Wall clock time and date at job start Tue Mar 31 2020 06:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.47042 * 2 1 4 4 C 1.50698 * 109.47109 * 119.99892 * 2 1 3 5 5 H 1.07997 * 119.99557 * 120.00069 * 4 2 1 6 6 C 1.37874 * 120.00133 * 300.00215 * 4 2 1 7 7 N 1.31515 * 120.00011 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00234 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46897 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47452 * 119.99798 * 8 6 4 11 11 H 1.48499 * 109.46726 * 240.00172 * 8 6 4 12 12 C 1.50701 * 109.47049 * 240.00279 * 2 1 3 13 13 O 1.21282 * 119.99594 * 274.71601 * 12 2 1 14 14 N 1.34770 * 120.00021 * 94.72098 * 12 2 1 15 15 C 1.46937 * 120.60892 * 354.57083 * 14 12 2 16 16 C 1.53195 * 108.77216 * 233.57908 * 15 14 12 17 17 C 1.53038 * 109.33881 * 305.41066 * 16 15 14 18 18 C 1.53043 * 109.53810 * 61.34563 * 17 16 15 19 19 H 1.09005 * 109.49197 * 58.58964 * 18 17 16 20 20 C 1.53006 * 109.49932 * 178.64836 * 18 17 16 21 21 C 1.52996 * 109.47038 * 295.00903 * 20 18 17 22 22 C 1.50701 * 109.46912 * 179.97438 * 21 20 18 23 23 O 1.20823 * 120.00237 * 359.97438 * 22 21 20 24 24 O 1.34234 * 120.00242 * 179.97438 * 22 21 20 25 25 C 1.46930 * 120.62857 * 174.59080 * 14 12 2 26 26 H 1.08993 * 109.47171 * 305.07174 * 1 2 3 27 27 H 1.09008 * 109.46995 * 65.07268 * 1 2 3 28 28 H 1.09002 * 109.46754 * 185.06825 * 1 2 3 29 29 H 0.96999 * 120.00045 * 179.97438 * 7 6 4 30 30 H 1.09001 * 109.55997 * 113.80797 * 15 14 12 31 31 H 1.09001 * 109.61055 * 353.37800 * 15 14 12 32 32 H 1.08992 * 109.49306 * 185.44448 * 16 15 14 33 33 H 1.09000 * 109.49604 * 65.38111 * 16 15 14 34 34 H 1.09000 * 109.46239 * 181.36808 * 17 16 15 35 35 H 1.09003 * 109.46159 * 301.34705 * 17 16 15 36 36 H 1.08999 * 109.46750 * 55.00534 * 20 18 17 37 37 H 1.08993 * 109.46896 * 175.00126 * 20 18 17 38 38 H 1.08999 * 109.47049 * 299.99448 * 21 20 18 39 39 H 1.08993 * 109.47466 * 59.99550 * 21 20 18 40 40 H 0.96698 * 117.00119 * 180.02562 * 24 22 21 41 41 H 1.08993 * 109.59127 * 6.60321 * 25 14 12 42 42 H 1.09000 * 109.70424 * 246.24670 * 25 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6532 -1.5884 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.1474 -2.2863 3.6038 10 1 3.1472 -0.1857 4.8161 11 1 1.1677 -1.5866 4.8164 12 6 2.0324 -0.7104 -1.2305 13 8 2.1530 -1.9171 -1.2272 14 7 2.3475 -0.0046 -2.3345 15 6 2.0955 1.4417 -2.3952 16 6 1.2682 1.7458 -3.6482 17 6 1.9830 1.1797 -4.8772 18 6 2.1116 -0.3392 -4.7401 19 1 1.1202 -0.7803 -4.6366 20 6 2.7962 -0.9082 -5.9846 21 6 1.9010 -0.6865 -7.2054 22 6 2.5756 -1.2464 -8.4311 23 8 3.6612 -1.7687 -8.3380 24 8 1.9705 -1.1649 -9.6266 25 6 2.9491 -0.6669 -3.5000 26 1 -0.3633 0.5905 0.8410 27 1 -0.3633 0.4332 -0.9320 28 1 -0.3633 -1.0237 0.0908 29 1 0.7089 1.1614 3.4844 30 1 3.0444 1.9757 -2.4454 31 1 1.5442 1.7545 -1.5085 32 1 1.1562 2.8245 -3.7572 33 1 0.2845 1.2855 -3.5552 34 1 1.4082 1.4161 -5.7727 35 1 2.9760 1.6222 -4.9558 36 1 3.7502 -0.4036 -6.1371 37 1 2.9676 -1.9759 -5.8487 38 1 0.9470 -1.1911 -7.0528 39 1 1.7296 0.3813 -7.3412 40 1 2.4421 -1.5384 -10.3837 41 1 2.9611 -1.7453 -3.3417 42 1 3.9682 -0.3071 -3.6418 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588987883.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:25 Heat of formation + Delta-G solvation = -151.962342 kcal Electronic energy + Delta-G solvation = -22781.833643 eV Core-core repulsion = 19339.858190 eV Total energy + Delta-G solvation = -3441.975453 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.56722 -39.61229 -37.38832 -36.42432 -34.44244 -33.72626 -31.73754 -30.85003 -29.76072 -25.48380 -25.23185 -25.12725 -22.35859 -22.06844 -21.00890 -20.00611 -18.36181 -18.14365 -16.86833 -16.48272 -16.44529 -15.96878 -15.18258 -14.77039 -14.48502 -14.28816 -14.19006 -13.67679 -13.43571 -13.05856 -12.93065 -12.63898 -12.44212 -12.14657 -11.90146 -11.82645 -11.41851 -11.35199 -11.04307 -10.94668 -10.84680 -10.77531 -10.68325 -10.59989 -10.52343 -10.27499 -10.20672 -10.03394 -8.96599 -8.57031 -8.28158 -8.01281 -6.04626 -4.07429 1.93193 2.75132 3.31572 3.39124 3.46508 3.69089 3.73139 4.45785 4.47884 4.62994 4.74126 4.91726 4.96209 5.10236 5.22295 5.28852 5.38982 5.49279 5.50902 5.58072 5.67403 5.79130 5.89215 5.96719 5.99719 6.06450 6.14824 6.18240 6.24068 6.37633 6.45415 6.68504 6.86680 7.01116 7.14650 7.47239 7.59869 7.76563 7.97777 8.11494 8.39168 8.97054 9.24462 9.57216 11.03096 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.036377 B = 0.003321 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.542077 B = 8428.288694 C = 8849.841190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.031 3.969 3 H 0.047 0.953 4 C -0.499 4.499 5 H 0.066 0.934 6 C 0.060 3.940 7 N -0.895 5.895 8 Si 0.899 3.101 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.283 1.283 12 C 0.525 3.475 13 O -0.550 6.550 14 N -0.626 5.626 15 C 0.107 3.893 16 C -0.135 4.135 17 C -0.116 4.116 18 C -0.101 4.101 19 H 0.077 0.923 20 C -0.103 4.103 21 C -0.114 4.114 22 C 0.477 3.523 23 O -0.515 6.515 24 O -0.521 6.521 25 C 0.116 3.884 26 H 0.090 0.910 27 H 0.010 0.990 28 H 0.035 0.965 29 H 0.260 0.740 30 H 0.059 0.941 31 H 0.099 0.901 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.107 0.893 39 H 0.108 0.892 40 H 0.408 0.592 41 H 0.088 0.912 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.062 3.614 -20.453 20.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.010 3.990 3 H 0.065 0.935 4 C -0.537 4.537 5 H 0.085 0.915 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.210 1.210 12 C 0.317 3.683 13 O -0.426 6.426 14 N -0.362 5.362 15 C -0.016 4.016 16 C -0.173 4.173 17 C -0.153 4.153 18 C -0.121 4.121 19 H 0.095 0.905 20 C -0.141 4.141 21 C -0.151 4.151 22 C 0.319 3.681 23 O -0.403 6.403 24 O -0.333 6.333 25 C -0.007 4.007 26 H 0.109 0.891 27 H 0.029 0.971 28 H 0.055 0.945 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.117 0.883 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.125 0.875 39 H 0.126 0.874 40 H 0.267 0.733 41 H 0.106 0.894 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.021 3.077 -19.904 20.141 hybrid contribution 0.597 -0.564 0.193 0.844 sum 0.618 2.513 -19.711 19.880 Atomic orbital electron populations 1.21678 0.96180 1.00915 0.99718 1.18916 0.94287 0.96587 0.89216 0.93496 1.21068 1.31188 1.12331 0.89160 0.91541 1.24923 0.95070 0.95039 0.99040 1.69883 1.37026 1.23013 1.23468 0.86411 0.78673 0.79757 0.82510 1.19609 1.21026 1.20953 1.22028 0.74606 0.87751 0.83921 1.90520 1.53607 1.15227 1.83277 1.48325 1.64197 1.08508 1.15140 1.21723 0.99497 0.81247 0.99149 1.21928 0.99703 1.00792 0.94878 1.21648 1.00881 0.94874 0.97904 1.21548 1.00330 0.96116 0.94065 0.90491 1.21429 0.98345 1.02757 0.91535 1.21477 1.00862 1.03518 0.89276 1.23714 0.83867 0.75836 0.84654 1.90740 1.21732 1.41470 1.86372 1.84554 1.53411 1.76427 1.18909 1.21398 0.95217 0.99635 0.84463 0.89127 0.97108 0.94545 0.92973 0.92281 0.88330 0.90992 0.91468 0.91953 0.91770 0.90750 0.90624 0.87499 0.87371 0.73304 0.89353 0.92393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.01 8.77 37.16 0.33 -2.68 16 2 C 0.03 0.77 1.83 -92.92 -0.17 0.60 16 3 H 0.05 1.17 6.19 -51.93 -0.32 0.85 16 4 C -0.50 -14.20 8.32 -34.44 -0.29 -14.49 16 5 H 0.07 2.00 7.25 -52.49 -0.38 1.62 16 6 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 7 N -0.89 -24.93 11.38 55.43 0.63 -24.30 16 8 Si 0.90 21.77 29.54 -169.99 -5.02 16.74 16 9 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 C 0.53 12.22 6.68 -10.99 -0.07 12.15 16 13 O -0.55 -14.59 15.52 5.56 0.09 -14.50 16 14 N -0.63 -11.30 2.97 -172.76 -0.51 -11.81 16 15 C 0.11 1.58 6.15 -3.70 -0.02 1.56 16 16 C -0.13 -1.53 6.08 -26.61 -0.16 -1.69 16 17 C -0.12 -1.12 4.95 -26.69 -0.13 -1.25 16 18 C -0.10 -1.14 2.34 -90.50 -0.21 -1.35 16 19 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 20 C -0.10 -1.00 3.98 -26.73 -0.11 -1.11 16 21 C -0.11 -0.87 5.57 -27.88 -0.16 -1.03 16 22 C 0.48 4.38 8.33 36.01 0.30 4.68 16 23 O -0.52 -6.53 16.74 -18.75 -0.31 -6.84 16 24 O -0.52 -3.59 13.42 -39.27 -0.53 -4.12 16 25 C 0.12 1.76 5.73 -3.71 -0.02 1.74 16 26 H 0.09 2.30 6.22 -51.93 -0.32 1.98 16 27 H 0.01 0.21 8.11 -51.92 -0.42 -0.22 16 28 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.10 1.62 5.51 -51.93 -0.29 1.34 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.06 0.48 6.50 -51.93 -0.34 0.14 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 37 H 0.08 0.83 8.10 -51.93 -0.42 0.41 16 38 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.11 0.66 6.54 -51.93 -0.34 0.32 16 40 H 0.41 1.21 9.10 45.56 0.41 1.62 16 41 H 0.09 1.53 7.00 -51.93 -0.36 1.16 16 42 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 336.99 15.07 5.08 5.08 Total: -1.00 -33.94 336.99 -7.11 -41.05 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -5.72 Total: 0.00 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: -0.81 Total: -1.30 kcal Atomic # 7 Polarization: -36.23 SS G_CDS: 0.12 Total: -36.11 kcal Atomic # 8 Polarization: -24.70 SS G_CDS: -0.75 Total: -25.46 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.94 -7.11 -41.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588987883.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.913 kcal (2) G-P(sol) polarization free energy of solvation -33.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds