Wall clock time and date at job start Tue Mar 31 2020 05:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47691 * 2 1 4 4 H 1.08997 * 109.46977 * 305.00368 * 3 2 1 5 5 C 1.50700 * 109.47449 * 184.99954 * 3 2 1 6 6 H 1.08003 * 119.99367 * 239.99778 * 5 3 2 7 7 C 1.37871 * 119.99877 * 60.00382 * 5 3 2 8 8 N 1.31515 * 120.00019 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99829 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47390 * 59.99428 * 9 7 5 11 11 H 1.48500 * 109.47286 * 179.97438 * 9 7 5 12 12 H 1.48508 * 109.46671 * 299.99101 * 9 7 5 13 13 N 1.46502 * 109.47043 * 64.99684 * 3 2 1 14 14 C 1.34782 * 120.00473 * 275.00668 * 13 3 2 15 15 O 1.21288 * 119.99248 * 359.97438 * 14 13 3 16 16 C 1.50700 * 120.00303 * 179.97438 * 14 13 3 17 17 H 1.09000 * 110.01371 * 301.38817 * 16 14 13 18 18 C 1.53875 * 110.07072 * 62.80822 * 16 14 13 19 19 C 1.54267 * 106.59735 * 119.30787 * 18 16 14 20 20 C 1.54884 * 104.19408 * 23.60650 * 19 18 16 21 21 H 1.09002 * 110.91688 * 80.45021 * 20 19 18 22 22 C 1.50706 * 110.75527 * 203.73834 * 20 19 18 23 23 O 1.20826 * 119.99287 * 113.32844 * 22 20 19 24 24 O 1.34228 * 120.00394 * 293.33342 * 22 20 19 25 25 C 1.45198 * 116.99985 * 179.97438 * 24 22 20 26 26 C 1.54264 * 110.02883 * 179.97438 * 16 14 13 27 27 H 1.08998 * 109.46949 * 59.99545 * 1 2 3 28 28 H 1.08995 * 109.47700 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47193 * 300.00423 * 1 2 3 30 30 H 1.08996 * 109.47340 * 240.00006 * 2 1 3 31 31 H 1.09008 * 109.47271 * 119.99745 * 2 1 3 32 32 H 0.97000 * 119.99522 * 180.02562 * 8 7 5 33 33 H 0.97001 * 120.00411 * 95.00115 * 13 3 2 34 34 H 1.08998 * 110.02593 * 238.59218 * 18 16 14 35 35 H 1.08994 * 110.03365 * 0.02562 * 18 16 14 36 36 H 1.08995 * 110.48466 * 264.93026 * 19 18 16 37 37 H 1.09000 * 110.48085 * 142.28666 * 19 18 16 38 38 H 1.09002 * 109.47379 * 299.99940 * 25 24 22 39 39 H 1.09001 * 109.46782 * 180.02562 * 25 24 22 40 40 H 1.09004 * 109.47085 * 60.00143 * 25 24 22 41 41 H 1.09003 * 110.48433 * 98.37800 * 26 16 14 42 42 H 1.08999 * 110.59997 * 335.78583 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5420 1.4442 -0.1238 6 1 4.1472 1.8888 0.6524 7 6 4.1433 0.8783 -1.2280 8 7 3.4062 0.3366 -2.1729 9 14 6.0050 0.8799 -1.3811 10 1 6.5966 0.1451 -0.2343 11 1 6.3979 0.2156 -2.6498 12 1 6.5005 2.2799 -1.3808 13 7 1.6525 2.0975 1.2518 14 6 0.4352 2.6644 1.3670 15 8 -0.3392 2.6327 0.4341 16 6 0.0363 3.3377 2.6549 17 1 0.0880 2.6265 3.4793 18 6 0.9614 4.5355 2.9332 19 6 0.0613 5.7877 2.9721 20 6 -1.3425 5.2357 3.3235 21 1 -1.4322 5.0537 4.3945 22 6 -2.4202 6.1777 2.8520 23 8 -3.1727 5.8409 1.9686 24 8 -2.5442 7.3907 3.4132 25 6 -3.6041 8.2452 2.9087 26 6 -1.3934 3.9044 2.5341 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.8293 -0.0618 -2.9495 33 1 2.2719 2.1231 1.9978 34 1 1.4620 4.4055 3.8926 35 1 1.6990 4.6305 2.1364 36 1 0.0460 6.2769 1.9982 37 1 0.4031 6.4793 3.7421 38 1 -3.4477 8.4290 1.8457 39 1 -3.5932 9.1934 3.4464 40 1 -4.5666 7.7551 3.0550 41 1 -2.1137 3.2215 2.9845 42 1 -1.6456 4.0895 1.4900 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001447356724.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:17 Heat of formation + Delta-G solvation = -145.372356 kcal Electronic energy + Delta-G solvation = -22940.260326 eV Core-core repulsion = 19498.570636 eV Total energy + Delta-G solvation = -3441.689690 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.77746 -39.43341 -37.24910 -36.31790 -34.92331 -32.39033 -31.15558 -29.87694 -28.80098 -27.71882 -26.77161 -23.40617 -22.65067 -21.60503 -20.20688 -19.62145 -19.09077 -17.96166 -17.11108 -16.68183 -16.41093 -15.86671 -15.41702 -15.23312 -14.42980 -14.20070 -13.75672 -13.71175 -13.21979 -13.11960 -12.68784 -12.40202 -12.19474 -12.02514 -11.68764 -11.45802 -11.23048 -11.19168 -11.07938 -11.00768 -10.96562 -10.82165 -10.79540 -10.62358 -10.39129 -10.29775 -10.12908 -9.60084 -9.03754 -8.85924 -8.47645 -7.77091 -6.10715 -4.20332 2.11817 2.57180 3.25686 3.31310 3.32036 3.44914 4.09115 4.33718 4.39553 4.43545 4.79430 4.90503 4.97208 5.00794 5.20299 5.23301 5.29992 5.34123 5.36823 5.50343 5.56194 5.74095 5.85350 5.97978 6.10810 6.22831 6.28153 6.42185 6.48537 6.51904 6.69715 7.06868 7.23469 7.40486 7.50814 7.64017 7.66025 7.76625 7.92989 8.20847 8.71901 8.80353 9.19892 9.47480 10.94493 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.027764 B = 0.003660 C = 0.003456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.261984 B = 7648.670619 C = 8099.154352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.048 0.952 5 C -0.534 4.534 6 H 0.060 0.940 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.708 5.708 14 C 0.505 3.495 15 O -0.545 6.545 16 C -0.117 4.117 17 H 0.096 0.904 18 C -0.115 4.115 19 C -0.108 4.108 20 C -0.089 4.089 21 H 0.113 0.887 22 C 0.466 3.534 23 O -0.499 6.499 24 O -0.361 6.361 25 C 0.034 3.966 26 C -0.094 4.094 27 H 0.049 0.951 28 H 0.022 0.978 29 H 0.038 0.962 30 H 0.098 0.902 31 H 0.030 0.970 32 H 0.265 0.735 33 H 0.387 0.613 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.062 0.938 39 H 0.099 0.901 40 H 0.061 0.939 41 H 0.073 0.927 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.578 11.130 14.014 19.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.066 0.934 5 C -0.573 4.573 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.202 1.202 13 N -0.356 5.356 14 C 0.290 3.710 15 O -0.423 6.423 16 C -0.138 4.138 17 H 0.114 0.886 18 C -0.153 4.153 19 C -0.145 4.145 20 C -0.108 4.108 21 H 0.131 0.869 22 C 0.309 3.691 23 O -0.385 6.385 24 O -0.278 6.278 25 C -0.060 4.060 26 C -0.132 4.132 27 H 0.068 0.932 28 H 0.041 0.959 29 H 0.057 0.943 30 H 0.116 0.884 31 H 0.049 0.951 32 H 0.075 0.925 33 H 0.219 0.781 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.098 0.902 38 H 0.081 0.919 39 H 0.118 0.882 40 H 0.080 0.920 41 H 0.092 0.908 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -8.347 10.909 12.839 18.802 hybrid contribution 1.104 0.001 0.193 1.120 sum -7.244 10.910 13.032 18.475 Atomic orbital electron populations 1.21836 0.98348 0.97975 1.01272 1.21932 0.92602 0.99900 1.02190 1.18758 0.94069 0.89153 0.81163 0.93401 1.21201 0.90791 1.39050 1.06228 0.92184 1.24887 0.98530 0.94856 0.95421 1.69890 1.35179 1.37528 1.09350 0.86530 0.84968 0.78280 0.77432 1.20191 1.21167 1.20207 1.46473 1.14680 1.56007 1.18431 1.20208 0.82733 0.79187 0.88913 1.90673 1.51418 1.59748 1.40507 1.21964 0.96069 0.98063 0.97734 0.88619 1.22143 0.97738 0.92499 1.02956 1.22311 0.91681 0.98000 1.02533 1.22103 0.92436 0.93822 1.02406 0.86897 1.23755 0.84482 0.81064 0.79815 1.90699 1.43115 1.75734 1.28981 1.86513 1.52886 1.27184 1.61201 1.23250 0.89118 0.93215 1.00396 1.22252 0.95226 0.92645 1.03079 0.93164 0.95929 0.94269 0.88374 0.95109 0.92532 0.78055 0.90546 0.90163 0.90909 0.90159 0.91881 0.88230 0.91993 0.90807 0.87847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 8.52 37.15 0.32 -2.78 16 2 C -0.13 -3.10 5.45 -26.73 -0.15 -3.25 16 3 C 0.27 6.74 2.24 -69.08 -0.15 6.59 16 4 H 0.05 1.40 7.58 -51.93 -0.39 1.00 16 5 C -0.53 -13.95 8.73 -34.44 -0.30 -14.25 16 6 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.73 11.29 55.43 0.63 -24.11 16 9 Si 0.90 20.49 29.54 -169.99 -5.02 15.47 16 10 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 11 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 13 N -0.71 -14.22 4.92 -54.93 -0.27 -14.49 16 14 C 0.51 9.67 5.48 -10.98 -0.06 9.61 16 15 O -0.54 -12.66 12.55 5.55 0.07 -12.59 16 16 C -0.12 -1.59 3.30 -90.65 -0.30 -1.89 16 17 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 18 C -0.12 -1.30 6.41 -25.61 -0.16 -1.47 16 19 C -0.11 -1.13 6.26 -25.07 -0.16 -1.28 16 20 C -0.09 -0.98 3.40 -89.80 -0.31 -1.28 16 21 H 0.11 0.94 8.14 -51.93 -0.42 0.51 16 22 C 0.47 6.01 7.26 36.01 0.26 6.27 16 23 O -0.50 -8.13 15.47 -18.75 -0.29 -8.42 16 24 O -0.36 -3.95 10.57 -39.25 -0.41 -4.37 16 25 C 0.03 0.28 10.56 101.05 1.07 1.35 16 26 C -0.09 -1.31 5.22 -25.09 -0.13 -1.44 16 27 H 0.05 1.22 7.85 -51.93 -0.41 0.81 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.04 0.85 5.65 -51.93 -0.29 0.56 16 30 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 31 H 0.03 0.71 8.14 -51.92 -0.42 0.29 16 32 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 33 H 0.39 6.71 8.54 -40.82 -0.35 6.36 16 34 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.08 1.05 7.62 -51.93 -0.40 0.66 16 36 H 0.07 0.86 8.04 -51.93 -0.42 0.45 16 37 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.55 8.13 -51.93 -0.42 0.12 16 39 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 41 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.10 1.84 6.18 -51.93 -0.32 1.52 16 LS Contribution 338.61 15.07 5.10 5.10 Total: -1.00 -31.95 338.61 -7.02 -38.96 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -6.65 Total: 6.60 kcal Atomic # 6 Polarization: -1.99 SS G_CDS: -0.17 Total: -2.16 kcal Atomic # 7 Polarization: -38.96 SS G_CDS: 0.36 Total: -38.60 kcal Atomic # 8 Polarization: -24.74 SS G_CDS: -0.64 Total: -25.38 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.95 -7.02 -38.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001447356724.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.408 kcal (2) G-P(sol) polarization free energy of solvation -31.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds