Wall clock time and date at job start Tue Mar 31 2020 06:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21272 * 120.00272 * 2 1 4 4 N 1.34782 * 119.99603 * 179.97438 * 2 1 3 5 5 C 1.46494 * 119.99862 * 180.02562 * 4 2 1 6 6 C 1.52998 * 109.47111 * 205.00214 * 5 4 2 7 7 C 1.53005 * 109.46947 * 299.99470 * 6 5 4 8 8 C 1.52992 * 109.47274 * 300.00064 * 7 6 5 9 9 C 1.50700 * 109.47257 * 179.97438 * 8 7 6 10 10 O 1.20822 * 119.99958 * 359.97438 * 9 8 7 11 11 O 1.34234 * 120.00068 * 180.02562 * 9 8 7 12 12 C 1.45196 * 116.99938 * 179.97438 * 11 9 8 13 13 H 1.09004 * 109.47117 * 30.00246 * 12 11 9 14 14 C 1.52994 * 109.47482 * 269.99807 * 12 11 9 15 15 C 1.50707 * 109.46838 * 149.99799 * 12 11 9 16 16 H 1.07998 * 120.00336 * 0.02562 * 15 12 11 17 17 C 1.37884 * 119.99623 * 180.02562 * 15 12 11 18 18 N 1.31518 * 120.00031 * 359.97438 * 17 15 12 19 19 Si 1.86797 * 119.99709 * 180.02562 * 17 15 12 20 20 H 1.48506 * 109.47091 * 89.99834 * 19 17 15 21 21 H 1.48494 * 109.47234 * 209.99692 * 19 17 15 22 22 H 1.48502 * 109.47281 * 329.99994 * 19 17 15 23 23 C 1.53003 * 109.47195 * 59.99743 * 8 7 6 24 24 C 1.52994 * 109.47618 * 84.99618 * 5 4 2 25 25 H 1.08995 * 109.47372 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47154 * 300.00580 * 1 2 3 27 27 H 1.09002 * 109.46398 * 59.99887 * 1 2 3 28 28 H 0.97003 * 119.99991 * 0.02562 * 4 2 1 29 29 H 1.09005 * 109.47254 * 324.99708 * 5 4 2 30 30 H 1.09000 * 109.47603 * 179.97438 * 6 5 4 31 31 H 1.08998 * 109.47444 * 59.99493 * 6 5 4 32 32 H 1.09004 * 109.47166 * 179.97438 * 7 6 5 33 33 H 1.09005 * 109.46988 * 60.00077 * 7 6 5 34 34 H 1.08997 * 109.47279 * 300.00213 * 8 7 6 35 35 H 1.09002 * 109.47001 * 60.00056 * 14 12 11 36 36 H 1.08994 * 109.47774 * 180.02562 * 14 12 11 37 37 H 1.09004 * 109.47303 * 300.00325 * 14 12 11 38 38 H 0.96998 * 119.99390 * 180.02562 * 18 17 15 39 39 H 1.09005 * 109.46932 * 60.00069 * 23 8 7 40 40 H 1.08998 * 109.47453 * 180.02562 * 23 8 7 41 41 H 1.09000 * 109.47301 * 179.97438 * 24 5 4 42 42 H 1.08999 * 109.47498 * 300.00561 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 3.6458 -1.1674 0.0011 6 6 4.1560 -2.4748 -0.6081 7 6 3.6457 -3.6563 0.2195 8 6 4.1552 -3.5302 1.6565 9 6 3.6520 -4.6936 2.4718 10 8 2.9568 -5.5367 1.9563 11 8 3.9754 -4.7926 3.7708 12 6 3.4550 -5.9390 4.4941 13 1 3.3412 -6.7795 3.8094 14 6 2.0947 -5.5859 5.0989 15 6 4.4123 -6.3146 5.5958 16 1 5.3207 -5.7481 5.7383 17 6 4.1284 -7.3816 6.4217 18 7 3.0220 -8.0711 6.2484 19 14 5.3146 -7.8467 7.7876 20 1 4.9554 -7.1116 9.0269 21 1 5.2330 -9.3082 8.0378 22 1 6.6986 -7.4902 7.3842 23 6 3.6450 -2.2227 2.2657 24 6 4.1554 -1.0412 1.4382 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5139 -0.8900 28 1 1.6958 -2.0073 0.0005 29 1 4.0094 -0.3257 -0.5885 30 1 5.2460 -2.4748 -0.6081 31 1 3.7930 -2.5647 -1.6319 32 1 4.0087 -4.5878 -0.2148 33 1 2.5556 -3.6562 0.2191 34 1 5.2451 -3.5302 1.6569 35 1 1.4023 -5.3142 4.3021 36 1 1.7043 -6.4463 5.6423 37 1 2.2086 -4.7454 5.7836 38 1 2.8221 -8.8214 6.8298 39 1 2.5550 -2.2227 2.2653 40 1 4.0084 -2.1327 3.2894 41 1 5.2453 -1.0418 1.4386 42 1 3.7919 -0.1098 1.8722 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342588417.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:22 Heat of formation + Delta-G solvation = -153.496501 kcal Electronic energy + Delta-G solvation = -23022.222688 eV Core-core repulsion = 19580.180708 eV Total energy + Delta-G solvation = -3442.041979 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.54180 -39.51856 -37.83108 -35.71384 -33.84086 -33.24996 -31.13867 -30.91755 -29.60816 -28.79041 -25.34963 -24.07526 -22.77587 -21.60627 -21.13010 -19.71677 -19.06288 -17.22151 -17.05116 -16.62610 -16.07934 -15.78192 -15.46430 -15.00895 -14.70502 -14.27081 -14.12804 -13.79049 -13.38651 -12.96495 -12.84126 -12.70086 -12.38891 -12.31306 -12.27770 -11.99271 -11.76486 -11.29894 -11.24965 -11.09150 -10.91186 -10.84619 -10.55218 -10.41104 -10.35921 -10.28932 -10.01235 -9.56925 -9.47778 -9.17381 -8.92682 -8.51187 -6.20556 -4.27448 2.50299 2.97592 3.09576 3.23129 3.28558 3.32185 3.63690 4.31095 4.51796 4.57302 4.70315 4.83922 4.96705 5.01781 5.04382 5.12629 5.19212 5.28592 5.34171 5.40075 5.48131 5.61723 5.63259 5.82020 5.92296 5.93951 5.99883 6.12791 6.26588 6.29046 6.39707 6.61544 6.85443 6.89217 7.15894 7.36272 7.58141 7.70591 7.92105 8.08129 8.12419 8.62534 8.87342 9.38253 10.86877 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.029484 B = 0.003548 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.451338 B = 7889.998555 C = 8051.478389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.511 3.489 3 O -0.552 6.552 4 N -0.722 5.722 5 C 0.142 3.858 6 C -0.126 4.126 7 C -0.104 4.104 8 C -0.083 4.083 9 C 0.455 3.545 10 O -0.524 6.524 11 O -0.355 6.355 12 C 0.215 3.785 13 H 0.046 0.954 14 C -0.153 4.153 15 C -0.521 4.521 16 H 0.068 0.932 17 C 0.062 3.938 18 N -0.889 5.889 19 Si 0.912 3.088 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.271 1.271 23 C -0.108 4.108 24 C -0.128 4.128 25 H 0.076 0.924 26 H 0.094 0.906 27 H 0.092 0.908 28 H 0.402 0.598 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.104 0.896 35 H 0.014 0.986 36 H 0.099 0.901 37 H 0.036 0.964 38 H 0.266 0.734 39 H 0.065 0.935 40 H 0.081 0.919 41 H 0.076 0.924 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.646 12.370 -12.769 17.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.298 3.702 3 O -0.430 6.430 4 N -0.376 5.376 5 C 0.037 3.963 6 C -0.163 4.163 7 C -0.141 4.141 8 C -0.102 4.102 9 C 0.297 3.703 10 O -0.414 6.414 11 O -0.271 6.271 12 C 0.162 3.838 13 H 0.063 0.937 14 C -0.211 4.211 15 C -0.559 4.559 16 H 0.087 0.913 17 C -0.140 4.140 18 N -0.527 5.527 19 Si 0.738 3.262 20 H -0.203 1.203 21 H -0.210 1.210 22 H -0.196 1.196 23 C -0.145 4.145 24 C -0.166 4.166 25 H 0.095 0.905 26 H 0.113 0.887 27 H 0.111 0.889 28 H 0.238 0.762 29 H 0.107 0.893 30 H 0.100 0.900 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.086 0.914 34 H 0.122 0.878 35 H 0.034 0.966 36 H 0.117 0.883 37 H 0.055 0.945 38 H 0.076 0.924 39 H 0.083 0.917 40 H 0.099 0.901 41 H 0.094 0.906 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.521 12.677 -12.789 18.072 hybrid contribution 0.162 -0.956 0.825 1.273 sum -1.359 11.721 -11.965 16.804 Atomic orbital electron populations 1.21865 0.91933 1.04318 1.05187 1.20800 0.90574 0.83569 0.75249 1.90705 1.70780 1.31463 1.50099 1.46323 1.07438 1.08811 1.75001 1.20999 0.79771 0.98601 0.96911 1.21854 1.01905 0.93342 0.99243 1.21403 1.01286 0.98560 0.92893 1.21043 1.02548 0.92553 0.94044 1.23352 0.77901 0.86149 0.82864 1.90584 1.36478 1.41817 1.72531 1.86483 1.69044 1.50338 1.21216 1.20616 0.92126 0.81022 0.90015 0.93668 1.22147 0.97015 1.02635 0.99318 1.21037 1.06457 1.14427 1.13992 0.91335 1.24892 0.95851 0.95529 0.97719 1.69901 1.24024 1.19878 1.38932 0.86275 0.80899 0.77590 0.81386 1.20342 1.20967 1.19615 1.21456 1.01168 0.91826 1.00095 1.21929 1.01207 0.98671 0.94835 0.90529 0.88730 0.88891 0.76227 0.89346 0.89981 0.90877 0.90470 0.91373 0.87810 0.96644 0.88295 0.94485 0.92407 0.91665 0.90070 0.90570 0.91002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.23 10.39 36.01 0.37 -0.86 16 2 C 0.51 5.47 7.90 -10.98 -0.09 5.39 16 3 O -0.55 -8.15 16.76 5.56 0.09 -8.06 16 4 N -0.72 -6.79 4.23 -53.81 -0.23 -7.02 16 5 C 0.14 1.37 2.78 -67.94 -0.19 1.18 16 6 C -0.13 -1.07 5.61 -26.73 -0.15 -1.21 16 7 C -0.10 -1.17 4.32 -26.73 -0.12 -1.28 16 8 C -0.08 -1.14 2.63 -91.77 -0.24 -1.38 16 9 C 0.45 9.05 7.23 36.01 0.26 9.31 16 10 O -0.52 -11.80 15.20 -18.75 -0.28 -12.09 16 11 O -0.35 -8.27 9.77 -39.27 -0.38 -8.65 16 12 C 0.21 5.72 2.56 -27.88 -0.07 5.65 16 13 H 0.05 1.33 7.16 -51.93 -0.37 0.96 16 14 C -0.15 -3.86 9.33 37.15 0.35 -3.52 16 15 C -0.52 -14.58 8.90 -34.43 -0.31 -14.89 16 16 H 0.07 1.89 7.81 -52.49 -0.41 1.48 16 17 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 18 N -0.89 -25.17 11.32 55.43 0.63 -24.54 16 19 Si 0.91 20.99 29.54 -169.99 -5.02 15.96 16 20 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 23 C -0.11 -1.36 4.98 -26.73 -0.13 -1.49 16 24 C -0.13 -1.35 5.60 -26.73 -0.15 -1.50 16 25 H 0.08 0.41 7.91 -51.93 -0.41 0.00 16 26 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.40 3.26 6.70 -40.82 -0.27 2.99 16 29 H 0.09 0.92 7.58 -51.93 -0.39 0.53 16 30 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.93 8.10 -51.93 -0.42 0.51 16 33 H 0.07 0.77 6.46 -51.93 -0.34 0.44 16 34 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 36 H 0.10 2.67 6.07 -51.93 -0.32 2.35 16 37 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 39 H 0.06 0.84 7.60 -51.93 -0.39 0.45 16 40 H 0.08 1.12 8.11 -51.93 -0.42 0.70 16 41 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 340.77 15.07 5.14 5.14 Total: -1.00 -32.82 340.77 -7.30 -40.13 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -6.69 Total: 2.11 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: -0.56 Total: -2.98 kcal Atomic # 7 Polarization: -31.96 SS G_CDS: 0.40 Total: -31.56 kcal Atomic # 8 Polarization: -28.22 SS G_CDS: -0.58 Total: -28.79 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.82 -7.30 -40.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342588417.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.371 kcal (2) G-P(sol) polarization free energy of solvation -32.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds