Wall clock time and date at job start Tue Mar 31 2020 05:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47466 * 2 1 4 4 H 1.09006 * 109.46679 * 54.99625 * 3 2 1 5 5 C 1.50699 * 109.47385 * 174.99835 * 3 2 1 6 6 H 1.07998 * 119.99681 * 119.99682 * 5 3 2 7 7 C 1.37878 * 119.99943 * 300.00063 * 5 3 2 8 8 N 1.31509 * 119.99588 * 179.97438 * 7 5 3 9 9 Si 1.86792 * 119.99957 * 0.02562 * 7 5 3 10 10 H 1.48502 * 109.47581 * 90.00044 * 9 7 5 11 11 H 1.48502 * 109.46986 * 209.99689 * 9 7 5 12 12 H 1.48502 * 109.47277 * 329.99385 * 9 7 5 13 13 N 1.46502 * 109.46956 * 295.00377 * 3 2 1 14 14 C 1.34778 * 120.00202 * 85.00033 * 13 3 2 15 15 O 1.21279 * 120.00006 * 359.97438 * 14 13 3 16 16 C 1.50703 * 119.99773 * 179.97438 * 14 13 3 17 17 H 1.09000 * 110.01698 * 301.38575 * 16 14 13 18 18 C 1.53876 * 110.03162 * 62.83152 * 16 14 13 19 19 C 1.54264 * 106.59631 * 119.28407 * 18 16 14 20 20 C 1.54891 * 104.19941 * 23.60890 * 19 18 16 21 21 H 1.09001 * 110.91100 * 80.44135 * 20 19 18 22 22 C 1.50698 * 110.75604 * 203.74302 * 20 19 18 23 23 O 1.20822 * 119.99804 * 113.32834 * 22 20 19 24 24 O 1.34231 * 120.00053 * 293.32820 * 22 20 19 25 25 C 1.45198 * 116.99983 * 180.02562 * 24 22 20 26 26 C 1.54266 * 110.03127 * 179.97438 * 16 14 13 27 27 H 1.09003 * 109.46589 * 59.99646 * 1 2 3 28 28 H 1.09001 * 109.47141 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47162 * 300.00166 * 1 2 3 30 30 H 1.09008 * 109.47285 * 239.99965 * 2 1 3 31 31 H 1.08995 * 109.46936 * 120.00351 * 2 1 3 32 32 H 0.96999 * 119.99841 * 180.02562 * 8 7 5 33 33 H 0.97005 * 119.99947 * 264.99341 * 13 3 2 34 34 H 1.09007 * 110.03201 * 238.56691 * 18 16 14 35 35 H 1.08996 * 110.03389 * 359.95028 * 18 16 14 36 36 H 1.09000 * 110.48676 * 264.92436 * 19 18 16 37 37 H 1.09005 * 110.48541 * 142.28763 * 19 18 16 38 38 H 1.09002 * 109.47379 * 59.99613 * 25 24 22 39 39 H 1.09001 * 109.46782 * 299.99696 * 25 24 22 40 40 H 1.09004 * 109.47085 * 179.97438 * 25 24 22 41 41 H 1.08998 * 110.48624 * 98.42714 * 26 16 14 42 42 H 1.09004 * 110.59828 * 335.84323 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5420 1.4442 0.1239 6 1 4.1472 1.8887 -0.6523 7 6 4.1433 0.8783 1.2280 8 7 5.4540 0.8795 1.3358 9 14 3.0964 0.1088 2.5700 10 1 2.8755 -1.3273 2.2634 11 1 3.7937 0.2346 3.8751 12 1 1.7877 0.8073 2.6387 13 7 1.6525 2.0974 -1.2518 14 6 0.4352 2.6644 -1.3669 15 8 -0.3395 2.6320 -0.4343 16 6 0.0368 3.3387 -2.6544 17 1 0.7372 4.1405 -2.8880 18 6 0.0080 2.3119 -3.8002 19 6 -1.4384 2.2899 -4.3360 20 6 -2.0136 3.6707 -3.9338 21 1 -1.6936 4.4439 -4.6323 22 6 -3.5173 3.6189 -3.8497 23 8 -4.0677 3.7536 -2.7826 24 8 -4.2453 3.4231 -4.9603 25 6 -5.6884 3.3850 -4.8044 26 6 -1.3935 3.9042 -2.5342 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 5.8771 0.4810 2.1124 33 1 2.2720 2.1232 -1.9978 34 1 0.6945 2.6153 -4.5908 35 1 0.2831 1.3262 -3.4252 36 1 -2.0073 1.4879 -3.8656 37 1 -1.4419 2.1763 -5.4201 38 1 -6.0343 4.3323 -4.3907 39 1 -5.9596 2.5732 -4.1296 40 1 -6.1546 3.2214 -5.7761 41 1 -1.3645 4.9690 -2.3030 42 1 -1.9564 3.3647 -1.7725 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001447356711.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:14 Heat of formation + Delta-G solvation = -137.354347 kcal Electronic energy + Delta-G solvation = -23132.013739 eV Core-core repulsion = 19690.671735 eV Total energy + Delta-G solvation = -3441.342003 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.85171 -39.61707 -37.38258 -36.39865 -35.19595 -32.41940 -31.66114 -30.07901 -28.88106 -27.87238 -27.21388 -23.31527 -22.55795 -21.85893 -20.39303 -19.89746 -19.28816 -18.05431 -17.20615 -16.79136 -16.53036 -16.05760 -15.67159 -15.41726 -14.73581 -14.18816 -13.89162 -13.76557 -13.26501 -13.21404 -13.05257 -12.47552 -12.46149 -12.23252 -11.91348 -11.85448 -11.54925 -11.32927 -11.28388 -11.06651 -11.01748 -10.92152 -10.83918 -10.71648 -10.58099 -10.45504 -9.91566 -9.53308 -9.21612 -9.00226 -8.74495 -8.03324 -6.20816 -4.23034 2.05613 2.51215 3.23460 3.27424 3.36223 3.41862 3.94896 4.27367 4.32316 4.33993 4.69521 4.85569 4.91870 4.94570 5.12937 5.15640 5.20052 5.28223 5.29136 5.40780 5.47077 5.64063 5.75820 5.86853 5.98132 6.03131 6.03943 6.14060 6.20505 6.21135 6.42264 6.66909 6.71946 6.86813 6.98048 7.29123 7.33496 7.53994 7.59871 8.17474 8.55867 8.76970 8.99285 9.40700 10.91313 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.035266 B = 0.003795 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.765220 B = 7376.893316 C = 7673.448078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.138 4.138 3 C 0.242 3.758 4 H 0.048 0.952 5 C -0.534 4.534 6 H 0.080 0.920 7 C 0.078 3.922 8 N -0.893 5.893 9 Si 0.883 3.117 10 H -0.276 1.276 11 H -0.295 1.295 12 H -0.260 1.260 13 N -0.700 5.700 14 C 0.507 3.493 15 O -0.546 6.546 16 C -0.116 4.116 17 H 0.100 0.900 18 C -0.116 4.116 19 C -0.108 4.108 20 C -0.089 4.089 21 H 0.114 0.886 22 C 0.467 3.533 23 O -0.499 6.499 24 O -0.361 6.361 25 C 0.034 3.966 26 C -0.095 4.095 27 H 0.052 0.948 28 H 0.030 0.970 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.267 0.733 33 H 0.394 0.606 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.100 0.900 41 H 0.075 0.925 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.452 3.940 -15.271 22.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.176 4.176 3 C 0.138 3.862 4 H 0.066 0.934 5 C -0.572 4.572 6 H 0.098 0.902 7 C -0.125 4.125 8 N -0.530 5.530 9 Si 0.713 3.287 10 H -0.203 1.203 11 H -0.222 1.222 12 H -0.185 1.185 13 N -0.348 5.348 14 C 0.292 3.708 15 O -0.425 6.425 16 C -0.138 4.138 17 H 0.118 0.882 18 C -0.154 4.154 19 C -0.145 4.145 20 C -0.108 4.108 21 H 0.132 0.868 22 C 0.309 3.691 23 O -0.386 6.386 24 O -0.277 6.277 25 C -0.060 4.060 26 C -0.132 4.132 27 H 0.071 0.929 28 H 0.049 0.951 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.228 0.772 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.099 0.901 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.118 0.882 41 H 0.093 0.907 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -16.022 3.891 -14.141 21.721 hybrid contribution -0.242 -0.458 0.461 0.693 sum -16.263 3.434 -13.680 21.527 Atomic orbital electron populations 1.21879 0.96948 0.98953 1.02336 1.22280 0.94317 1.00024 1.01023 1.19136 0.95536 0.88472 0.83035 0.93386 1.21059 0.88671 1.39703 1.07783 0.90224 1.24834 0.94855 0.95167 0.97682 1.69867 1.08691 1.44579 1.29849 0.86904 0.80994 0.79943 0.80893 1.20269 1.22203 1.18456 1.46150 1.14842 1.55991 1.17839 1.20279 0.82450 0.79081 0.88987 1.90668 1.51424 1.59842 1.40533 1.21953 0.98537 0.98914 0.94358 0.88206 1.22150 0.96483 0.99806 0.96919 1.22312 0.96078 0.94588 1.01549 1.22099 0.86200 1.01203 1.01281 0.86783 1.23739 0.91181 0.72365 0.81813 1.90698 1.73325 1.44656 1.29897 1.86514 1.20993 1.83003 1.37236 1.23254 0.76726 1.02574 1.03421 1.22258 0.93851 1.02368 0.94767 0.92880 0.95072 0.92886 0.92360 0.92865 0.92308 0.77248 0.90309 0.90342 0.90971 0.90065 0.91973 0.91896 0.88194 0.90653 0.87886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 8.52 37.16 0.32 -2.60 16 2 C -0.14 -3.05 5.11 -26.73 -0.14 -3.18 16 3 C 0.24 5.67 1.83 -69.08 -0.13 5.54 16 4 H 0.05 1.26 6.64 -51.93 -0.34 0.92 16 5 C -0.53 -14.29 9.31 -34.44 -0.32 -14.62 16 6 H 0.08 2.23 7.98 -52.49 -0.42 1.81 16 7 C 0.08 2.19 5.45 -17.82 -0.10 2.09 16 8 N -0.89 -26.40 13.96 55.43 0.77 -25.63 16 9 Si 0.88 21.86 24.41 -169.99 -4.15 17.71 16 10 H -0.28 -6.62 6.83 56.52 0.39 -6.23 16 11 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 12 H -0.26 -6.42 6.53 56.52 0.37 -6.05 16 13 N -0.70 -13.34 4.91 -54.93 -0.27 -13.61 16 14 C 0.51 9.09 5.48 -10.98 -0.06 9.03 16 15 O -0.55 -11.84 12.54 5.56 0.07 -11.77 16 16 C -0.12 -1.48 3.30 -90.65 -0.30 -1.77 16 17 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 18 C -0.12 -1.18 6.41 -25.61 -0.16 -1.35 16 19 C -0.11 -1.02 6.26 -25.07 -0.16 -1.18 16 20 C -0.09 -0.91 3.40 -89.80 -0.31 -1.21 16 21 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 22 C 0.47 5.67 7.26 36.00 0.26 5.93 16 23 O -0.50 -7.76 15.47 -18.75 -0.29 -8.05 16 24 O -0.36 -3.73 10.57 -39.26 -0.41 -4.14 16 25 C 0.03 0.26 10.56 101.05 1.07 1.33 16 26 C -0.09 -1.23 5.22 -25.09 -0.13 -1.36 16 27 H 0.05 1.04 5.64 -51.93 -0.29 0.75 16 28 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.05 1.15 7.85 -51.93 -0.41 0.74 16 30 H 0.06 1.22 8.14 -51.92 -0.42 0.79 16 31 H 0.05 1.25 3.21 -51.93 -0.17 1.08 16 32 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 33 H 0.39 6.58 8.54 -40.82 -0.35 6.23 16 34 H 0.08 0.62 8.14 -51.92 -0.42 0.20 16 35 H 0.08 0.91 7.62 -51.93 -0.40 0.51 16 36 H 0.07 0.77 8.04 -51.93 -0.42 0.36 16 37 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 39 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 40 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.10 1.71 6.17 -51.93 -0.32 1.39 16 LS Contribution 331.84 15.07 5.00 5.00 Total: -1.00 -33.07 331.84 -5.96 -39.02 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -6.52 Total: 4.81 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: -0.15 Total: -3.35 kcal Atomic # 7 Polarization: -39.74 SS G_CDS: 0.50 Total: -39.24 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: -0.64 Total: -23.96 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.15 Total: 17.71 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.07 -5.96 -39.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001447356711.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.332 kcal (2) G-P(sol) polarization free energy of solvation -33.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds