Wall clock time and date at job start Tue Mar 31 2020 06:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46509 * 109.46826 * 2 1 4 4 C 1.46755 * 124.35265 * 89.99758 * 3 2 1 5 5 C 1.54476 * 105.47483 * 162.98124 * 4 3 2 6 6 C 1.54627 * 101.76424 * 25.41616 * 5 4 3 7 7 H 1.09001 * 110.48777 * 93.88219 * 6 5 4 8 8 O 1.45199 * 110.48992 * 216.52509 * 6 5 4 9 9 C 1.34225 * 117.00463 * 210.00120 * 8 6 5 10 10 O 1.20829 * 120.00047 * 359.97438 * 9 8 6 11 11 C 1.50702 * 120.00446 * 179.97438 * 9 8 6 12 12 C 1.52996 * 109.47493 * 179.97438 * 11 9 8 13 13 C 1.52996 * 109.47478 * 180.02562 * 12 11 9 14 14 C 1.52998 * 109.47128 * 180.02562 * 13 12 11 15 15 C 1.50710 * 109.46936 * 179.97438 * 14 13 12 16 16 H 1.07996 * 120.00090 * 359.97438 * 15 14 13 17 17 C 1.37876 * 119.99753 * 179.97438 * 15 14 13 18 18 N 1.31513 * 119.99697 * 180.02562 * 17 15 14 19 19 Si 1.86802 * 120.00309 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47179 * 89.99868 * 19 17 15 21 21 H 1.48501 * 109.46946 * 210.00074 * 19 17 15 22 22 H 1.48504 * 109.46678 * 329.99812 * 19 17 15 23 23 C 1.34424 * 124.34231 * 269.99263 * 3 2 1 24 24 O 1.21280 * 124.94844 * 0.44774 * 23 3 2 25 25 H 1.09003 * 109.47341 * 180.02562 * 1 2 3 26 26 H 1.08992 * 109.47762 * 300.00379 * 1 2 3 27 27 H 1.09006 * 109.47127 * 60.00823 * 1 2 3 28 28 H 1.08998 * 109.47488 * 239.99924 * 2 1 3 29 29 H 1.09006 * 109.47127 * 119.99177 * 2 1 3 30 30 H 1.08999 * 110.24678 * 43.98589 * 4 3 2 31 31 H 1.08996 * 110.32158 * 282.02104 * 4 3 2 32 32 H 1.09005 * 110.97268 * 267.29735 * 5 4 3 33 33 H 1.08997 * 110.97040 * 143.53479 * 5 4 3 34 34 H 1.08997 * 109.47183 * 300.00641 * 11 9 8 35 35 H 1.09009 * 109.46794 * 60.00017 * 11 9 8 36 36 H 1.09004 * 109.47203 * 300.00507 * 12 11 9 37 37 H 1.09001 * 109.47348 * 59.99797 * 12 11 9 38 38 H 1.09001 * 109.46556 * 299.99876 * 13 12 11 39 39 H 1.08995 * 109.47244 * 60.00058 * 13 12 11 40 40 H 1.08994 * 109.47584 * 299.99439 * 14 13 12 41 41 H 1.09002 * 109.47205 * 60.00262 * 14 13 12 42 42 H 0.97000 * 120.00069 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2942 2.1621 1.2116 5 6 3.1742 3.3442 0.7486 6 6 2.7693 3.4754 -0.7380 7 1 1.9743 4.2122 -0.8532 8 8 3.9192 3.8358 -1.5480 9 6 3.6837 4.5641 -2.6507 10 8 2.5541 4.8893 -2.9300 11 6 4.8282 4.9762 -3.5403 12 6 4.2908 5.7911 -4.7183 13 6 5.4526 6.2089 -5.6218 14 6 4.9151 7.0244 -6.7995 15 6 6.0597 7.4364 -7.6892 16 1 7.0695 7.1461 -7.4393 17 6 5.8177 8.1841 -8.8220 18 7 6.8164 8.5432 -9.5986 19 14 4.0712 8.6869 -9.2539 20 1 3.7633 9.9964 -8.6251 21 1 3.9398 8.8027 -10.7286 22 1 3.1222 7.6610 -8.7514 23 6 2.2711 2.0963 -1.1099 24 8 2.1210 1.6945 -2.2443 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8898 27 1 -0.3634 0.5137 -0.8901 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 2.8322 1.5534 1.9382 31 1 1.3642 2.5310 1.6442 32 1 4.2330 3.1035 0.8447 33 1 2.9305 4.2518 1.3008 34 1 5.5319 5.5822 -2.9697 35 1 5.3353 4.0870 -3.9153 36 1 3.5872 5.1846 -5.2888 37 1 3.7834 6.6801 -4.3438 38 1 6.1563 6.8153 -5.0516 39 1 5.9595 5.3197 -5.9964 40 1 4.2112 6.4185 -7.3699 41 1 4.4085 7.9137 -6.4246 42 1 6.6463 9.0695 -10.3955 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346771677.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:29 Heat of formation + Delta-G solvation = -136.601639 kcal Electronic energy + Delta-G solvation = -21851.006420 eV Core-core repulsion = 18409.697057 eV Total energy + Delta-G solvation = -3441.309363 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.31120 -39.92537 -36.92591 -36.67201 -35.07818 -33.87715 -32.60238 -30.41960 -29.70760 -27.88342 -26.09383 -24.10943 -22.90893 -22.07834 -20.67964 -20.05027 -19.81609 -17.93621 -17.50114 -16.87064 -16.58024 -16.35292 -16.13472 -15.09898 -14.87342 -14.36591 -14.18418 -14.07537 -13.94926 -13.53173 -13.38161 -12.77319 -12.68612 -12.59763 -12.51316 -12.36484 -12.14033 -11.76207 -11.70199 -11.60214 -11.43672 -11.13200 -10.76953 -10.55857 -10.48570 -9.89161 -9.84406 -9.64857 -9.51288 -9.22902 -9.11215 -8.47782 -5.98852 -3.96364 1.88752 2.22302 2.43775 2.80142 3.36670 3.43803 3.50045 3.78619 3.87790 4.26540 4.39311 4.51653 4.55192 4.66779 4.73515 4.88323 4.94363 4.97272 5.17961 5.21087 5.23052 5.24279 5.35912 5.37621 5.40727 5.68896 5.71695 5.98985 6.06863 6.08068 6.29278 6.37522 6.58480 6.65164 6.79181 6.98603 7.38456 7.51336 7.70022 7.76893 7.86141 8.59798 9.06197 9.64379 11.14613 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.036322 B = 0.002577 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.701291 B =10862.141049 C =11179.109571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.123 3.877 3 N -0.619 5.619 4 C 0.104 3.896 5 C -0.127 4.127 6 C 0.053 3.947 7 H 0.122 0.878 8 O -0.338 6.338 9 C 0.462 3.538 10 O -0.497 6.497 11 C -0.109 4.109 12 C -0.112 4.112 13 C -0.102 4.102 14 C -0.016 4.016 15 C -0.519 4.519 16 H 0.071 0.929 17 C 0.064 3.936 18 N -0.906 5.906 19 Si 0.880 3.120 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.264 1.264 23 C 0.507 3.493 24 O -0.506 6.506 25 H 0.069 0.931 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.055 0.945 39 H 0.056 0.944 40 H 0.016 0.984 41 H 0.012 0.988 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.842 -15.639 28.389 33.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.001 3.999 3 N -0.356 5.356 4 C -0.019 4.019 5 C -0.164 4.164 6 C -0.006 4.006 7 H 0.140 0.860 8 O -0.254 6.254 9 C 0.305 3.695 10 O -0.383 6.383 11 C -0.146 4.146 12 C -0.149 4.149 13 C -0.139 4.139 14 C -0.053 4.053 15 C -0.557 4.557 16 H 0.090 0.910 17 C -0.136 4.136 18 N -0.545 5.545 19 Si 0.707 3.293 20 H -0.203 1.203 21 H -0.215 1.215 22 H -0.189 1.189 23 C 0.292 3.708 24 O -0.379 6.379 25 H 0.088 0.912 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.102 0.898 29 H 0.100 0.900 30 H 0.105 0.895 31 H 0.095 0.905 32 H 0.119 0.881 33 H 0.121 0.879 34 H 0.124 0.876 35 H 0.124 0.876 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.035 0.965 41 H 0.030 0.970 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.268 -15.747 27.529 33.335 hybrid contribution -1.069 0.320 -0.232 1.140 sum -11.337 -15.426 27.297 33.341 Atomic orbital electron populations 1.22177 0.95593 1.02589 1.02611 1.21397 0.94523 0.80519 1.03431 1.48211 1.66435 1.13914 1.07044 1.22120 0.99607 0.92458 0.87694 1.22784 1.02347 0.99461 0.91843 1.23289 0.90468 0.95725 0.91113 0.85998 1.86661 1.36252 1.66108 1.36418 1.24298 0.91746 0.74068 0.79428 1.90666 1.24689 1.52269 1.70628 1.21588 0.94557 1.02890 0.95592 1.21618 0.99649 0.99302 0.94364 1.21470 0.95835 1.00030 0.96604 1.19582 0.97140 0.94933 0.93649 1.21175 0.94381 1.33102 1.07050 0.91039 1.25043 0.96914 0.95570 0.96107 1.69921 1.31058 1.38496 1.15015 0.86774 0.85789 0.79417 0.77321 1.20333 1.21455 1.18891 1.20953 0.77505 0.87484 0.84841 1.90777 1.51711 1.74551 1.20903 0.91184 0.92359 0.92083 0.89805 0.90025 0.89465 0.90491 0.88091 0.87929 0.87603 0.87596 0.91424 0.91509 0.92580 0.92531 0.96535 0.97009 0.92820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.05 10.24 37.15 0.38 -0.67 16 2 C 0.12 0.81 6.65 -4.04 -0.03 0.79 16 3 N -0.62 -5.11 2.93 -172.42 -0.51 -5.62 16 4 C 0.10 0.46 7.35 -3.13 -0.02 0.43 16 5 C -0.13 -0.67 6.92 -25.10 -0.17 -0.85 16 6 C 0.05 0.56 3.28 -26.74 -0.09 0.47 16 7 H 0.12 1.33 7.14 -51.93 -0.37 0.96 16 8 O -0.34 -4.32 9.95 -42.14 -0.42 -4.73 16 9 C 0.46 6.89 7.96 36.01 0.29 7.18 16 10 O -0.50 -8.90 15.19 -18.75 -0.28 -9.19 16 11 C -0.11 -1.48 5.81 -27.88 -0.16 -1.64 16 12 C -0.11 -1.90 4.50 -26.74 -0.12 -2.02 16 13 C -0.10 -2.02 5.15 -26.73 -0.14 -2.15 16 14 C -0.02 -0.39 4.04 -27.88 -0.11 -0.50 16 15 C -0.52 -15.19 9.66 -34.44 -0.33 -15.52 16 16 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 17 C 0.06 1.93 5.47 -17.82 -0.10 1.84 16 18 N -0.91 -28.56 13.96 55.43 0.77 -27.79 16 19 Si 0.88 22.54 27.47 -169.99 -4.67 17.87 16 20 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 22 H -0.26 -6.59 6.54 56.52 0.37 -6.22 16 23 C 0.51 6.35 7.71 -10.86 -0.08 6.27 16 24 O -0.51 -8.75 17.60 1.49 0.03 -8.73 16 25 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 26 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.08 0.69 7.93 -51.93 -0.41 0.27 16 29 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.09 0.20 8.14 -51.93 -0.42 -0.23 16 31 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 32 H 0.10 0.50 8.11 -51.93 -0.42 0.08 16 33 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.11 1.19 8.14 -51.93 -0.42 0.76 16 35 H 0.11 1.32 8.14 -51.92 -0.42 0.89 16 36 H 0.07 1.23 8.10 -51.93 -0.42 0.81 16 37 H 0.07 1.15 8.10 -51.93 -0.42 0.73 16 38 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.02 0.41 7.20 -51.93 -0.37 0.04 16 41 H 0.01 0.29 7.57 -51.93 -0.39 -0.11 16 42 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 LS Contribution 352.62 15.07 5.31 5.31 Total: -1.00 -37.23 352.62 -7.51 -44.73 By element: Atomic # 1 Polarization: 1.58 SS G_CDS: -7.05 Total: -5.47 kcal Atomic # 6 Polarization: -5.70 SS G_CDS: -0.69 Total: -6.39 kcal Atomic # 7 Polarization: -33.67 SS G_CDS: 0.27 Total: -33.41 kcal Atomic # 8 Polarization: -21.97 SS G_CDS: -0.68 Total: -22.65 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -4.67 Total: 17.87 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -37.23 -7.51 -44.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346771677.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.871 kcal (2) G-P(sol) polarization free energy of solvation -37.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds