Wall clock time and date at job start Tue Mar 31 2020 06:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.46890 * 2 1 4 4 C 1.50701 * 109.46877 * 119.99142 * 2 1 3 5 5 H 1.08002 * 119.99551 * 120.00608 * 4 2 1 6 6 C 1.37876 * 120.00381 * 300.00024 * 4 2 1 7 7 N 1.31513 * 119.99979 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99911 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.46701 * 90.00833 * 8 6 4 10 10 H 1.48503 * 109.46895 * 210.00098 * 8 6 4 11 11 H 1.48500 * 109.47483 * 330.00611 * 8 6 4 12 12 C 1.50696 * 109.47457 * 239.99331 * 2 1 3 13 13 O 1.21276 * 120.00189 * 239.99743 * 12 2 1 14 14 N 1.34777 * 119.99768 * 60.00169 * 12 2 1 15 15 C 1.46500 * 119.99835 * 174.51752 * 14 12 2 16 16 C 1.52993 * 109.47307 * 303.30746 * 15 14 12 17 17 C 1.50693 * 109.47685 * 305.92091 * 16 15 14 18 18 O 1.20830 * 119.99371 * 356.20663 * 17 16 15 19 19 O 1.34224 * 120.00595 * 176.20945 * 17 16 15 20 20 C 1.53008 * 109.46716 * 183.30856 * 15 14 12 21 21 C 1.52993 * 109.47142 * 299.99991 * 20 15 14 22 22 C 1.53003 * 109.47332 * 299.99983 * 21 20 15 23 23 C 1.52998 * 109.46859 * 60.00472 * 22 21 20 24 24 C 1.52999 * 109.46905 * 63.31189 * 15 14 12 25 25 H 1.08997 * 109.47636 * 300.00370 * 1 2 3 26 26 H 1.08995 * 109.47150 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47441 * 60.00443 * 1 2 3 28 28 H 0.96999 * 119.99846 * 179.97438 * 7 6 4 29 29 H 0.97001 * 119.99876 * 354.51896 * 14 12 2 30 30 H 1.09003 * 109.46700 * 65.91957 * 16 15 14 31 31 H 1.09004 * 109.47131 * 185.91713 * 16 15 14 32 32 H 0.96701 * 117.00220 * 179.97438 * 19 17 16 33 33 H 1.08996 * 109.47241 * 60.00520 * 20 15 14 34 34 H 1.09000 * 109.46504 * 180.02562 * 20 15 14 35 35 H 1.09004 * 109.47050 * 180.02562 * 21 20 15 36 36 H 1.09000 * 109.47174 * 60.00713 * 21 20 15 37 37 H 1.08991 * 109.47094 * 300.00159 * 22 21 20 38 38 H 1.09006 * 109.46788 * 179.97438 * 22 21 20 39 39 H 1.09000 * 109.46870 * 180.02562 * 23 22 21 40 40 H 1.09001 * 109.47492 * 59.99890 * 23 22 21 41 41 H 1.09001 * 109.46823 * 179.97438 * 24 15 14 42 42 H 1.08991 * 109.47259 * 299.99851 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0322 -0.7102 1.2306 5 1 2.6532 -1.5883 1.1316 6 6 1.6991 -0.2391 2.4828 7 7 0.9427 0.8299 2.6034 8 14 2.3212 -1.1200 4.0081 9 1 3.6295 -0.5453 4.4125 10 1 1.3429 -0.9487 5.1121 11 1 2.4858 -2.5659 3.7123 12 6 2.0323 -0.7105 -1.2303 13 8 2.7296 -1.6965 -1.1189 14 7 1.7068 -0.2501 -2.4545 15 6 2.2911 -0.8666 -3.6481 16 6 3.8172 -0.8078 -3.5574 17 6 4.2520 0.6155 -3.3207 18 8 3.4317 1.5025 -3.3019 19 8 5.5504 0.8980 -3.1308 20 6 1.8247 -0.1095 -4.8933 21 6 0.2986 -0.1683 -4.9840 22 6 -0.1510 -1.6279 -5.0764 23 6 0.3153 -2.3848 -3.8312 24 6 1.8415 -2.3261 -3.7404 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5138 -0.8900 28 1 0.7080 1.1612 3.4843 29 1 1.0856 0.4893 -2.5451 30 1 4.1564 -1.4334 -2.7317 31 1 4.2509 -1.1699 -4.4896 32 1 5.7809 1.8255 -2.9832 33 1 2.1450 0.9302 -4.8276 34 1 2.2591 -0.5685 -5.7814 35 1 -0.0337 0.3707 -5.8713 36 1 -0.1362 0.2904 -4.0959 37 1 0.2837 -2.0864 -5.9644 38 1 -1.2384 -1.6697 -5.1406 39 1 -0.0046 -3.4247 -3.8972 40 1 -0.1195 -1.9262 -2.9431 41 1 2.2759 -2.7846 -4.6288 42 1 2.1736 -2.8654 -2.8534 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588988121.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:30 Heat of formation + Delta-G solvation = -149.963332 kcal Electronic energy + Delta-G solvation = -24400.239677 eV Core-core repulsion = 20958.350907 eV Total energy + Delta-G solvation = -3441.888770 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.78710 -39.20351 -37.39663 -35.87111 -33.75186 -33.38878 -31.47965 -30.65177 -29.79098 -27.50143 -25.08607 -22.99397 -22.67516 -22.24512 -20.52683 -19.73892 -18.49831 -17.81828 -16.52791 -16.26664 -16.05085 -15.58562 -15.13514 -14.66218 -14.45732 -14.33200 -13.87626 -13.32515 -13.11841 -12.95769 -12.58557 -12.24943 -12.16073 -12.02402 -12.00796 -11.61581 -11.37045 -11.23099 -10.99800 -10.96266 -10.67865 -10.64047 -10.49793 -10.45423 -10.21285 -10.00292 -9.91066 -9.80915 -8.91626 -8.47108 -8.28339 -8.20786 -5.98400 -4.01435 2.47369 3.25204 3.35535 3.41187 3.47895 3.77500 3.98397 4.50545 4.70533 4.77174 4.91891 5.18117 5.25901 5.32807 5.34956 5.46039 5.52809 5.62386 5.69863 5.77852 5.82401 5.97617 6.03015 6.14146 6.22681 6.27962 6.33198 6.43500 6.56107 6.60561 6.69169 6.75413 6.89610 7.00798 7.25844 7.56078 7.82186 8.05453 8.12608 8.24361 8.56147 9.07470 9.33667 9.63938 11.09176 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.017793 B = 0.006090 C = 0.005265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.271381 B = 4596.344760 C = 5316.495037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.029 3.971 3 H 0.049 0.951 4 C -0.498 4.498 5 H 0.074 0.926 6 C 0.057 3.943 7 N -0.897 5.897 8 Si 0.898 3.102 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.273 1.273 12 C 0.522 3.478 13 O -0.549 6.549 14 N -0.724 5.724 15 C 0.196 3.804 16 C -0.130 4.130 17 C 0.483 3.517 18 O -0.505 6.505 19 O -0.522 6.522 20 C -0.129 4.129 21 C -0.117 4.117 22 C -0.118 4.118 23 C -0.115 4.115 24 C -0.128 4.128 25 H 0.091 0.909 26 H 0.030 0.970 27 H 0.011 0.989 28 H 0.260 0.740 29 H 0.399 0.601 30 H 0.127 0.873 31 H 0.103 0.897 32 H 0.406 0.594 33 H 0.085 0.915 34 H 0.067 0.933 35 H 0.060 0.940 36 H 0.065 0.935 37 H 0.057 0.943 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.068 0.932 41 H 0.061 0.939 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.412 -1.158 -16.661 16.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.008 3.992 3 H 0.067 0.933 4 C -0.537 4.537 5 H 0.092 0.908 6 C -0.143 4.143 7 N -0.536 5.536 8 Si 0.726 3.274 9 H -0.208 1.208 10 H -0.214 1.214 11 H -0.198 1.198 12 C 0.312 3.688 13 O -0.427 6.427 14 N -0.378 5.378 15 C 0.109 3.891 16 C -0.169 4.169 17 C 0.325 3.675 18 O -0.392 6.392 19 O -0.334 6.334 20 C -0.167 4.167 21 C -0.154 4.154 22 C -0.155 4.155 23 C -0.153 4.153 24 C -0.166 4.166 25 H 0.110 0.890 26 H 0.049 0.951 27 H 0.030 0.970 28 H 0.069 0.931 29 H 0.234 0.766 30 H 0.145 0.855 31 H 0.121 0.879 32 H 0.264 0.736 33 H 0.104 0.896 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.087 0.913 41 H 0.080 0.920 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.512 -1.923 -16.487 16.668 hybrid contribution 0.208 0.648 0.917 1.142 sum 1.720 -1.274 -15.570 15.717 Atomic orbital electron populations 1.21719 0.96720 0.99630 1.00822 1.18844 0.94092 0.96742 0.89564 0.93286 1.21151 1.30778 1.12694 0.89038 0.90802 1.24955 0.95198 0.95094 0.99078 1.69882 1.37165 1.23190 1.23400 0.86483 0.78410 0.80245 0.82239 1.20766 1.21353 1.19781 1.21866 0.78531 0.83801 0.84561 1.90438 1.38960 1.26438 1.86828 1.46302 1.49117 1.37718 1.04662 1.19900 0.89096 0.93574 0.86554 1.21931 0.97713 0.91121 1.06085 1.23422 0.79497 0.92549 0.72011 1.90651 1.52949 1.49101 1.46522 1.84541 1.28930 1.36033 1.83856 1.21985 0.96464 1.02084 0.96151 1.21493 0.95404 0.96738 1.01808 1.21551 1.00167 0.95619 0.98188 1.21448 0.95644 0.99785 0.98375 1.21929 0.96188 0.95391 1.03124 0.89005 0.95066 0.97039 0.93057 0.76580 0.85486 0.87859 0.73627 0.89633 0.91407 0.92142 0.91621 0.92406 0.92359 0.92355 0.91287 0.92008 0.89152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.07 8.86 37.15 0.33 -2.74 16 2 C 0.03 0.72 2.65 -92.93 -0.25 0.48 16 3 H 0.05 1.34 8.14 -51.93 -0.42 0.91 16 4 C -0.50 -14.21 8.37 -34.44 -0.29 -14.50 16 5 H 0.07 2.21 6.75 -52.49 -0.35 1.85 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 7 N -0.90 -25.64 11.32 55.43 0.63 -25.02 16 8 Si 0.90 22.06 29.54 -169.99 -5.02 17.04 16 9 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.27 -6.72 7.11 56.52 0.40 -6.31 16 12 C 0.52 11.58 6.49 -10.99 -0.07 11.51 16 13 O -0.55 -13.24 11.77 5.56 0.07 -13.17 16 14 N -0.72 -12.67 2.49 -47.61 -0.12 -12.79 16 15 C 0.20 2.81 0.26 -131.82 -0.03 2.78 16 16 C -0.13 -1.86 4.50 -27.89 -0.13 -1.98 16 17 C 0.48 7.36 7.81 36.00 0.28 7.64 16 18 O -0.50 -8.59 13.77 -18.75 -0.26 -8.85 16 19 O -0.52 -6.85 13.42 -39.24 -0.53 -7.38 16 20 C -0.13 -1.54 4.54 -26.73 -0.12 -1.66 16 21 C -0.12 -1.30 5.75 -26.73 -0.15 -1.46 16 22 C -0.12 -1.27 5.92 -26.73 -0.16 -1.43 16 23 C -0.11 -1.51 5.77 -26.73 -0.15 -1.66 16 24 C -0.13 -1.78 4.57 -26.73 -0.12 -1.90 16 25 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 26 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.01 0.22 7.45 -51.93 -0.39 -0.17 16 28 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 29 H 0.40 6.79 6.49 -40.82 -0.26 6.53 16 30 H 0.13 2.14 6.32 -51.93 -0.33 1.81 16 31 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.41 3.65 9.10 45.56 0.41 4.07 16 33 H 0.09 1.13 5.91 -51.93 -0.31 0.83 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.81 6.80 -51.93 -0.35 0.45 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.07 1.06 7.60 -51.93 -0.39 0.67 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.09 1.54 6.23 -51.93 -0.32 1.22 16 LS Contribution 324.73 15.07 4.89 4.89 Total: -1.00 -31.84 324.73 -6.85 -38.69 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -5.55 Total: 10.00 kcal Atomic # 6 Polarization: -2.46 SS G_CDS: -0.96 Total: -3.41 kcal Atomic # 7 Polarization: -38.31 SS G_CDS: 0.51 Total: -37.80 kcal Atomic # 8 Polarization: -28.68 SS G_CDS: -0.72 Total: -29.40 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.84 -6.85 -38.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588988121.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.272 kcal (2) G-P(sol) polarization free energy of solvation -31.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds