Wall clock time and date at job start Tue Mar 31 2020 06:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 115.55412 * 2 1 4 4 C 1.53082 * 117.48949 * 214.27837 * 2 1 3 5 5 C 1.52998 * 117.49749 * 145.67855 * 2 1 3 6 6 C 1.50697 * 117.49878 * 359.97262 * 5 2 1 7 7 O 1.20826 * 120.00049 * 359.91276 * 6 5 2 8 8 O 1.34232 * 120.00158 * 179.91455 * 6 5 2 9 9 C 1.50703 * 117.49715 * 214.97403 * 5 2 1 10 10 O 1.21278 * 119.99985 * 0.08994 * 9 5 2 11 11 N 1.34779 * 119.99944 * 180.08706 * 9 5 2 12 12 C 1.46499 * 119.99872 * 180.02562 * 11 9 5 13 13 C 1.53000 * 109.46840 * 180.02562 * 12 11 9 14 14 C 1.53002 * 109.47233 * 299.99500 * 13 12 11 15 15 C 1.52996 * 109.47328 * 59.99969 * 13 12 11 16 16 C 1.53001 * 109.46886 * 180.02562 * 13 12 11 17 17 C 1.50697 * 109.47291 * 179.97438 * 16 13 12 18 18 H 1.08006 * 119.99920 * 359.97438 * 17 16 13 19 19 C 1.37876 * 120.00428 * 179.97438 * 17 16 13 20 20 N 1.31519 * 119.99563 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00432 * 180.02562 * 19 17 16 22 22 H 1.48508 * 109.47282 * 89.99593 * 21 19 17 23 23 H 1.48498 * 109.47211 * 210.00040 * 21 19 17 24 24 H 1.48506 * 109.46856 * 330.00220 * 21 19 17 25 25 H 1.09006 * 109.46675 * 274.32921 * 1 2 3 26 26 H 1.09000 * 109.46691 * 34.32045 * 1 2 3 27 27 H 1.08998 * 109.47507 * 154.32748 * 1 2 3 28 28 H 1.09001 * 117.51207 * 145.03845 * 4 2 1 29 29 H 1.09000 * 117.49254 * 359.97438 * 4 2 1 30 30 H 0.96701 * 117.00459 * 179.97438 * 8 6 5 31 31 H 0.97000 * 119.99708 * 359.97438 * 11 9 5 32 32 H 1.09002 * 109.47391 * 59.99686 * 12 11 9 33 33 H 1.09001 * 109.46813 * 299.99742 * 12 11 9 34 34 H 1.09000 * 109.46986 * 60.00203 * 14 13 12 35 35 H 1.08993 * 109.47662 * 180.02562 * 14 13 12 36 36 H 1.09002 * 109.47075 * 300.00932 * 14 13 12 37 37 H 1.08992 * 109.47554 * 59.99639 * 15 13 12 38 38 H 1.09004 * 109.47108 * 179.97438 * 15 13 12 39 39 H 1.09000 * 109.46870 * 299.99783 * 15 13 12 40 40 H 1.09001 * 109.47109 * 299.99380 * 16 13 12 41 41 H 1.09002 * 109.47508 * 59.99571 * 16 13 12 42 42 H 0.97000 * 119.99425 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2366 -1.1221 -0.7648 5 6 2.2364 -1.1208 0.7652 6 6 1.3720 -2.1399 1.4617 7 8 0.1683 -2.0517 1.4040 8 8 1.9392 -3.1457 2.1463 9 6 3.5293 -0.7809 1.4609 10 8 3.9710 0.3471 1.4023 11 7 4.1947 -1.7303 2.1482 12 6 5.4512 -1.3996 2.8249 13 6 5.9969 -2.6461 3.5246 14 6 4.9783 -3.1404 4.5536 15 6 6.2490 -3.7433 2.4886 16 6 7.3089 -2.3006 4.2319 17 6 7.8461 -3.5280 4.9216 18 1 7.3056 -4.4612 4.8618 19 6 9.0277 -3.4599 5.6290 20 7 9.6861 -2.3237 5.7013 21 14 9.6940 -4.9816 6.4833 22 1 10.5827 -5.7227 5.5526 23 1 10.4645 -4.5764 7.6864 24 1 8.5643 -5.8555 6.8901 25 1 -0.3633 0.0776 1.0248 26 1 -0.3633 0.8488 -0.5794 27 1 -0.3634 -0.9262 -0.4452 28 1 3.1719 -0.8770 -1.2682 29 1 1.6112 -1.8600 -1.2672 30 1 1.3438 -3.7745 2.5767 31 1 3.8412 -2.6324 2.1953 32 1 5.2718 -0.6176 3.5626 33 1 6.1771 -1.0479 2.0917 34 1 4.0433 -3.3864 4.0502 35 1 5.3671 -4.0281 5.0524 36 1 4.7987 -2.3586 5.2916 37 1 6.9746 -3.3912 1.7556 38 1 6.6382 -4.6312 2.9871 39 1 5.3141 -3.9893 1.9851 40 1 8.0349 -1.9482 3.4991 41 1 7.1289 -1.5190 4.9700 42 1 10.5175 -2.2759 6.1987 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574282387.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:23 Heat of formation + Delta-G solvation = -119.762830 kcal Electronic energy + Delta-G solvation = -23151.291913 eV Core-core repulsion = 19710.712735 eV Total energy + Delta-G solvation = -3440.579178 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.29102 -39.42296 -37.85384 -36.77869 -35.96355 -33.60641 -32.09405 -29.36557 -27.22414 -26.66430 -26.50320 -25.30035 -23.18272 -22.23173 -21.01636 -20.04346 -19.08422 -17.96839 -17.27836 -16.37521 -16.14910 -15.65321 -15.46230 -14.94698 -14.56410 -14.50691 -14.07669 -13.50541 -13.35967 -13.20579 -12.92906 -12.86656 -12.63030 -12.17426 -12.06457 -11.91534 -11.82884 -11.17494 -11.03964 -11.00724 -10.85339 -10.71085 -10.63251 -10.41100 -10.33969 -10.25643 -9.87943 -9.86302 -9.17350 -8.93241 -8.74654 -8.36504 -6.00614 -4.01841 1.67387 2.37231 2.70596 3.22429 3.30253 3.37406 3.39033 3.41110 4.17145 4.34812 4.44334 4.63170 4.76461 5.05541 5.30584 5.34976 5.39114 5.50798 5.53629 5.61841 5.64563 5.76700 5.82451 6.04973 6.19037 6.23788 6.26130 6.26671 6.39357 6.55679 6.63315 6.75934 7.05816 7.07233 7.12301 7.53013 7.63336 7.75241 7.75730 7.98187 8.35213 8.40790 9.02920 9.61268 11.10883 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.034908 B = 0.003652 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.915173 B = 7665.574487 C = 8093.422928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.082 4.082 3 H 0.133 0.867 4 C -0.120 4.120 5 C -0.181 4.181 6 C 0.523 3.477 7 O -0.500 6.500 8 O -0.511 6.511 9 C 0.546 3.454 10 O -0.538 6.538 11 N -0.706 5.706 12 C 0.126 3.874 13 C -0.072 4.072 14 C -0.128 4.128 15 C -0.128 4.128 16 C 0.036 3.964 17 C -0.511 4.511 18 H 0.060 0.940 19 C 0.056 3.944 20 N -0.895 5.895 21 Si 0.889 3.111 22 H -0.282 1.282 23 H -0.288 1.288 24 H -0.275 1.275 25 H 0.070 0.930 26 H 0.061 0.939 27 H 0.065 0.935 28 H 0.117 0.883 29 H 0.112 0.888 30 H 0.418 0.582 31 H 0.409 0.591 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.033 0.967 35 H 0.066 0.934 36 H 0.046 0.954 37 H 0.047 0.953 38 H 0.067 0.933 39 H 0.030 0.970 40 H 0.018 0.982 41 H 0.018 0.982 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.189 -0.561 -11.387 20.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.100 4.100 3 H 0.151 0.849 4 C -0.158 4.158 5 C -0.186 4.186 6 C 0.365 3.635 7 O -0.388 6.388 8 O -0.325 6.325 9 C 0.329 3.671 10 O -0.415 6.415 11 N -0.361 5.361 12 C 0.003 3.997 13 C -0.072 4.072 14 C -0.186 4.186 15 C -0.185 4.185 16 C -0.001 4.001 17 C -0.549 4.549 18 H 0.078 0.922 19 C -0.145 4.145 20 N -0.534 5.534 21 Si 0.717 3.283 22 H -0.208 1.208 23 H -0.214 1.214 24 H -0.199 1.199 25 H 0.089 0.911 26 H 0.080 0.920 27 H 0.084 0.916 28 H 0.136 0.864 29 H 0.130 0.870 30 H 0.279 0.721 31 H 0.249 0.751 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.052 0.948 35 H 0.085 0.915 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.086 0.914 39 H 0.049 0.951 40 H 0.037 0.963 41 H 0.037 0.963 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -16.772 0.583 -11.519 20.355 hybrid contribution 0.080 -1.738 1.016 2.015 sum -16.692 -1.155 -10.503 19.755 Atomic orbital electron populations 1.21490 0.90795 1.02064 1.03049 1.22662 0.96358 0.94357 0.96659 0.84949 1.23328 1.04088 1.01590 0.86773 1.21282 0.98105 1.02164 0.97054 1.21810 0.86542 0.79638 0.75530 1.90733 1.15607 1.73742 1.58711 1.84318 1.45936 1.38549 1.63691 1.18906 0.83568 0.85315 0.79286 1.90714 1.68224 1.20738 1.61868 1.46363 1.24653 1.13763 1.51323 1.21703 0.83510 0.98642 0.95853 1.20897 0.98527 0.92668 0.95132 1.21773 0.96459 1.01976 0.98351 1.21764 0.99032 0.99671 0.98021 1.19094 0.89045 0.97089 0.94920 1.21182 1.06414 0.96007 1.31306 0.92240 1.25016 0.97057 0.95764 0.96674 1.69968 1.16395 1.24869 1.42166 0.86648 0.79062 0.83383 0.79204 1.20775 1.21352 1.19947 0.91092 0.92030 0.91636 0.86437 0.86999 0.72128 0.75066 0.91708 0.91639 0.94846 0.91456 0.93491 0.93388 0.91409 0.95105 0.96333 0.96342 0.93041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.07 8.43 37.16 0.31 -0.76 16 2 C -0.08 -0.83 5.92 -90.58 -0.54 -1.37 16 3 H 0.13 1.41 7.67 -51.93 -0.40 1.01 16 4 C -0.12 -1.08 9.59 -26.69 -0.26 -1.33 16 5 C -0.18 -2.12 2.56 -156.81 -0.40 -2.52 16 6 C 0.52 5.75 7.84 36.00 0.28 6.03 16 7 O -0.50 -6.09 13.87 -18.75 -0.26 -6.35 16 8 O -0.51 -4.53 10.51 -39.26 -0.41 -4.94 16 9 C 0.55 8.28 7.38 -10.98 -0.08 8.20 16 10 O -0.54 -9.87 16.26 5.56 0.09 -9.78 16 11 N -0.71 -10.63 4.77 -60.29 -0.29 -10.91 16 12 C 0.13 2.24 4.56 -4.04 -0.02 2.22 16 13 C -0.07 -1.36 0.54 -154.51 -0.08 -1.44 16 14 C -0.13 -2.25 8.05 37.16 0.30 -1.95 16 15 C -0.13 -2.23 8.05 37.16 0.30 -1.93 16 16 C 0.04 0.88 4.04 -27.88 -0.11 0.76 16 17 C -0.51 -13.46 7.65 -34.44 -0.26 -13.72 16 18 H 0.06 1.50 5.68 -52.48 -0.30 1.21 16 19 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 20 N -0.89 -26.29 13.29 55.43 0.74 -25.56 16 21 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 25 H 0.07 0.75 7.26 -51.93 -0.38 0.37 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.60 7.02 -51.93 -0.36 0.24 16 28 H 0.12 1.00 8.14 -51.93 -0.42 0.57 16 29 H 0.11 0.80 8.05 -51.93 -0.42 0.38 16 30 H 0.42 1.83 9.10 45.56 0.41 2.25 16 31 H 0.41 5.48 3.33 -40.82 -0.14 5.35 16 32 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 33 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.03 0.48 6.86 -51.93 -0.36 0.12 16 35 H 0.07 1.26 6.61 -51.93 -0.34 0.92 16 36 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 39 H 0.03 0.45 6.86 -51.93 -0.36 0.09 16 40 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 338.14 15.07 5.10 5.10 Total: -1.00 -32.20 338.14 -6.21 -38.41 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -5.49 Total: 4.38 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: -0.66 Total: -6.37 kcal Atomic # 7 Polarization: -36.92 SS G_CDS: 0.45 Total: -36.47 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: -0.58 Total: -21.08 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.20 -6.21 -38.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574282387.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.355 kcal (2) G-P(sol) polarization free energy of solvation -32.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds