Wall clock time and date at job start Tue Mar 31 2020 06:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.47331 * 2 1 4 4 C 1.50692 * 109.47253 * 239.99456 * 2 1 3 5 5 H 1.08001 * 120.00654 * 240.00590 * 4 2 1 6 6 C 1.37888 * 119.99946 * 60.00191 * 4 2 1 7 7 N 1.31516 * 119.99566 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 120.00268 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46938 * 60.00084 * 8 6 4 10 10 H 1.48492 * 109.47453 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47215 * 300.00449 * 8 6 4 12 12 C 1.50700 * 109.46648 * 119.99772 * 2 1 3 13 13 O 1.21283 * 119.99697 * 102.36786 * 12 2 1 14 14 N 1.34780 * 120.00080 * 282.36596 * 12 2 1 15 15 C 1.46928 * 120.63025 * 184.27982 * 14 12 2 16 16 C 1.53626 * 108.54148 * 126.36834 * 15 14 12 17 17 C 1.53036 * 109.24190 * 54.85454 * 16 15 14 18 18 C 1.53037 * 109.53975 * 298.50905 * 17 16 15 19 19 H 1.08998 * 109.52800 * 301.39994 * 18 17 16 20 20 C 1.53000 * 109.49890 * 181.31614 * 18 17 16 21 21 C 1.52997 * 109.46930 * 65.15941 * 20 18 17 22 22 C 1.50705 * 109.47138 * 179.97438 * 21 20 18 23 23 O 1.20832 * 119.99889 * 0.02562 * 22 21 20 24 24 O 1.34224 * 120.00051 * 179.97438 * 22 21 20 25 25 C 1.46924 * 120.62824 * 4.55657 * 14 12 2 26 26 H 1.08994 * 109.47632 * 186.89022 * 1 2 3 27 27 H 1.09003 * 109.46940 * 306.89964 * 1 2 3 28 28 H 1.09005 * 109.47047 * 66.89429 * 1 2 3 29 29 H 0.96996 * 119.99644 * 179.97438 * 7 6 4 30 30 H 1.08992 * 109.58604 * 246.20168 * 15 14 12 31 31 H 1.09005 * 109.58427 * 6.62709 * 15 14 12 32 32 H 1.08999 * 109.63454 * 294.86107 * 16 15 14 33 33 H 1.09006 * 109.45373 * 174.74346 * 16 15 14 34 34 H 1.09000 * 109.46212 * 178.48869 * 17 16 15 35 35 H 1.09000 * 109.44788 * 58.52356 * 17 16 15 36 36 H 1.08993 * 109.47163 * 185.16582 * 20 18 17 37 37 H 1.09008 * 109.47037 * 305.16504 * 20 18 17 38 38 H 1.08993 * 109.47721 * 300.00299 * 21 20 18 39 39 H 1.09004 * 109.47234 * 60.00614 * 21 20 18 40 40 H 0.96709 * 117.00126 * 180.02562 * 24 22 21 41 41 H 1.08997 * 109.59095 * 353.37502 * 25 14 12 42 42 H 1.09004 * 109.58029 * 113.79945 * 25 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.8280 -2.5200 -4.0080 10 1 1.8280 -0.4195 -5.2204 11 1 3.8075 -1.1192 -4.0076 12 6 2.0322 -0.7104 1.2305 13 8 2.4464 -1.8473 1.1478 14 7 2.0212 -0.0823 2.4230 15 6 2.5930 -0.7260 3.6135 16 6 3.6189 0.2302 4.2407 17 6 2.9491 1.5783 4.5161 18 6 2.4655 2.1883 3.1985 19 1 3.3113 2.3124 2.5223 20 6 1.8253 3.5509 3.4711 21 6 2.8888 4.5184 3.9944 22 6 2.2585 5.8608 4.2623 23 8 1.0795 6.0265 4.0563 24 8 3.0066 6.8720 4.7307 25 6 1.4315 1.2566 2.5583 26 1 -0.3634 -1.0202 0.1233 27 1 -0.3633 0.6170 0.8218 28 1 -0.3633 0.4033 -0.9453 29 1 0.7096 1.1617 -3.4844 30 1 1.8002 -0.9375 4.3309 31 1 3.0855 -1.6549 3.3256 32 1 4.4542 0.3722 3.5550 33 1 3.9844 -0.1926 5.1766 34 1 3.6666 2.2511 4.9859 35 1 2.0988 1.4318 5.1822 36 1 1.3996 3.9436 2.5478 37 1 1.0374 3.4397 4.2161 38 1 3.3146 4.1257 4.9177 39 1 3.6768 4.6297 3.2495 40 1 2.5578 7.7142 4.8876 41 1 1.1574 1.6364 1.5741 42 1 0.5459 1.2035 3.1915 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588987881.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:19 Heat of formation + Delta-G solvation = -173.916783 kcal Electronic energy + Delta-G solvation = -23019.145504 eV Core-core repulsion = 19576.218035 eV Total energy + Delta-G solvation = -3442.927469 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.33971 -40.98620 -38.73319 -37.08371 -35.88698 -35.30446 -33.54758 -32.00277 -30.97307 -27.27340 -26.73073 -26.02727 -24.26159 -22.87534 -21.90881 -20.88716 -19.86188 -18.97171 -18.43607 -17.67391 -17.51195 -17.09624 -16.89303 -16.24107 -15.85971 -15.58388 -15.26157 -14.80889 -14.60610 -14.39418 -14.13517 -13.94359 -13.68050 -13.48370 -13.06681 -13.01685 -12.73261 -12.67307 -12.54186 -12.49164 -12.29513 -12.20508 -12.02124 -11.86960 -11.66537 -11.54146 -11.45315 -11.22686 -11.06547 -10.59470 -10.20461 -9.46613 -8.15338 -6.26508 1.29654 1.40336 1.42099 1.50537 1.90785 2.14615 2.31372 2.47202 3.13521 3.69602 3.78996 3.88811 4.07722 4.18558 4.25649 4.29615 4.39562 4.50192 4.59421 4.64662 4.70891 4.78064 4.84391 4.90711 4.93322 4.94227 5.02913 5.07257 5.09620 5.22819 5.26829 5.38906 5.43116 5.55776 5.68840 5.71056 5.78238 5.96118 6.20718 6.60526 6.80727 7.06719 7.38616 7.51119 8.89891 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.016748 B = 0.004378 C = 0.003738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.398029 B = 6393.551917 C = 7488.450072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.030 3.970 3 H 0.041 0.959 4 C -0.531 4.531 5 H 0.044 0.956 6 C 0.022 3.978 7 N -0.909 5.909 8 Si 0.955 3.045 9 H -0.278 1.278 10 H -0.273 1.273 11 H -0.274 1.274 12 C 0.519 3.481 13 O -0.593 6.593 14 N -0.616 5.616 15 C 0.102 3.898 16 C -0.125 4.125 17 C -0.109 4.109 18 C -0.094 4.094 19 H 0.069 0.931 20 C -0.096 4.096 21 C -0.110 4.110 22 C 0.481 3.519 23 O -0.557 6.557 24 O -0.516 6.516 25 C 0.106 3.894 26 H 0.017 0.983 27 H 0.049 0.951 28 H 0.074 0.926 29 H 0.266 0.734 30 H 0.078 0.922 31 H 0.060 0.940 32 H 0.051 0.949 33 H 0.098 0.902 34 H 0.095 0.905 35 H 0.078 0.922 36 H 0.058 0.942 37 H 0.077 0.923 38 H 0.135 0.865 39 H 0.119 0.881 40 H 0.425 0.575 41 H 0.076 0.924 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.183 10.917 18.372 21.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.009 3.991 3 H 0.059 0.941 4 C -0.569 4.569 5 H 0.062 0.938 6 C -0.177 4.177 7 N -0.548 5.548 8 Si 0.780 3.220 9 H -0.204 1.204 10 H -0.198 1.198 11 H -0.199 1.199 12 C 0.310 3.690 13 O -0.473 6.473 14 N -0.349 5.349 15 C -0.021 4.021 16 C -0.163 4.163 17 C -0.147 4.147 18 C -0.114 4.114 19 H 0.087 0.913 20 C -0.134 4.134 21 C -0.148 4.148 22 C 0.326 3.674 23 O -0.448 6.448 24 O -0.329 6.329 25 C -0.016 4.016 26 H 0.036 0.964 27 H 0.068 0.932 28 H 0.092 0.908 29 H 0.075 0.925 30 H 0.096 0.904 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.117 0.883 34 H 0.113 0.887 35 H 0.097 0.903 36 H 0.076 0.924 37 H 0.096 0.904 38 H 0.153 0.847 39 H 0.137 0.863 40 H 0.286 0.714 41 H 0.095 0.905 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.203 10.117 18.076 21.137 hybrid contribution -0.225 -0.030 -1.163 1.185 sum 3.978 10.086 16.913 20.090 Atomic orbital electron populations 1.21596 0.95487 0.98517 1.02321 1.18743 0.94921 0.95873 0.89533 0.94118 1.21243 1.31847 1.12564 0.91283 0.93776 1.25577 0.95131 0.95710 1.01312 1.69932 1.36991 1.23451 1.24414 0.85668 0.78788 0.78673 0.78867 1.20387 1.19766 1.19936 1.21631 0.75941 0.85980 0.85438 1.90482 1.49608 1.20732 1.86506 1.48260 1.59924 1.18605 1.08145 1.21796 0.97242 0.96665 0.86348 1.21947 0.97111 0.96036 1.01250 1.21659 1.01443 0.95715 0.95839 1.21463 0.97925 0.93701 0.98295 0.91291 1.21294 0.97511 0.92610 1.02017 1.21487 0.99900 0.87117 1.06251 1.23944 0.84539 0.87419 0.71500 1.90741 1.19402 1.84254 1.50425 1.84512 1.46510 1.24703 1.77213 1.21973 0.96296 0.81078 1.02258 0.96400 0.93249 0.90779 0.92515 0.90374 0.92160 0.93000 0.88346 0.88690 0.90343 0.92352 0.90414 0.84709 0.86317 0.71353 0.90529 0.90114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.85 8.77 71.98 0.63 -5.22 16 2 C 0.03 1.57 1.77 -12.29 -0.02 1.55 16 3 H 0.04 2.15 6.91 -2.38 -0.02 2.13 16 4 C -0.53 -31.45 8.35 25.60 0.21 -31.24 16 5 H 0.04 2.79 6.89 -2.91 -0.02 2.77 16 6 C 0.02 1.25 5.28 84.66 0.45 1.70 16 7 N -0.91 -51.49 11.29 21.45 0.24 -51.25 16 8 Si 0.95 45.37 29.54 68.60 2.03 47.40 16 9 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 10 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 11 H -0.27 -12.82 7.11 99.48 0.71 -12.12 16 12 C 0.52 24.91 6.88 87.66 0.60 25.52 16 13 O -0.59 -32.88 15.07 -3.04 -0.05 -32.92 16 14 N -0.62 -21.97 2.97 -818.05 -2.43 -24.40 16 15 C 0.10 2.91 6.45 86.51 0.56 3.47 16 16 C -0.13 -2.52 6.10 30.82 0.19 -2.33 16 17 C -0.11 -1.69 4.95 30.62 0.15 -1.54 16 18 C -0.09 -1.97 2.34 -10.72 -0.03 -1.99 16 19 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 20 C -0.10 -1.75 3.98 30.59 0.12 -1.63 16 21 C -0.11 -1.46 5.57 29.85 0.17 -1.30 16 22 C 0.48 8.33 8.33 71.24 0.59 8.92 16 23 O -0.56 -14.17 16.74 21.95 0.37 -13.80 16 24 O -0.52 -6.30 13.42 -51.36 -0.69 -6.99 16 25 C 0.11 3.04 4.84 86.36 0.42 3.46 16 26 H 0.02 0.85 8.13 -2.39 -0.02 0.83 16 27 H 0.05 1.99 6.52 -2.39 -0.02 1.97 16 28 H 0.07 3.91 5.92 -2.38 -0.01 3.90 16 29 H 0.27 14.25 8.31 -92.71 -0.77 13.48 16 30 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.06 2.06 7.03 -2.38 -0.02 2.05 16 32 H 0.05 1.21 8.14 -2.39 -0.02 1.20 16 33 H 0.10 1.45 8.14 -2.38 -0.02 1.43 16 34 H 0.09 0.95 6.51 -2.39 -0.02 0.94 16 35 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.06 1.32 8.10 -2.39 -0.02 1.30 16 37 H 0.08 1.38 8.10 -2.38 -0.02 1.36 16 38 H 0.14 1.06 6.54 -2.39 -0.02 1.04 16 39 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.43 2.00 9.10 -74.05 -0.67 1.33 16 41 H 0.08 2.58 4.76 -2.39 -0.01 2.57 16 42 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 Total: -1.00 -76.51 333.79 3.88 -72.63 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: 0.36 Total: 9.98 kcal Atomic # 6 Polarization: -4.68 SS G_CDS: 4.05 Total: -0.64 kcal Atomic # 7 Polarization: -73.46 SS G_CDS: -2.18 Total: -75.65 kcal Atomic # 8 Polarization: -53.35 SS G_CDS: -0.37 Total: -53.72 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -76.51 3.88 -72.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588987881.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.286 kcal (2) G-P(sol) polarization free energy of solvation -76.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds