109.64072 * 184.60266 * 24 23 22 40 40 H 1.09006 * 109.64125 * 305.22815 * 24 23 22 41 41 H 1.09001 * 110.14023 * 180.60034 * 25 24 23 42 42 H 1.08998 * 108.85228 * 60.98094 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2306 5 1 2.6533 -1.5883 1.1316 6 6 1.6993 -0.2392 2.4828 7 7 0.9435 0.8303 2.6034 8 14 2.3226 -1.1192 4.0081 9 1 3.8075 -1.1185 4.0078 10 1 1.8279 -0.4188 5.2206 11 1 1.8281 -2.5195 4.0083 12 7 2.0183 -0.6907 -1.1961 13 6 1.6645 -2.0933 -1.4278 14 6 2.7932 -0.0357 -2.0833 15 8 3.1665 1.0934 -1.8450 16 6 3.1957 -0.7063 -3.3715 17 1 3.6071 -1.6961 -3.1736 18 8 4.1518 0.1022 -4.0811 19 6 3.9321 -0.0202 -5.4966 20 6 2.7250 -0.9532 -5.6804 21 1 3.0687 -1.9806 -5.8007 22 6 1.8703 -0.5604 -6.8648 23 8 1.2622 0.7158 -6.6704 24 6 0.4041 0.7516 -5.5244 25 6 1.2463 0.5364 -4.2596 26 6 1.9757 -0.8074 -4.3362 27 1 1.3246 -1.6538 -4.1174 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 0.7094 1.1620 3.4843 32 1 2.3770 -2.7376 -0.9129 33 1 0.6614 -2.2828 -1.0458 34 1 1.6917 -2.3029 -2.4971 35 1 3.7159 0.9579 -5.9262 36 1 4.8122 -0.4510 -5.9743 37 1 2.4940 -0.5254 -7.7581 38 1 1.0906 -1.3089 -7.0052 39 1 -0.0949 1.7192 -5.4703 40 1 -0.3382 -0.0433 -5.5976 41 1 0.6074 0.5500 -3.3765 42 1 1.9787 1.3401 -4.1832 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335776895.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:39 Heat of formation + Delta-G solvation = -117.631516 kcal Electronic energy + Delta-G solvation = -24235.810485 eV Core-core repulsion = 20795.323728 eV Total energy + Delta-G solvation = -3440.486757 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.05142 -38.73107 -37.36736 -35.28144 -33.33111 -32.65416 -31.92456 -29.90842 -28.18442 -26.21114 -25.58764 -25.22454 -23.73477 -23.09235 -20.72147 -19.70005 -18.34027 -17.12913 -16.58164 -16.45186 -16.02107 -15.94967 -15.51254 -15.16114 -14.91105 -14.46548 -14.13736 -13.58768 -13.27258 -12.93226 -12.67068 -12.64675 -12.53774 -12.23964 -12.09172 -11.71181 -11.54698 -11.43001 -11.07624 -11.01639 -10.82623 -10.74929 -10.67123 -10.32895 -10.26379 -10.16346 -9.85734 -9.50460 -9.18333 -8.74858 -8.41812 -7.59782 -6.07035 -4.14928 3.20069 3.28293 3.33532 3.36208 3.56044 3.74340 4.08246 4.16104 4.40298 4.52018 4.70148 4.84077 4.86245 5.05676 5.13452 5.22798 5.25517 5.27327 5.37042 5.41295 5.44374 5.54233 5.62947 5.74662 5.77943 5.92707 5.99666 6.03249 6.25236 6.35417 6.71798 6.76213 6.92674 6.97921 7.03462 7.42785 7.50784 7.70664 8.00725 8.18934 8.50023 8.83725 9.05080 9.51557 10.98256 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.031742 B = 0.004658 C = 0.004452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.908064 B = 6010.190547 C = 6287.527952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.260 3.740 3 H 0.063 0.937 4 C -0.525 4.525 5 H 0.058 0.942 6 C 0.065 3.935 7 N -0.889 5.889 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.591 5.591 13 C 0.081 3.919 14 C 0.509 3.491 15 O -0.530 6.530 16 C 0.064 3.936 17 H 0.087 0.913 18 O -0.351 6.351 19 C 0.058 3.942 20 C -0.156 4.156 21 H 0.092 0.908 22 C 0.073 3.927 23 O -0.375 6.375 24 C 0.062 3.938 25 C -0.157 4.157 26 C -0.105 4.105 27 H 0.106 0.894 28 H 0.030 0.970 29 H 0.094 0.906 30 H 0.010 0.990 31 H 0.264 0.736 32 H 0.051 0.949 33 H 0.072 0.928 34 H 0.052 0.948 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.095 0.905 38 H 0.054 0.946 39 H 0.097 0.903 40 H 0.052 0.948 41 H 0.084 0.916 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.420 -6.932 -17.453 18.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.160 3.840 3 H 0.081 0.919 4 C -0.564 4.564 5 H 0.076 0.924 6 C -0.137 4.137 7 N -0.527 5.527 8 Si 0.727 3.273 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.203 1.203 12 N -0.325 5.325 13 C -0.063 4.063 14 C 0.294 3.706 15 O -0.407 6.407 16 C 0.003 3.997 17 H 0.105 0.895 18 O -0.270 6.270 19 C -0.019 4.019 20 C -0.175 4.175 21 H 0.111 0.889 22 C -0.004 4.004 23 O -0.293 6.293 24 C -0.015 4.015 25 C -0.195 4.195 26 C -0.124 4.124 27 H 0.124 0.876 28 H 0.049 0.951 29 H 0.113 0.887 30 H 0.029 0.971 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.091 0.909 34 H 0.071 0.929 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.113 0.887 38 H 0.072 0.928 39 H 0.115 0.885 40 H 0.070 0.930 41 H 0.102 0.898 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.112 -5.901 -17.183 18.202 hybrid contribution 0.190 -1.122 1.075 1.565 sum -0.922 -7.023 -16.108 17.596 Atomic orbital electron populations 1.22097 0.98196 0.99334 1.00821 1.18928 0.90707 0.94498 0.79859 0.91929 1.21270 1.31821 1.12998 0.90298 0.92364 1.24884 0.94943 0.94972 0.98948 1.69859 1.36382 1.22557 1.23875 0.86550 0.79293 0.79514 0.81990 1.20245 1.21167 1.20266 1.48153 1.49338 1.11482 1.23494 1.21682 1.01895 0.83490 0.99234 1.20000 0.79496 0.86781 0.84331 1.90676 1.53838 1.18980 1.77184 1.23195 0.89475 0.94725 0.92307 0.89536 1.88703 1.53234 1.68631 1.16391 1.23097 0.96086 0.99792 0.82939 1.22741 0.96972 1.01370 0.96389 0.88931 1.21919 0.95727 0.86171 0.96612 1.88102 1.62751 1.31878 1.46587 1.22700 0.91641 1.02401 0.84716 1.22338 1.00974 0.97185 0.98982 1.22911 0.96529 0.99698 0.93243 0.87566 0.95084 0.88747 0.97063 0.92629 0.93071 0.90899 0.92908 0.90425 0.91227 0.88692 0.92781 0.88473 0.93012 0.89785 0.89438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.39 8.94 37.16 0.33 -3.06 16 2 C 0.26 6.59 2.63 -69.08 -0.18 6.40 16 3 H 0.06 1.86 6.91 -51.93 -0.36 1.51 16 4 C -0.53 -14.22 8.37 -34.44 -0.29 -14.51 16 5 H 0.06 1.56 7.54 -52.49 -0.40 1.16 16 6 C 0.06 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.89 -25.12 11.32 55.43 0.63 -24.49 16 8 Si 0.90 21.13 29.54 -169.99 -5.02 16.10 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 12 N -0.59 -12.41 2.75 -175.27 -0.48 -12.89 16 13 C 0.08 1.30 9.42 59.84 0.56 1.87 16 14 C 0.51 10.79 5.34 -10.98 -0.06 10.74 16 15 O -0.53 -13.81 15.71 -13.57 -0.21 -14.03 16 16 C 0.06 1.04 2.53 -26.35 -0.07 0.97 16 17 H 0.09 1.24 7.56 -51.93 -0.39 0.84 16 18 O -0.35 -6.15 10.24 -54.36 -0.56 -6.70 16 19 C 0.06 0.72 6.83 37.51 0.26 0.98 16 20 C -0.16 -1.58 2.98 -90.32 -0.27 -1.85 16 21 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 22 C 0.07 0.66 6.12 36.27 0.22 0.88 16 23 O -0.37 -4.45 10.48 -35.23 -0.37 -4.82 16 24 C 0.06 0.71 6.81 37.40 0.25 0.96 16 25 C -0.16 -2.23 4.22 -26.44 -0.11 -2.34 16 26 C -0.11 -1.31 3.04 -88.21 -0.27 -1.58 16 27 H 0.11 1.11 6.52 -51.93 -0.34 0.77 16 28 H 0.03 0.66 6.68 -51.93 -0.35 0.31 16 29 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16 30 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 32 H 0.05 0.82 8.02 -51.93 -0.42 0.40 16 33 H 0.07 1.16 6.44 -51.93 -0.33 0.82 16 34 H 0.05 0.65 4.46 -51.93 -0.23 0.42 16 35 H 0.08 1.02 7.62 -51.93 -0.40 0.63 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.05 0.41 8.13 -51.93 -0.42 -0.01 16 39 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.05 0.50 8.12 -51.93 -0.42 0.08 16 41 H 0.08 1.31 7.77 -51.93 -0.40 0.91 16 42 H 0.09 1.53 6.83 -51.93 -0.35 1.17 16 LS Contribution 321.59 15.07 4.85 4.85 Total: -1.00 -32.73 321.59 -7.26 -39.99 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -6.38 Total: 0.85 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: 0.29 Total: 1.15 kcal Atomic # 7 Polarization: -37.53 SS G_CDS: 0.15 Total: -37.38 kcal Atomic # 8 Polarization: -24.41 SS G_CDS: -1.14 Total: -25.55 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.73 -7.26 -39.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335776895.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.645 kcal (2) G-P(sol) polarization free energy of solvation -32.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds