Wall clock time and date at job start Tue Mar 31 2020 06:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08996 * 109.46830 * 2 1 4 4 C 1.50703 * 109.46582 * 119.99901 * 2 1 3 5 5 H 1.08003 * 119.99313 * 119.99889 * 4 2 1 6 6 C 1.37869 * 120.00389 * 300.00136 * 4 2 1 7 7 N 1.31519 * 119.99881 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00233 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.47204 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47627 * 119.99769 * 8 6 4 11 11 H 1.48510 * 109.47200 * 239.99937 * 8 6 4 12 12 N 1.46497 * 109.47039 * 239.99826 * 2 1 3 13 13 C 1.34781 * 119.99679 * 85.00446 * 12 2 1 14 14 O 1.21275 * 120.00318 * 359.97438 * 13 12 2 15 15 C 1.50700 * 119.99683 * 179.97438 * 13 12 2 16 16 C 1.50698 * 108.87303 * 298.59998 * 15 13 12 17 17 O 1.20825 * 120.00011 * 241.39674 * 16 15 13 18 18 O 1.34237 * 119.99847 * 61.39944 * 16 15 13 19 19 C 1.45542 * 108.89394 * 179.97438 * 15 13 12 20 20 C 1.54245 * 112.32700 * 301.22752 * 19 15 13 21 21 C 1.50546 * 108.48390 * 279.88442 * 20 19 15 22 22 C 1.54069 * 112.41623 * 94.26691 * 21 20 19 23 23 C 1.54056 * 112.81521 * 318.27597 * 22 21 20 24 24 C 1.50476 * 112.50048 * 318.28454 * 23 22 21 25 25 H 1.08993 * 109.47094 * 299.99969 * 1 2 3 26 26 H 1.09005 * 109.46410 * 59.99827 * 1 2 3 27 27 H 1.08992 * 109.47203 * 179.97438 * 1 2 3 28 28 H 0.96998 * 119.99709 * 180.02562 * 7 6 4 29 29 H 0.96996 * 120.00575 * 265.00325 * 12 2 1 30 30 H 0.96700 * 116.99834 * 179.97438 * 18 16 15 31 31 H 1.09002 * 108.89596 * 61.93414 * 19 15 13 32 32 H 1.09003 * 108.89788 * 180.52448 * 19 15 13 33 33 H 1.09000 * 109.62486 * 39.68278 * 20 19 15 34 34 H 1.08999 * 109.63051 * 160.25691 * 20 19 15 35 35 H 1.09000 * 108.92627 * 333.51136 * 21 20 19 36 36 H 1.09006 * 108.83640 * 214.96125 * 21 20 19 37 37 H 1.09000 * 108.81197 * 197.41864 * 22 21 20 38 38 H 1.08999 * 108.81384 * 79.13971 * 22 21 20 39 39 H 1.09003 * 108.87949 * 197.50496 * 23 22 21 40 40 H 1.09005 * 108.87812 * 79.06574 * 23 22 21 41 41 H 1.09002 * 109.62685 * 334.44737 * 24 23 22 42 42 H 1.08994 * 109.79059 * 213.95829 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3223 -1.1196 4.0079 9 1 3.1472 -2.2865 3.6038 10 1 3.1471 -0.1860 4.8162 11 1 1.1675 -1.5867 4.8165 12 7 2.0184 -0.6906 -1.1961 13 6 2.1472 -0.0182 -2.3571 14 8 1.8584 1.1584 -2.4117 15 6 2.6500 -0.7285 -3.5874 16 6 4.0446 -1.2345 -3.3224 17 8 4.9684 -0.8389 -3.9932 18 8 4.2604 -2.1247 -2.3411 19 6 2.6934 0.2171 -4.6929 20 6 1.3118 0.8353 -4.9897 21 6 0.5133 -0.1485 -5.8028 22 6 -0.3920 -1.0361 -4.9275 23 6 0.3057 -1.5154 -3.6403 24 6 1.7316 -1.9328 -3.8794 25 1 -0.3633 0.5138 0.8899 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 0.7095 1.1617 3.4844 29 1 2.2491 -1.6318 -1.1527 30 1 5.1716 -2.4203 -2.2091 31 1 3.3922 1.0165 -4.4465 32 1 3.0482 -0.2989 -5.5851 33 1 0.7949 1.0434 -4.0529 34 1 1.4376 1.7590 -5.5546 35 1 1.1997 -0.7860 -6.3600 36 1 -0.1086 0.4015 -6.5091 37 1 -0.6967 -1.9073 -5.5074 38 1 -1.2822 -0.4693 -4.6547 39 1 -0.2465 -2.3631 -3.2345 40 1 0.2928 -0.7064 -2.9099 41 1 1.8532 -2.2428 -4.9173 42 1 1.9900 -2.7594 -3.2177 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588988145.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:50 Heat of formation + Delta-G solvation = -143.136449 kcal Electronic energy + Delta-G solvation = -24514.889511 eV Core-core repulsion = 21073.296777 eV Total energy + Delta-G solvation = -3441.592734 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.51675 -39.25754 -37.18359 -36.12079 -34.88586 -33.05973 -32.44549 -31.71318 -28.82519 -25.94258 -25.28671 -24.78704 -22.76690 -22.29799 -20.20355 -19.37308 -18.94626 -18.11562 -17.28547 -16.87248 -16.00175 -15.36519 -15.32915 -14.90317 -14.55899 -14.09765 -13.94516 -13.72379 -13.20807 -12.98078 -12.89455 -12.48288 -12.38195 -12.09840 -11.60523 -11.53879 -11.29201 -11.23265 -11.08587 -10.96456 -10.82615 -10.69925 -10.48174 -10.32999 -10.24743 -10.22996 -10.19333 -10.11975 -9.07595 -8.95485 -8.55840 -7.93024 -6.14053 -4.22854 2.12633 2.79444 3.22541 3.30610 3.33119 3.46217 3.90531 4.33909 4.57733 4.68604 4.89491 5.07059 5.14418 5.18554 5.26442 5.31152 5.43214 5.43610 5.58225 5.82867 5.86099 5.93232 6.02592 6.19415 6.22273 6.28229 6.33231 6.39051 6.47282 6.52621 6.76380 6.80081 6.93849 7.11159 7.39895 7.52779 7.67638 7.88743 7.89537 8.12440 8.60171 8.74304 9.03471 9.44440 10.92004 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.020754 B = 0.005805 C = 0.005125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.789998 B = 4821.901199 C = 5462.091636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.263 3.737 3 H 0.048 0.952 4 C -0.531 4.531 5 H 0.063 0.937 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.901 3.099 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.696 5.696 13 C 0.515 3.485 14 O -0.536 6.536 15 C -0.062 4.062 16 C 0.491 3.509 17 O -0.511 6.511 18 O -0.506 6.506 19 C -0.094 4.094 20 C -0.122 4.122 21 C -0.120 4.120 22 C -0.114 4.114 23 C -0.132 4.132 24 C -0.099 4.099 25 H 0.090 0.910 26 H 0.015 0.985 27 H 0.027 0.973 28 H 0.264 0.736 29 H 0.395 0.605 30 H 0.412 0.588 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.098 0.902 34 H 0.064 0.936 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.056 0.944 38 H 0.060 0.940 39 H 0.068 0.932 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.397 -7.006 -13.326 15.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.162 3.838 3 H 0.066 0.934 4 C -0.570 4.570 5 H 0.081 0.919 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.344 5.344 13 C 0.298 3.702 14 O -0.415 6.415 15 C -0.067 4.067 16 C 0.332 3.668 17 O -0.399 6.399 18 O -0.317 6.317 19 C -0.131 4.131 20 C -0.160 4.160 21 C -0.158 4.158 22 C -0.152 4.152 23 C -0.170 4.170 24 C -0.137 4.137 25 H 0.109 0.891 26 H 0.034 0.966 27 H 0.046 0.954 28 H 0.074 0.926 29 H 0.229 0.771 30 H 0.271 0.729 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.116 0.884 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.098 0.902 41 H 0.098 0.902 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.048 -5.805 -13.408 14.610 hybrid contribution 1.142 -1.123 0.994 1.885 sum 1.093 -6.927 -12.414 14.258 Atomic orbital electron populations 1.22077 0.98289 0.99182 1.00927 1.18793 0.91098 0.93950 0.79967 0.93404 1.21248 1.32304 1.13209 0.90191 0.91904 1.24882 0.94832 0.94956 0.99056 1.69911 1.36001 1.22459 1.23773 0.86401 0.78611 0.79531 0.82589 1.19719 1.20930 1.20888 1.46619 1.63781 1.14021 1.09939 1.19606 0.79354 0.87211 0.83990 1.90653 1.51353 1.15423 1.84045 1.19931 0.89981 0.98397 0.98368 1.23181 0.91528 0.75560 0.76520 1.90693 1.45051 1.56106 1.48021 1.84516 1.38010 1.56968 1.52241 1.20220 0.99468 0.97796 0.95651 1.21526 0.94626 0.97387 1.02418 1.21442 0.98565 0.97717 0.98062 1.21901 0.98532 0.98946 0.95827 1.21507 0.94467 1.02370 0.98631 1.21417 0.94492 0.94690 1.03129 0.89117 0.96630 0.95352 0.92642 0.77099 0.72930 0.90666 0.91257 0.88399 0.91773 0.92485 0.92462 0.92551 0.92106 0.91284 0.90152 0.90236 0.89924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.49 9.26 37.16 0.34 -3.14 16 2 C 0.26 6.50 2.56 -69.08 -0.18 6.32 16 3 H 0.05 1.38 7.58 -51.93 -0.39 0.98 16 4 C -0.53 -13.78 8.73 -34.44 -0.30 -14.08 16 5 H 0.06 1.57 7.74 -52.48 -0.41 1.17 16 6 C 0.07 1.74 5.30 -17.82 -0.09 1.65 16 7 N -0.88 -24.53 11.32 55.43 0.63 -23.90 16 8 Si 0.90 20.38 29.54 -169.99 -5.02 15.36 16 9 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 11 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 12 N -0.70 -14.01 4.41 -54.93 -0.24 -14.25 16 13 C 0.52 9.93 3.64 -10.98 -0.04 9.89 16 14 O -0.54 -12.07 13.32 5.56 0.07 -12.00 16 15 C -0.06 -0.95 0.49 -159.68 -0.08 -1.02 16 16 C 0.49 7.45 6.83 36.00 0.25 7.70 16 17 O -0.51 -8.77 16.54 -18.75 -0.31 -9.08 16 18 O -0.51 -6.35 11.42 -39.28 -0.45 -6.80 16 19 C -0.09 -1.39 2.97 -29.60 -0.09 -1.48 16 20 C -0.12 -1.73 5.20 -27.31 -0.14 -1.87 16 21 C -0.12 -1.37 5.32 -27.40 -0.15 -1.52 16 22 C -0.11 -1.31 5.85 -25.62 -0.15 -1.46 16 23 C -0.13 -1.73 5.11 -27.44 -0.14 -1.87 16 24 C -0.10 -1.23 4.41 -27.34 -0.12 -1.35 16 25 H 0.09 2.38 6.07 -51.93 -0.32 2.07 16 26 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 29 H 0.39 7.19 6.99 -40.82 -0.29 6.91 16 30 H 0.41 3.34 9.10 45.56 0.41 3.75 16 31 H 0.07 1.27 7.79 -51.93 -0.40 0.87 16 32 H 0.07 0.92 7.39 -51.93 -0.38 0.54 16 33 H 0.10 1.67 4.53 -51.93 -0.24 1.44 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.06 0.59 6.63 -51.93 -0.34 0.25 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.08 1.32 4.75 -51.93 -0.25 1.08 16 41 H 0.08 0.84 6.98 -51.93 -0.36 0.48 16 42 H 0.08 0.95 7.43 -51.93 -0.39 0.56 16 LS Contribution 321.82 15.07 4.85 4.85 Total: -1.00 -30.67 321.82 -6.80 -37.47 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: -5.44 Total: 10.57 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: -0.89 Total: -2.23 kcal Atomic # 7 Polarization: -38.54 SS G_CDS: 0.39 Total: -38.15 kcal Atomic # 8 Polarization: -27.19 SS G_CDS: -0.68 Total: -27.87 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.67 -6.80 -37.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588988145.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.663 kcal (2) G-P(sol) polarization free energy of solvation -30.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds