Wall clock time and date at job start Tue Mar 31 2020 06:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46498 * 109.47216 * 2 1 4 4 C 1.46766 * 124.34663 * 90.00539 * 3 2 1 5 5 C 1.54480 * 105.47504 * 162.95968 * 4 3 2 6 6 C 1.54631 * 101.76379 * 25.41563 * 5 4 3 7 7 H 1.08996 * 110.60047 * 216.46729 * 6 5 4 8 8 O 1.45199 * 110.48745 * 93.87739 * 6 5 4 9 9 C 1.34231 * 117.00137 * 153.77112 * 8 6 5 10 10 O 1.20830 * 119.99740 * 0.02562 * 9 8 6 11 11 C 1.50695 * 120.00236 * 180.02562 * 9 8 6 12 12 C 1.53001 * 109.47393 * 180.02562 * 11 9 8 13 13 C 1.53000 * 109.47163 * 180.02562 * 12 11 9 14 14 C 1.52998 * 109.46810 * 179.97438 * 13 12 11 15 15 C 1.50705 * 109.47028 * 179.97438 * 14 13 12 16 16 H 1.07990 * 119.99948 * 0.02562 * 15 14 13 17 17 C 1.37883 * 119.99712 * 179.97438 * 15 14 13 18 18 N 1.31512 * 120.00258 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99591 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47039 * 90.00153 * 19 17 15 21 21 H 1.48497 * 109.46919 * 210.00163 * 19 17 15 22 22 H 1.48502 * 109.47147 * 330.00332 * 19 17 15 23 23 C 1.34417 * 124.35534 * 269.97878 * 3 2 1 24 24 O 1.21283 * 124.93738 * 0.41133 * 23 3 2 25 25 H 1.08999 * 109.47512 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46694 * 299.99664 * 1 2 3 27 27 H 1.08995 * 109.47387 * 59.99520 * 1 2 3 28 28 H 1.09007 * 109.46694 * 240.00336 * 2 1 3 29 29 H 1.09001 * 109.46978 * 120.00633 * 2 1 3 30 30 H 1.09000 * 110.24445 * 281.96191 * 4 3 2 31 31 H 1.08996 * 110.24758 * 43.95922 * 4 3 2 32 32 H 1.08998 * 110.96675 * 143.53087 * 5 4 3 33 33 H 1.08998 * 110.96857 * 267.29572 * 5 4 3 34 34 H 1.08997 * 109.47434 * 300.00356 * 11 9 8 35 35 H 1.09006 * 109.46988 * 60.00132 * 11 9 8 36 36 H 1.09000 * 109.46648 * 300.00115 * 12 11 9 37 37 H 1.08996 * 109.46926 * 59.99973 * 12 11 9 38 38 H 1.09000 * 109.47252 * 299.99524 * 13 12 11 39 39 H 1.08996 * 109.47402 * 60.00044 * 13 12 11 40 40 H 1.08993 * 109.47497 * 299.99778 * 14 13 12 41 41 H 1.09006 * 109.47177 * 59.99959 * 14 13 12 42 42 H 0.96999 * 119.99963 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2945 2.1618 1.2118 5 6 3.1751 3.3437 0.7489 6 6 2.7704 3.4751 -0.7377 7 1 3.6322 3.7464 -1.3472 8 8 1.7117 4.4569 -0.8913 9 6 1.6216 5.0752 -2.0793 10 8 2.4013 4.8046 -2.9618 11 6 0.5481 6.1068 -2.3124 12 6 0.6658 6.6526 -3.7369 13 6 -0.4237 7.7004 -3.9733 14 6 -0.3055 8.2465 -5.3976 15 6 -1.3791 9.2782 -5.6307 16 1 -2.0757 9.5203 -4.8418 17 6 -1.4712 9.9136 -6.8509 18 7 -0.6226 9.6191 -7.8114 19 14 -2.8015 11.1929 -7.1396 20 1 -2.2894 12.5340 -6.7595 21 1 -3.1814 11.1966 -8.5751 22 1 -3.9912 10.8649 -6.3135 23 6 2.2716 2.0962 -1.1097 24 8 2.1223 1.6941 -2.2442 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 1.3639 2.5310 1.6428 31 1 2.8321 1.5528 1.9384 32 1 2.9315 4.2513 1.3012 33 1 4.2337 3.1025 0.8452 34 1 -0.4317 5.6481 -2.1793 35 1 0.6671 6.9226 -1.5993 36 1 1.6456 7.1112 -3.8703 37 1 0.5465 5.8366 -4.4496 38 1 -1.4037 7.2421 -3.8397 39 1 -0.3040 8.5163 -3.2606 40 1 0.6744 8.7049 -5.5308 41 1 -0.4250 7.4308 -6.1106 42 1 -0.6872 10.0664 -8.6697 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346771692.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:32 Heat of formation + Delta-G solvation = -138.854343 kcal Electronic energy + Delta-G solvation = -21932.469167 eV Core-core repulsion = 18491.062119 eV Total energy + Delta-G solvation = -3441.407048 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.29125 -39.83521 -36.96483 -36.49648 -34.95710 -33.79313 -32.65232 -30.12487 -29.58381 -27.76590 -25.82717 -24.03238 -23.09117 -22.06043 -20.81425 -20.00940 -19.74899 -17.92930 -17.33760 -16.66504 -16.32764 -16.17615 -15.87767 -15.42030 -14.78622 -14.42870 -14.15904 -14.04037 -13.82732 -13.57234 -13.16802 -12.90945 -12.65857 -12.47043 -12.28781 -12.10916 -11.81298 -11.69007 -11.63034 -11.47830 -11.40416 -10.99189 -10.58140 -10.54384 -10.44339 -10.35751 -9.87784 -9.62606 -9.26999 -9.14539 -9.00009 -8.29654 -5.94317 -3.96948 1.83926 2.26705 2.54544 2.88571 3.35125 3.41155 3.44462 3.85282 3.91408 4.31184 4.47321 4.50708 4.61583 4.77057 4.80352 4.95967 5.01019 5.09494 5.24208 5.27260 5.29250 5.29665 5.41110 5.43528 5.47397 5.73392 5.81234 6.07879 6.13157 6.20408 6.33810 6.49311 6.65892 6.79204 6.97434 7.18490 7.74539 7.77905 7.79056 7.89736 8.06724 8.48171 9.10696 9.66727 11.17064 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.033340 B = 0.002536 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.638033 B =11038.481204 C =11210.892896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.122 3.878 3 N -0.616 5.616 4 C 0.103 3.897 5 C -0.129 4.129 6 C 0.054 3.946 7 H 0.118 0.882 8 O -0.341 6.341 9 C 0.455 3.545 10 O -0.487 6.487 11 C -0.108 4.108 12 C -0.109 4.109 13 C -0.109 4.109 14 C 0.019 3.981 15 C -0.520 4.520 16 H 0.055 0.945 17 C 0.055 3.945 18 N -0.895 5.895 19 Si 0.892 3.108 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 C 0.504 3.496 24 O -0.503 6.503 25 H 0.069 0.931 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.108 0.892 33 H 0.101 0.899 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.049 0.951 39 H 0.049 0.951 40 H 0.016 0.984 41 H 0.017 0.983 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.916 -17.643 24.184 30.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.001 3.999 3 N -0.353 5.353 4 C -0.020 4.020 5 C -0.166 4.166 6 C -0.005 4.005 7 H 0.136 0.864 8 O -0.258 6.258 9 C 0.297 3.703 10 O -0.371 6.371 11 C -0.145 4.145 12 C -0.147 4.147 13 C -0.147 4.147 14 C -0.018 4.018 15 C -0.559 4.559 16 H 0.073 0.927 17 C -0.146 4.146 18 N -0.535 5.535 19 Si 0.720 3.280 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.199 1.199 23 C 0.289 3.711 24 O -0.377 6.377 25 H 0.088 0.912 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.101 0.899 29 H 0.099 0.901 30 H 0.096 0.904 31 H 0.102 0.898 32 H 0.126 0.874 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.123 0.877 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.035 0.965 41 H 0.035 0.965 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.111 -18.001 23.106 30.141 hybrid contribution -0.625 0.600 -0.231 0.897 sum 6.485 -17.400 22.875 29.464 Atomic orbital electron populations 1.22167 0.95477 1.02495 1.02781 1.21389 0.94682 0.80625 1.03234 1.48311 1.65745 1.14058 1.07179 1.22141 0.99976 0.92500 0.87392 1.22773 1.00789 1.00012 0.93049 1.23294 0.91874 0.86145 0.99154 0.86390 1.86657 1.51314 1.50109 1.37732 1.24388 0.85636 0.80843 0.79436 1.90712 1.41408 1.61817 1.43196 1.21614 0.95802 0.95404 1.01697 1.21599 1.01334 0.99790 0.91990 1.21644 0.95986 0.96002 1.01049 1.19100 0.97116 0.95752 0.89785 1.21273 1.14769 1.21726 0.98117 0.92695 1.25046 0.96128 0.97164 0.96249 1.69974 1.36709 1.42665 1.04115 0.86602 0.82204 0.81915 0.77313 1.20701 1.21257 1.19906 1.21024 0.77745 0.87542 0.84770 1.90791 1.51273 1.74674 1.20934 0.91249 0.92272 0.92043 0.89906 0.90147 0.90386 0.89793 0.87397 0.88022 0.87896 0.87734 0.91447 0.91428 0.93208 0.93188 0.96524 0.96506 0.93024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.22 10.24 37.16 0.38 -0.84 16 2 C 0.12 0.88 6.65 -4.04 -0.03 0.85 16 3 N -0.62 -5.50 2.93 -172.41 -0.51 -6.00 16 4 C 0.10 0.54 7.35 -3.12 -0.02 0.52 16 5 C -0.13 -0.72 6.92 -25.10 -0.17 -0.89 16 6 C 0.05 0.60 3.22 -26.74 -0.09 0.51 16 7 H 0.12 1.40 7.26 -51.93 -0.38 1.02 16 8 O -0.34 -4.30 9.95 -39.26 -0.39 -4.69 16 9 C 0.45 6.93 7.95 36.00 0.29 7.22 16 10 O -0.49 -9.15 15.25 -18.75 -0.29 -9.43 16 11 C -0.11 -1.50 5.81 -27.88 -0.16 -1.66 16 12 C -0.11 -1.97 4.50 -26.73 -0.12 -2.09 16 13 C -0.11 -2.25 5.15 -26.73 -0.14 -2.39 16 14 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 15 C -0.52 -15.07 9.11 -34.44 -0.31 -15.38 16 16 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.90 -27.72 13.29 55.43 0.74 -26.98 16 19 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 23 C 0.50 6.57 7.71 -10.86 -0.08 6.49 16 24 O -0.50 -8.98 17.59 5.55 0.10 -8.88 16 25 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.38 8.14 -51.92 -0.42 -0.05 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.08 0.70 7.93 -51.92 -0.41 0.29 16 29 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 32 H 0.11 0.47 8.11 -51.93 -0.42 0.05 16 33 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.07 1.26 8.10 -51.93 -0.42 0.84 16 37 H 0.07 1.31 8.10 -51.93 -0.42 0.89 16 38 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 39 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.26 7.57 8.31 -40.82 -0.34 7.24 16 LS Contribution 356.30 15.07 5.37 5.37 Total: -1.00 -36.81 356.30 -7.78 -44.59 By element: Atomic # 1 Polarization: 1.87 SS G_CDS: -7.09 Total: -5.22 kcal Atomic # 6 Polarization: -5.06 SS G_CDS: -0.70 Total: -5.76 kcal Atomic # 7 Polarization: -33.22 SS G_CDS: 0.23 Total: -32.99 kcal Atomic # 8 Polarization: -22.43 SS G_CDS: -0.58 Total: -23.00 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -36.81 -7.78 -44.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346771692.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.260 kcal (2) G-P(sol) polarization free energy of solvation -36.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds