Wall clock time and date at job start Tue Mar 31 2020 06:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47286 * 2 1 4 4 C 1.53003 * 109.46643 * 240.00690 * 2 1 3 5 5 C 1.50696 * 109.47553 * 65.00036 * 4 2 1 6 6 H 1.08004 * 120.00074 * 359.97438 * 5 4 2 7 7 C 1.37877 * 120.00308 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99660 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00107 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47179 * 59.99729 * 9 7 5 11 11 H 1.48495 * 109.46798 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.46793 * 299.99408 * 9 7 5 13 13 C 1.52991 * 109.47816 * 120.00368 * 2 1 3 14 14 N 1.46900 * 109.47070 * 295.79407 * 13 2 1 15 15 C 1.48504 * 111.00073 * 294.31946 * 14 13 2 16 16 C 1.54259 * 104.84631 * 200.62144 * 15 14 13 17 17 H 1.09001 * 112.65967 * 147.07139 * 16 15 14 18 18 C 1.54270 * 108.84096 * 273.53769 * 16 15 14 19 19 O 1.44376 * 105.02209 * 86.97574 * 18 16 15 20 20 C 1.44388 * 105.25655 * 40.78387 * 19 18 16 21 21 C 1.54385 * 104.92017 * 319.24956 * 20 19 18 22 22 C 1.50704 * 112.67994 * 147.18184 * 21 20 19 23 23 O 1.20827 * 120.00078 * 242.51987 * 22 21 20 24 24 O 1.34227 * 119.99983 * 62.52259 * 22 21 20 25 25 C 1.48512 * 111.00226 * 178.92006 * 14 13 2 26 26 H 1.08992 * 109.47556 * 64.83179 * 1 2 3 27 27 H 1.08998 * 109.46787 * 184.83415 * 1 2 3 28 28 H 1.08999 * 109.46703 * 304.82524 * 1 2 3 29 29 H 1.09003 * 109.46854 * 184.99444 * 4 2 1 30 30 H 1.08999 * 109.47252 * 304.99399 * 4 2 1 31 31 H 0.97003 * 120.00140 * 179.97438 * 8 7 5 32 32 H 1.08998 * 109.47555 * 175.79271 * 13 2 1 33 33 H 1.09010 * 109.47197 * 55.79159 * 13 2 1 34 34 H 1.09002 * 110.38060 * 319.49254 * 15 14 13 35 35 H 1.08996 * 110.38727 * 81.74309 * 15 14 13 36 36 H 1.09007 * 110.28046 * 328.09474 * 18 16 15 37 37 H 1.09003 * 110.41317 * 205.93026 * 18 16 15 38 38 H 1.08996 * 110.34902 * 200.38569 * 20 19 18 39 39 H 1.08997 * 110.34459 * 78.10983 * 20 19 18 40 40 H 0.96704 * 116.99627 * 180.02562 * 24 22 21 41 41 H 1.08992 * 110.38566 * 278.14834 * 25 14 13 42 42 H 1.09004 * 110.37884 * 40.40925 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 1.6412 0.0572 -2.4766 6 1 1.0799 0.9744 -2.3757 7 6 1.9921 -0.4019 -3.7284 8 7 2.6753 -1.5190 -3.8514 9 14 1.4973 0.5626 -5.2497 10 1 2.0894 1.9230 -5.1876 11 1 1.9923 -0.1373 -6.4622 12 1 0.0173 0.6690 -5.3086 13 6 2.0401 -0.7213 1.2491 14 7 1.6352 0.0273 2.4464 15 6 2.3034 1.3526 2.4968 16 6 2.2276 1.7774 3.9778 17 1 3.0903 2.3656 4.2906 18 6 0.8824 2.4917 4.2230 19 8 -0.0516 1.4350 4.5317 20 6 0.6746 0.5228 5.3834 21 6 2.0869 0.4407 4.7651 22 6 3.1636 0.2402 5.8002 23 8 4.0202 1.0789 5.9512 24 8 3.1712 -0.8700 6.5545 25 6 2.0917 -0.6581 3.6823 26 1 -0.3634 0.4370 -0.9300 27 1 -0.3633 -1.0240 0.0866 28 1 -0.3633 0.5869 0.8436 29 1 3.1262 -0.7993 -1.2058 30 1 1.6053 -1.7197 -1.2954 31 1 2.9219 -1.8423 -4.7321 32 1 3.1275 -0.7870 1.2121 33 1 1.6166 -1.7250 1.2876 34 1 3.3426 1.2661 2.1793 35 1 1.7738 2.0689 1.8688 36 1 0.5686 3.0248 3.3254 37 1 0.9658 3.1814 5.0629 38 1 0.2009 -0.4588 5.3785 39 1 0.7278 0.9140 6.3994 40 1 3.8815 -0.9538 7.2053 41 1 1.4013 -1.4579 3.9500 42 1 3.0977 -1.0553 3.5466 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001573578895.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:08 Heat of formation + Delta-G solvation = -135.485777 kcal Electronic energy + Delta-G solvation = -23386.052771 eV Core-core repulsion = 19944.791795 eV Total energy + Delta-G solvation = -3441.260976 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.50735 -39.64160 -37.29253 -36.48375 -34.86683 -32.53710 -31.28625 -30.99985 -26.95893 -26.21892 -25.96006 -24.39849 -23.58687 -22.23739 -21.09755 -20.01893 -18.73952 -18.29229 -17.51431 -16.31003 -16.26607 -16.10845 -15.37760 -15.04021 -14.85543 -14.45110 -14.40470 -13.93893 -13.49178 -13.31515 -12.91747 -12.49520 -12.31753 -12.02881 -11.83682 -11.78702 -11.52263 -11.38166 -11.29140 -11.26454 -10.91185 -10.82306 -10.78778 -10.66446 -10.26491 -10.22954 -9.81973 -9.62382 -9.13763 -8.95875 -8.31544 -8.25934 -5.96562 -3.97637 1.78880 2.55299 3.35440 3.39778 3.42303 3.78460 3.80840 4.17953 4.25482 4.49631 4.54912 4.81340 4.86454 4.93420 5.27590 5.34108 5.35316 5.39242 5.45384 5.53890 5.57868 5.63019 5.69077 5.80075 5.89445 5.96504 6.10088 6.15472 6.39654 6.50970 6.60669 6.68865 6.95148 7.01471 7.16450 7.27015 7.35042 7.51399 7.69949 7.85880 8.03442 8.47461 9.08419 9.65673 11.14988 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.029612 B = 0.003701 C = 0.003546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.339876 B = 7562.878394 C = 7894.500330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.079 4.079 3 H 0.055 0.945 4 C 0.027 3.973 5 C -0.512 4.512 6 H 0.056 0.944 7 C 0.056 3.944 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.049 3.951 14 N -0.491 5.491 15 C 0.040 3.960 16 C -0.113 4.113 17 H 0.113 0.887 18 C 0.057 3.943 19 O -0.347 6.347 20 C 0.076 3.924 21 C -0.098 4.098 22 C 0.504 3.496 23 O -0.508 6.508 24 O -0.509 6.509 25 C 0.054 3.946 26 H 0.055 0.945 27 H 0.038 0.962 28 H 0.043 0.957 29 H 0.011 0.989 30 H 0.016 0.984 31 H 0.260 0.740 32 H 0.031 0.969 33 H 0.073 0.927 34 H 0.048 0.952 35 H 0.094 0.906 36 H 0.102 0.898 37 H 0.057 0.943 38 H 0.106 0.894 39 H 0.057 0.943 40 H 0.412 0.588 41 H 0.095 0.905 42 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.900 3.429 21.550 21.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.098 4.098 3 H 0.073 0.927 4 C -0.010 4.010 5 C -0.551 4.551 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.202 1.202 13 C -0.078 4.078 14 N -0.214 5.214 15 C -0.088 4.088 16 C -0.132 4.132 17 H 0.131 0.869 18 C -0.020 4.020 19 O -0.264 6.264 20 C -0.002 4.002 21 C -0.100 4.100 22 C 0.345 3.655 23 O -0.396 6.396 24 O -0.321 6.321 25 C -0.074 4.074 26 H 0.074 0.926 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.030 0.970 30 H 0.034 0.966 31 H 0.069 0.931 32 H 0.049 0.951 33 H 0.091 0.909 34 H 0.066 0.934 35 H 0.112 0.888 36 H 0.120 0.880 37 H 0.075 0.925 38 H 0.124 0.876 39 H 0.075 0.925 40 H 0.271 0.729 41 H 0.113 0.887 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.721 3.592 21.045 21.418 hybrid contribution 1.610 0.219 -0.402 1.674 sum -0.111 3.811 20.643 20.992 Atomic orbital electron populations 1.21587 0.95495 1.00459 1.00485 1.21185 0.96152 0.98920 0.93506 0.92706 1.19119 0.95826 0.95619 0.90453 1.21188 1.34632 1.08290 0.90962 0.92605 1.25013 0.95324 0.95082 0.99069 1.69957 1.39081 1.21226 1.23462 0.86694 0.78935 0.80088 0.82499 1.20333 1.21395 1.20232 1.22550 0.97583 0.97892 0.89802 1.65507 1.52798 1.02077 1.01048 1.23173 0.98160 0.93482 0.93974 1.23424 1.00347 0.93790 0.95597 0.86904 1.23406 0.87123 0.90246 1.01183 1.89222 1.34240 1.35014 1.67971 1.23230 0.87829 0.96105 0.93008 1.22565 0.94196 0.99462 0.93734 1.22716 0.84654 0.78382 0.79759 1.90721 1.37912 1.43884 1.67056 1.84544 1.55223 1.42600 1.49712 1.23039 1.00037 0.94884 0.89479 0.92627 0.94240 0.93782 0.97040 0.96556 0.93060 0.95087 0.90852 0.93358 0.88770 0.88014 0.92469 0.87614 0.92502 0.72943 0.88670 0.93592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.39 8.90 37.16 0.33 -2.06 16 2 C -0.08 -1.59 2.28 -90.62 -0.21 -1.80 16 3 H 0.05 1.12 6.90 -51.93 -0.36 0.76 16 4 C 0.03 0.70 4.45 -27.88 -0.12 0.57 16 5 C -0.51 -14.31 8.34 -34.44 -0.29 -14.59 16 6 H 0.06 1.52 7.08 -52.48 -0.37 1.15 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -27.00 13.29 55.43 0.74 -26.26 16 9 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 C 0.05 0.84 4.22 -3.83 -0.02 0.82 16 14 N -0.49 -7.09 4.76 -230.22 -1.10 -8.19 16 15 C 0.04 0.54 4.98 -2.28 -0.01 0.52 16 16 C -0.11 -1.28 3.78 -87.82 -0.33 -1.61 16 17 H 0.11 1.28 7.03 -51.93 -0.36 0.91 16 18 C 0.06 0.61 7.04 37.82 0.27 0.87 16 19 O -0.35 -4.33 11.50 -35.23 -0.41 -4.73 16 20 C 0.08 0.77 6.62 37.88 0.25 1.02 16 21 C -0.10 -1.06 1.03 -152.79 -0.16 -1.22 16 22 C 0.50 5.30 7.11 36.01 0.26 5.56 16 23 O -0.51 -6.65 16.45 -18.75 -0.31 -6.96 16 24 O -0.51 -3.88 13.42 -39.25 -0.53 -4.41 16 25 C 0.05 0.66 5.47 -2.27 -0.01 0.64 16 26 H 0.05 1.16 6.82 -51.93 -0.35 0.81 16 27 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.04 0.78 7.87 -51.93 -0.41 0.37 16 29 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 32 H 0.03 0.54 7.96 -51.93 -0.41 0.13 16 33 H 0.07 1.25 8.14 -51.92 -0.42 0.83 16 34 H 0.05 0.68 7.89 -51.93 -0.41 0.27 16 35 H 0.09 1.28 6.95 -51.93 -0.36 0.92 16 36 H 0.10 1.04 7.51 -51.92 -0.39 0.65 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.11 0.97 7.50 -51.93 -0.39 0.58 16 39 H 0.06 0.50 7.98 -51.93 -0.41 0.08 16 40 H 0.41 1.35 9.10 45.56 0.41 1.76 16 41 H 0.10 1.06 7.51 -51.93 -0.39 0.67 16 42 H 0.05 0.57 7.83 -51.93 -0.41 0.16 16 LS Contribution 334.90 15.07 5.05 5.05 Total: -1.00 -32.60 334.90 -7.58 -40.18 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: -5.87 Total: -1.61 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: -0.14 Total: -9.76 kcal Atomic # 7 Polarization: -34.09 SS G_CDS: -0.36 Total: -34.45 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: -1.24 Total: -16.10 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.60 -7.58 -40.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573578895.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.306 kcal (2) G-P(sol) polarization free energy of solvation -32.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds