Wall clock time and date at job start Tue Mar 31 2020 06:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08995 * 109.46732 * 2 1 4 4 C 1.50698 * 109.46832 * 240.00074 * 2 1 3 5 5 H 1.08003 * 119.99824 * 239.99222 * 4 2 1 6 6 C 1.37876 * 120.00136 * 60.00526 * 4 2 1 7 7 N 1.31515 * 119.99758 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00084 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47486 * 89.99738 * 8 6 4 10 10 H 1.48498 * 109.47232 * 209.99992 * 8 6 4 11 11 H 1.48506 * 109.46854 * 329.99496 * 8 6 4 12 12 N 1.46500 * 109.46865 * 120.00130 * 2 1 3 13 13 C 1.34769 * 120.00001 * 275.00034 * 12 2 1 14 14 O 1.21278 * 120.00275 * 355.38839 * 13 12 2 15 15 C 1.50699 * 119.99877 * 175.38501 * 13 12 2 16 16 C 1.50695 * 109.63219 * 275.28191 * 15 13 12 17 17 O 1.20824 * 120.00170 * 119.99848 * 16 15 13 18 18 O 1.34235 * 120.00168 * 300.00204 * 16 15 13 19 19 C 1.50476 * 109.63064 * 154.69834 * 15 13 12 20 20 C 1.54070 * 112.49555 * 334.44200 * 19 15 13 21 21 C 1.54067 * 112.81847 * 318.28644 * 20 19 15 22 22 C 1.50473 * 112.49743 * 318.28075 * 21 20 19 23 23 C 1.54237 * 108.52335 * 94.14934 * 22 21 20 24 24 C 1.45549 * 112.40518 * 280.01521 * 23 22 21 25 25 H 1.09002 * 109.46880 * 59.99967 * 1 2 3 26 26 H 1.08998 * 109.47011 * 299.99721 * 1 2 3 27 27 H 1.09001 * 109.47072 * 179.97438 * 1 2 3 28 28 H 0.97002 * 119.99313 * 180.02562 * 7 6 4 29 29 H 0.97000 * 119.99678 * 95.00350 * 12 2 1 30 30 H 0.96703 * 117.00103 * 179.97438 * 18 16 15 31 31 H 1.09002 * 108.87884 * 95.21997 * 19 15 13 32 32 H 1.08995 * 108.88117 * 213.66971 * 19 15 13 33 33 H 1.09003 * 108.81745 * 197.42108 * 20 19 15 34 34 H 1.09004 * 108.81300 * 79.14416 * 20 19 15 35 35 H 1.09003 * 108.87671 * 197.50611 * 21 20 19 36 36 H 1.09000 * 108.79896 * 79.00627 * 21 20 19 37 37 H 1.09008 * 109.62456 * 334.44067 * 22 21 20 38 38 H 1.09000 * 109.63187 * 213.86489 * 22 21 20 39 39 H 1.09004 * 108.89525 * 159.26069 * 23 22 21 40 40 H 1.08994 * 108.89723 * 40.77000 * 23 22 21 41 41 H 1.08999 * 108.89283 * 301.18089 * 24 23 22 42 42 H 1.09001 * 108.81429 * 182.63602 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9429 0.8298 -2.6033 8 14 2.3225 -1.1195 -4.0080 9 1 1.3448 -2.1614 -4.4125 10 1 2.4874 -0.1401 -5.1120 11 1 3.6309 -1.7565 -3.7119 12 7 2.0184 -0.6906 1.1962 13 6 2.1470 -0.0184 2.3571 14 8 1.9391 1.1759 2.3925 15 6 2.5493 -0.7507 3.6113 16 6 1.3295 -1.3542 4.2585 17 8 1.2597 -2.5497 4.4188 18 8 0.3205 -0.5636 4.6568 19 6 3.2112 0.2064 4.5653 20 6 3.8540 1.4069 3.8447 21 6 4.5914 1.0038 2.5533 22 6 5.3844 -0.2647 2.7152 23 6 4.5145 -1.4495 2.2481 24 6 3.5549 -1.8661 3.2601 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 0.7084 1.1610 -3.4844 29 1 2.2491 -1.6318 1.1525 30 1 -0.4411 -0.9965 5.0664 31 1 2.4650 0.5757 5.2688 32 1 3.9832 -0.3263 5.1204 33 1 4.5640 1.8837 4.5206 34 1 3.0737 2.1255 3.5941 35 1 5.2684 1.8089 2.2678 36 1 3.8578 0.8622 1.7596 37 1 5.6521 -0.3979 3.7635 38 1 6.2879 -0.2118 2.1077 39 1 5.1639 -2.2918 2.0094 40 1 3.9737 -1.1571 1.3481 41 1 4.0953 -2.1514 4.1627 42 1 3.0063 -2.7319 2.8891 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588988146.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:53 Heat of formation + Delta-G solvation = -123.552060 kcal Electronic energy + Delta-G solvation = -24811.041733 eV Core-core repulsion = 21370.298242 eV Total energy + Delta-G solvation = -3440.743491 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.55816 -39.46125 -36.85921 -36.09030 -35.09548 -33.00379 -32.43604 -31.62956 -28.86059 -26.19296 -25.27402 -24.48618 -22.55708 -22.18506 -20.27151 -19.55304 -19.24421 -18.08701 -17.33591 -16.39788 -15.79024 -15.69295 -15.20183 -14.84920 -14.59969 -14.45080 -13.82654 -13.57925 -13.12939 -13.06540 -12.77179 -12.44575 -12.37263 -11.89407 -11.57919 -11.48703 -11.31759 -11.11590 -11.02323 -10.93028 -10.76498 -10.61156 -10.47413 -10.40634 -10.26529 -10.20260 -10.05456 -9.79816 -9.07747 -8.82091 -8.57100 -7.89308 -6.15103 -4.24337 2.12213 2.80882 3.23058 3.30227 3.31990 3.45338 3.87740 4.33400 4.52267 4.73198 5.04052 5.17551 5.18462 5.28103 5.31793 5.44002 5.49181 5.53272 5.56776 5.92703 6.00165 6.04127 6.06263 6.20493 6.28666 6.42204 6.48284 6.50622 6.54606 6.74020 6.80121 6.87788 6.93482 7.10244 7.39851 7.49985 7.64828 7.85602 7.89575 8.10675 8.55743 8.72984 9.00318 9.43031 10.90772 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.019128 B = 0.006254 C = 0.005727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.439371 B = 4476.095726 C = 4888.181960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.264 3.736 3 H 0.053 0.947 4 C -0.533 4.533 5 H 0.061 0.939 6 C 0.068 3.932 7 N -0.882 5.882 8 Si 0.900 3.100 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.707 5.707 13 C 0.530 3.470 14 O -0.526 6.526 15 C -0.071 4.071 16 C 0.500 3.500 17 O -0.511 6.511 18 O -0.502 6.502 19 C -0.093 4.093 20 C -0.113 4.113 21 C -0.142 4.142 22 C -0.113 4.113 23 C -0.152 4.152 24 C -0.097 4.097 25 H 0.092 0.908 26 H 0.014 0.986 27 H 0.026 0.974 28 H 0.264 0.736 29 H 0.391 0.609 30 H 0.408 0.592 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.048 0.952 34 H 0.096 0.904 35 H 0.055 0.945 36 H 0.087 0.913 37 H 0.059 0.941 38 H 0.061 0.939 39 H 0.068 0.932 40 H 0.094 0.906 41 H 0.074 0.926 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.674 -3.232 12.760 13.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.163 3.837 3 H 0.070 0.930 4 C -0.572 4.572 5 H 0.080 0.920 6 C -0.136 4.136 7 N -0.520 5.520 8 Si 0.728 3.272 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.357 5.357 13 C 0.314 3.686 14 O -0.404 6.404 15 C -0.075 4.075 16 C 0.341 3.659 17 O -0.399 6.399 18 O -0.312 6.312 19 C -0.131 4.131 20 C -0.150 4.150 21 C -0.179 4.179 22 C -0.150 4.150 23 C -0.189 4.189 24 C -0.135 4.135 25 H 0.110 0.890 26 H 0.033 0.967 27 H 0.045 0.955 28 H 0.074 0.926 29 H 0.226 0.774 30 H 0.267 0.733 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.067 0.933 34 H 0.114 0.886 35 H 0.074 0.926 36 H 0.105 0.895 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.112 0.888 41 H 0.092 0.908 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.725 -2.376 12.459 13.535 hybrid contribution -0.158 -1.333 -0.539 1.446 sum 4.567 -3.709 11.920 13.293 Atomic orbital electron populations 1.22104 0.98490 0.99154 1.00967 1.18798 0.90965 0.94150 0.79819 0.92954 1.21186 1.32545 1.13227 0.90226 0.92045 1.24868 0.94785 0.94904 0.99023 1.69898 1.35795 1.22383 1.23906 0.86464 0.79221 0.79290 0.82242 1.20577 1.21074 1.19797 1.46864 1.64565 1.13764 1.10472 1.19305 0.77964 0.87511 0.83867 1.90626 1.50616 1.14064 1.85116 1.20650 0.91495 0.98620 0.96781 1.22855 0.83521 0.84728 0.74787 1.90694 1.79937 1.16405 1.52816 1.84615 1.29587 1.44297 1.72741 1.21181 0.99400 0.95951 0.96568 1.22008 0.99720 0.97665 0.95657 1.21733 0.99842 0.97018 0.99297 1.21323 0.98051 0.94885 1.00780 1.20968 0.98434 0.99125 1.00411 1.20453 0.95879 0.96096 1.01049 0.88990 0.96687 0.95525 0.92561 0.77446 0.73336 0.91026 0.91327 0.93289 0.88555 0.92617 0.89517 0.92218 0.92056 0.91344 0.88835 0.90769 0.90289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.64 9.26 37.16 0.34 -3.29 16 2 C 0.26 6.47 2.60 -69.08 -0.18 6.29 16 3 H 0.05 1.46 7.52 -51.93 -0.39 1.07 16 4 C -0.53 -13.71 8.73 -34.44 -0.30 -14.01 16 5 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -24.34 11.32 55.43 0.63 -23.71 16 8 Si 0.90 20.36 29.54 -169.99 -5.02 15.34 16 9 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 10 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 12 N -0.71 -14.29 3.41 -54.93 -0.19 -14.47 16 13 C 0.53 10.06 3.20 -10.99 -0.04 10.02 16 14 O -0.53 -11.44 11.96 5.56 0.07 -11.38 16 15 C -0.07 -1.09 0.68 -157.43 -0.11 -1.19 16 16 C 0.50 7.68 6.80 36.00 0.24 7.92 16 17 O -0.51 -8.44 16.35 -18.75 -0.31 -8.74 16 18 O -0.50 -6.83 12.89 -39.27 -0.51 -7.34 16 19 C -0.09 -1.27 4.61 -27.43 -0.13 -1.40 16 20 C -0.11 -1.67 5.06 -25.62 -0.13 -1.80 16 21 C -0.14 -2.22 5.14 -27.44 -0.14 -2.36 16 22 C -0.11 -1.49 5.61 -27.35 -0.15 -1.65 16 23 C -0.15 -2.09 5.04 -29.60 -0.15 -2.24 16 24 C -0.10 -1.32 3.41 -29.60 -0.10 -1.42 16 25 H 0.09 2.44 6.07 -51.93 -0.32 2.13 16 26 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 29 H 0.39 7.26 6.40 -40.82 -0.26 7.00 16 30 H 0.41 3.46 9.10 45.56 0.41 3.87 16 31 H 0.07 0.96 7.36 -51.93 -0.38 0.58 16 32 H 0.07 0.79 6.63 -51.93 -0.34 0.45 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.10 1.67 6.05 -51.93 -0.31 1.36 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.09 1.66 4.17 -51.93 -0.22 1.45 16 37 H 0.06 0.70 6.98 -51.92 -0.36 0.33 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.09 1.54 4.39 -51.93 -0.23 1.32 16 41 H 0.07 0.88 7.47 -51.93 -0.39 0.49 16 42 H 0.08 1.10 6.99 -51.93 -0.36 0.74 16 LS Contribution 316.25 15.07 4.77 4.77 Total: -1.00 -29.94 316.25 -6.72 -36.65 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: -5.23 Total: 12.32 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: -0.93 Total: -3.44 kcal Atomic # 7 Polarization: -38.62 SS G_CDS: 0.44 Total: -38.18 kcal Atomic # 8 Polarization: -26.71 SS G_CDS: -0.75 Total: -27.46 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.94 -6.72 -36.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588988146.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.897 kcal (2) G-P(sol) polarization free energy of solvation -29.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds