Wall clock time and date at job start Tue Mar 31 2020 06:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.47331 * 2 1 4 4 C 1.50692 * 109.47253 * 239.99456 * 2 1 3 5 5 H 1.08001 * 120.00654 * 240.00590 * 4 2 1 6 6 C 1.37888 * 119.99946 * 60.00191 * 4 2 1 7 7 N 1.31516 * 119.99566 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 120.00268 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46938 * 60.00084 * 8 6 4 10 10 H 1.48492 * 109.47453 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47215 * 300.00449 * 8 6 4 12 12 C 1.50700 * 109.46648 * 119.99772 * 2 1 3 13 13 O 1.21283 * 119.99697 * 102.36786 * 12 2 1 14 14 N 1.34780 * 120.00080 * 282.36596 * 12 2 1 15 15 C 1.46928 * 120.63025 * 184.27982 * 14 12 2 16 16 C 1.53626 * 108.54148 * 126.36834 * 15 14 12 17 17 C 1.53036 * 109.24190 * 54.85454 * 16 15 14 18 18 C 1.53037 * 109.53975 * 298.50905 * 17 16 15 19 19 H 1.08998 * 109.52800 * 301.39994 * 18 17 16 20 20 C 1.53000 * 109.49890 * 181.31614 * 18 17 16 21 21 C 1.52997 * 109.46930 * 65.15941 * 20 18 17 22 22 C 1.50705 * 109.47138 * 179.97438 * 21 20 18 23 23 O 1.20832 * 119.99889 * 0.02562 * 22 21 20 24 24 O 1.34224 * 120.00051 * 179.97438 * 22 21 20 25 25 C 1.46924 * 120.62824 * 4.55657 * 14 12 2 26 26 H 1.08994 * 109.47632 * 186.89022 * 1 2 3 27 27 H 1.09003 * 109.46940 * 306.89964 * 1 2 3 28 28 H 1.09005 * 109.47047 * 66.89429 * 1 2 3 29 29 H 0.96996 * 119.99644 * 179.97438 * 7 6 4 30 30 H 1.08992 * 109.58604 * 246.20168 * 15 14 12 31 31 H 1.09005 * 109.58427 * 6.62709 * 15 14 12 32 32 H 1.08999 * 109.63454 * 294.86107 * 16 15 14 33 33 H 1.09006 * 109.45373 * 174.74346 * 16 15 14 34 34 H 1.09000 * 109.46212 * 178.48869 * 17 16 15 35 35 H 1.09000 * 109.44788 * 58.52356 * 17 16 15 36 36 H 1.08993 * 109.47163 * 185.16582 * 20 18 17 37 37 H 1.09008 * 109.47037 * 305.16504 * 20 18 17 38 38 H 1.08993 * 109.47721 * 300.00299 * 21 20 18 39 39 H 1.09004 * 109.47234 * 60.00614 * 21 20 18 40 40 H 0.96709 * 117.00126 * 180.02562 * 24 22 21 41 41 H 1.08997 * 109.59095 * 353.37502 * 25 14 12 42 42 H 1.09004 * 109.58029 * 113.79945 * 25 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.8280 -2.5200 -4.0080 10 1 1.8280 -0.4195 -5.2204 11 1 3.8075 -1.1192 -4.0076 12 6 2.0322 -0.7104 1.2305 13 8 2.4464 -1.8473 1.1478 14 7 2.0212 -0.0823 2.4230 15 6 2.5930 -0.7260 3.6135 16 6 3.6189 0.2302 4.2407 17 6 2.9491 1.5783 4.5161 18 6 2.4655 2.1883 3.1985 19 1 3.3113 2.3124 2.5223 20 6 1.8253 3.5509 3.4711 21 6 2.8888 4.5184 3.9944 22 6 2.2585 5.8608 4.2623 23 8 1.0795 6.0265 4.0563 24 8 3.0066 6.8720 4.7307 25 6 1.4315 1.2566 2.5583 26 1 -0.3634 -1.0202 0.1233 27 1 -0.3633 0.6170 0.8218 28 1 -0.3633 0.4033 -0.9453 29 1 0.7096 1.1617 -3.4844 30 1 1.8002 -0.9375 4.3309 31 1 3.0855 -1.6549 3.3256 32 1 4.4542 0.3722 3.5550 33 1 3.9844 -0.1926 5.1766 34 1 3.6666 2.2511 4.9859 35 1 2.0988 1.4318 5.1822 36 1 1.3996 3.9436 2.5478 37 1 1.0374 3.4397 4.2161 38 1 3.3146 4.1257 4.9177 39 1 3.6768 4.6297 3.2495 40 1 2.5578 7.7142 4.8876 41 1 1.1574 1.6364 1.5741 42 1 0.5459 1.2035 3.1915 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588987881.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:19 Heat of formation + Delta-G solvation = -151.298150 kcal Electronic energy + Delta-G solvation = -23018.164686 eV Core-core repulsion = 19576.218035 eV Total energy + Delta-G solvation = -3441.946652 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.48577 -39.60986 -37.38127 -36.34299 -34.21143 -33.81906 -32.14278 -30.36017 -29.84503 -25.57010 -25.19425 -24.88264 -22.76549 -21.79368 -20.82599 -19.92984 -18.36753 -18.21191 -16.81315 -16.39999 -16.34829 -15.87547 -15.21971 -14.64996 -14.51402 -14.48740 -14.06749 -13.53983 -13.35335 -13.19348 -12.90683 -12.65081 -12.32836 -12.09832 -11.89686 -11.74507 -11.45611 -11.23825 -11.03003 -10.93157 -10.80894 -10.74160 -10.64640 -10.57713 -10.44694 -10.26231 -10.23399 -9.95580 -8.97936 -8.56590 -8.25435 -8.02341 -6.01431 -4.04953 2.01998 2.83272 3.37007 3.39612 3.44622 3.69072 3.73424 4.47718 4.53952 4.69472 4.78516 4.95689 4.99048 5.12571 5.28387 5.31317 5.42278 5.50366 5.56217 5.62908 5.69061 5.78697 5.89930 5.96033 6.05267 6.07416 6.19314 6.20764 6.29539 6.36642 6.47700 6.65444 6.88162 6.99238 7.14612 7.46009 7.68299 7.79508 8.00217 8.14459 8.41611 9.01956 9.25056 9.60084 11.05610 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.016748 B = 0.004378 C = 0.003738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.398029 B = 6393.551917 C = 7488.450072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.032 3.968 3 H 0.049 0.951 4 C -0.500 4.500 5 H 0.070 0.930 6 C 0.059 3.941 7 N -0.896 5.896 8 Si 0.900 3.100 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.523 3.477 13 O -0.548 6.548 14 N -0.626 5.626 15 C 0.109 3.891 16 C -0.133 4.133 17 C -0.115 4.115 18 C -0.104 4.104 19 H 0.080 0.920 20 C -0.103 4.103 21 C -0.114 4.114 22 C 0.476 3.524 23 O -0.514 6.514 24 O -0.522 6.522 25 C 0.115 3.885 26 H 0.028 0.972 27 H 0.016 0.984 28 H 0.096 0.904 29 H 0.261 0.739 30 H 0.055 0.945 31 H 0.086 0.914 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.107 0.893 39 H 0.108 0.892 40 H 0.408 0.592 41 H 0.101 0.899 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.481 9.624 16.361 19.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.011 3.989 3 H 0.066 0.934 4 C -0.539 4.539 5 H 0.088 0.912 6 C -0.142 4.142 7 N -0.535 5.535 8 Si 0.727 3.273 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.202 1.202 12 C 0.315 3.685 13 O -0.424 6.424 14 N -0.362 5.362 15 C -0.014 4.014 16 C -0.171 4.171 17 C -0.152 4.152 18 C -0.123 4.123 19 H 0.099 0.901 20 C -0.141 4.141 21 C -0.151 4.151 22 C 0.319 3.681 23 O -0.402 6.402 24 O -0.334 6.334 25 C -0.008 4.008 26 H 0.048 0.952 27 H 0.035 0.965 28 H 0.114 0.886 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.105 0.895 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.098 0.902 37 H 0.092 0.908 38 H 0.125 0.875 39 H 0.126 0.874 40 H 0.267 0.733 41 H 0.119 0.881 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.494 8.755 16.013 18.582 hybrid contribution -0.003 0.300 -0.599 0.670 sum 3.491 9.055 15.414 18.215 Atomic orbital electron populations 1.21784 0.96361 0.98868 1.02259 1.18854 0.94214 0.96609 0.89240 0.93365 1.21089 1.31051 1.12609 0.89110 0.91173 1.24934 0.95128 0.95065 0.99023 1.69853 1.37010 1.23008 1.23632 0.86525 0.79222 0.79811 0.81701 1.20169 1.21349 1.20247 1.22026 0.75829 0.86516 0.84132 1.90515 1.47290 1.19031 1.85543 1.48324 1.61207 1.17796 1.08843 1.21507 0.95753 0.96798 0.87342 1.21976 0.98729 0.95767 1.00663 1.21639 1.00249 0.96483 0.96870 1.21582 0.99474 0.93719 0.97574 0.90122 1.21433 0.96851 0.93106 1.02759 1.21474 1.00638 0.88278 1.04731 1.23711 0.85169 0.86679 0.72547 1.90746 1.17562 1.83484 1.48393 1.84552 1.46782 1.24039 1.77986 1.21738 0.94351 0.82133 1.02624 0.95247 0.96508 0.88571 0.92890 0.92656 0.89515 0.91519 0.91397 0.91939 0.91852 0.90205 0.90792 0.87531 0.87404 0.73338 0.88118 0.92190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.18 8.77 37.16 0.33 -2.85 16 2 C 0.03 0.80 1.77 -92.93 -0.16 0.63 16 3 H 0.05 1.22 6.91 -51.93 -0.36 0.86 16 4 C -0.50 -14.27 8.35 -34.44 -0.29 -14.55 16 5 H 0.07 2.11 6.89 -52.49 -0.36 1.75 16 6 C 0.06 1.64 5.28 -17.81 -0.09 1.55 16 7 N -0.90 -25.07 11.29 55.43 0.63 -24.44 16 8 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 9 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 C 0.52 12.17 6.88 -10.98 -0.08 12.09 16 13 O -0.55 -14.53 15.07 5.56 0.08 -14.45 16 14 N -0.63 -11.23 2.97 -172.50 -0.51 -11.74 16 15 C 0.11 1.63 6.45 -3.48 -0.02 1.61 16 16 C -0.13 -1.53 6.10 -26.39 -0.16 -1.70 16 17 C -0.11 -1.13 4.95 -26.69 -0.13 -1.26 16 18 C -0.10 -1.20 2.34 -90.50 -0.21 -1.41 16 19 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 20 C -0.10 -1.05 3.98 -26.73 -0.11 -1.16 16 21 C -0.11 -0.94 5.57 -27.88 -0.16 -1.09 16 22 C 0.48 4.67 8.33 36.01 0.30 4.97 16 23 O -0.51 -6.85 16.74 -18.76 -0.31 -7.16 16 24 O -0.52 -3.91 13.42 -39.24 -0.53 -4.44 16 25 C 0.12 1.71 4.84 -3.71 -0.02 1.69 16 26 H 0.03 0.69 8.13 -51.93 -0.42 0.27 16 27 H 0.02 0.33 6.52 -51.93 -0.34 -0.01 16 28 H 0.10 2.49 5.92 -51.93 -0.31 2.18 16 29 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.09 1.47 7.03 -51.93 -0.37 1.11 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.49 6.51 -51.93 -0.34 0.16 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.93 8.10 -51.93 -0.42 0.51 16 37 H 0.07 0.76 8.10 -51.92 -0.42 0.34 16 38 H 0.11 0.69 6.54 -51.93 -0.34 0.35 16 39 H 0.11 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.41 1.45 9.10 45.56 0.41 1.87 16 41 H 0.10 1.69 4.76 -51.93 -0.25 1.44 16 42 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 333.79 15.07 5.03 5.03 Total: -1.00 -33.88 333.79 -7.04 -40.92 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -5.60 Total: 0.93 kcal Atomic # 6 Polarization: -0.68 SS G_CDS: -0.80 Total: -1.49 kcal Atomic # 7 Polarization: -36.30 SS G_CDS: 0.11 Total: -36.18 kcal Atomic # 8 Polarization: -25.29 SS G_CDS: -0.76 Total: -26.04 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.88 -7.04 -40.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588987881.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.381 kcal (2) G-P(sol) polarization free energy of solvation -33.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds