Wall clock time and date at job start Tue Mar 31 2020 06:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47004 * 2 1 4 4 C 1.50699 * 109.46972 * 240.00292 * 2 1 3 5 5 H 1.08001 * 119.99915 * 239.99643 * 4 2 1 6 6 C 1.37880 * 119.99896 * 60.00270 * 4 2 1 7 7 N 1.31508 * 120.00241 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99572 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47087 * 90.00122 * 8 6 4 10 10 H 1.48503 * 109.46826 * 209.99491 * 8 6 4 11 11 H 1.48495 * 109.47634 * 329.99794 * 8 6 4 12 12 C 1.50695 * 109.47092 * 120.00370 * 2 1 3 13 13 O 1.21283 * 120.00240 * 87.61592 * 12 2 1 14 14 N 1.34776 * 120.00002 * 267.61382 * 12 2 1 15 15 C 1.46928 * 120.63028 * 5.23866 * 14 12 2 16 16 H 1.09004 * 109.58744 * 6.59881 * 15 14 12 17 17 C 1.53001 * 109.58574 * 246.17668 * 15 14 12 18 18 C 1.53190 * 108.77877 * 126.38783 * 15 14 12 19 19 C 1.53047 * 109.31069 * 54.63555 * 18 15 14 20 20 H 1.08996 * 109.46326 * 58.63968 * 19 18 15 21 21 C 1.50701 * 109.45555 * 178.61956 * 19 18 15 22 22 O 1.20820 * 120.00343 * 359.97438 * 21 19 18 23 23 O 1.34230 * 119.99322 * 180.02562 * 21 19 18 24 24 C 1.53040 * 109.53426 * 298.63294 * 19 18 15 25 25 C 1.46924 * 120.63395 * 185.23349 * 14 12 2 26 26 H 1.09007 * 109.70448 * 353.46519 * 25 14 12 27 27 C 1.52997 * 109.58851 * 113.82118 * 25 14 12 28 28 H 1.08996 * 109.46866 * 174.15734 * 1 2 3 29 29 H 1.09002 * 109.47082 * 294.15582 * 1 2 3 30 30 H 1.09004 * 109.47033 * 54.15905 * 1 2 3 31 31 H 0.97002 * 120.00285 * 180.02562 * 7 6 4 32 32 H 1.09007 * 109.46932 * 287.22993 * 17 15 14 33 33 H 1.09000 * 109.47079 * 47.22785 * 17 15 14 34 34 H 1.08996 * 109.47404 * 167.22997 * 17 15 14 35 35 H 1.09003 * 109.49781 * 294.68487 * 18 15 14 36 36 H 1.08997 * 109.49971 * 174.58183 * 18 15 14 37 37 H 0.96703 * 116.99646 * 179.97438 * 23 21 19 38 38 H 1.09001 * 109.49588 * 181.32085 * 24 19 18 39 39 H 1.08995 * 109.50167 * 301.38077 * 24 19 18 40 40 H 1.09001 * 109.47358 * 206.60664 * 27 25 14 41 41 H 1.09001 * 109.47419 * 326.60768 * 27 25 14 42 42 H 1.09000 * 109.47064 * 86.60551 * 27 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9428 0.8298 -2.6034 8 14 2.3225 -1.1193 -4.0080 9 1 1.3447 -2.1613 -4.4125 10 1 2.4872 -0.1399 -5.1121 11 1 3.6308 -1.7564 -3.7121 12 6 2.0323 -0.7105 1.2304 13 8 2.1933 -1.9124 1.2134 14 7 2.3027 -0.0102 2.3497 15 6 2.0055 1.4268 2.4238 16 1 1.4637 1.7345 1.5295 17 6 3.3118 2.2159 2.5325 18 6 1.1429 1.6887 3.6624 19 6 1.8495 1.1284 4.8990 20 1 2.8265 1.6001 5.0039 21 6 1.0196 1.4142 6.1240 22 8 -0.0288 2.0056 6.0190 23 8 1.4457 1.0127 7.3319 24 6 2.0276 -0.3838 4.7453 25 6 2.9003 -0.6691 3.5190 26 1 2.9509 -1.7447 3.3489 27 6 4.3091 -0.1201 3.7530 28 1 -0.3633 -1.0223 -0.1046 29 1 -0.3633 0.4205 0.9377 30 1 -0.3633 0.6018 -0.8331 31 1 0.7081 1.1611 -3.4844 32 1 3.7347 2.0832 3.5284 33 1 4.0187 1.8528 1.7863 34 1 3.1129 3.2736 2.3601 35 1 0.1763 1.1993 3.5427 36 1 0.9954 2.7619 3.7828 37 1 0.8794 1.2192 8.0881 38 1 2.5098 -0.7857 5.6365 39 1 1.0527 -0.8538 4.6160 40 1 4.9123 -0.8721 4.2618 41 1 4.7670 0.1257 2.7949 42 1 4.2516 0.7772 4.3691 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592210579.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:46 Heat of formation + Delta-G solvation = -133.878479 kcal Electronic energy + Delta-G solvation = -24058.666429 eV Core-core repulsion = 20617.475151 eV Total energy + Delta-G solvation = -3441.191278 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.95758 -39.67316 -37.28921 -36.26704 -33.98830 -32.96390 -32.53924 -30.41583 -29.42836 -26.02102 -25.55768 -25.15389 -22.97721 -22.00197 -21.18898 -19.82053 -18.26252 -17.85100 -17.20493 -16.28173 -16.01383 -15.68878 -14.96778 -14.57236 -14.40217 -14.29951 -13.87439 -13.64678 -13.08790 -13.02213 -12.82084 -12.69117 -12.45455 -12.30538 -11.76126 -11.66021 -11.45727 -11.37503 -11.12357 -10.95794 -10.83242 -10.68332 -10.66579 -10.55613 -10.42233 -10.29062 -10.16724 -10.02389 -8.97312 -8.56512 -8.28751 -8.11819 -6.04129 -4.07088 2.05738 2.86541 3.33201 3.39028 3.43541 3.57996 3.70232 4.45351 4.47746 4.59319 4.83398 5.03567 5.17005 5.18798 5.27557 5.28928 5.41410 5.49374 5.65102 5.66726 5.74278 5.89700 5.91636 5.93188 5.99614 6.11017 6.21326 6.29356 6.34023 6.43539 6.47452 6.69131 6.86829 7.00896 7.15602 7.47057 7.73472 7.76806 7.97107 8.10080 8.37913 8.97079 9.22059 9.57466 11.03521 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.028754 B = 0.004698 C = 0.004474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.559367 B = 5958.442668 C = 6257.099634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.031 3.969 3 H 0.048 0.952 4 C -0.500 4.500 5 H 0.066 0.934 6 C 0.061 3.939 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.527 3.473 13 O -0.548 6.548 14 N -0.619 5.619 15 C 0.136 3.864 16 H 0.113 0.887 17 C -0.172 4.172 18 C -0.113 4.113 19 C -0.081 4.081 20 H 0.115 0.885 21 C 0.482 3.518 22 O -0.514 6.514 23 O -0.517 6.517 24 C -0.117 4.117 25 C 0.136 3.864 26 H 0.102 0.898 27 C -0.167 4.167 28 H 0.036 0.964 29 H 0.011 0.989 30 H 0.090 0.910 31 H 0.261 0.739 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.407 0.593 38 H 0.083 0.917 39 H 0.072 0.928 40 H 0.058 0.942 41 H 0.068 0.932 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.417 4.258 17.072 17.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.011 3.989 3 H 0.066 0.934 4 C -0.538 4.538 5 H 0.084 0.916 6 C -0.140 4.140 7 N -0.533 5.533 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.198 1.198 12 C 0.319 3.681 13 O -0.424 6.424 14 N -0.355 5.355 15 C 0.032 3.968 16 H 0.131 0.869 17 C -0.230 4.230 18 C -0.151 4.151 19 C -0.100 4.100 20 H 0.132 0.868 21 C 0.324 3.676 22 O -0.401 6.401 23 O -0.329 6.329 24 C -0.156 4.156 25 C 0.032 3.968 26 H 0.120 0.880 27 C -0.224 4.224 28 H 0.055 0.945 29 H 0.030 0.970 30 H 0.109 0.891 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.096 0.904 36 H 0.100 0.900 37 H 0.265 0.735 38 H 0.101 0.899 39 H 0.090 0.910 40 H 0.077 0.923 41 H 0.087 0.913 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.380 3.768 16.515 17.273 hybrid contribution -0.150 -0.167 -0.199 0.301 sum 3.230 3.600 16.316 17.018 Atomic orbital electron populations 1.21698 0.96197 1.01068 0.99677 1.18911 0.94251 0.96596 0.89191 0.93449 1.21019 1.31316 1.12350 0.89116 0.91551 1.24915 0.95074 0.95004 0.98999 1.69874 1.36907 1.22955 1.23565 0.86474 0.79405 0.79298 0.82156 1.20616 1.21270 1.19843 1.22029 0.74551 0.87635 0.83844 1.90521 1.52841 1.15447 1.83602 1.48571 1.64093 1.08815 1.13986 1.21279 0.95719 0.81008 0.98842 0.86941 1.22540 0.98007 0.99985 1.02467 1.21881 0.99353 1.01899 0.91970 1.21197 0.99758 0.99508 0.89523 0.86775 1.23686 0.84808 0.74527 0.84529 1.90721 1.24040 1.38648 1.86714 1.84555 1.54760 1.75663 1.17917 1.21933 1.01772 0.92515 0.99331 1.20961 0.91597 0.99503 0.84726 0.88015 1.22525 0.96389 1.01005 1.02514 0.94519 0.97047 0.89133 0.92922 0.91985 0.91407 0.91907 0.90394 0.89963 0.73493 0.89861 0.90954 0.92308 0.91338 0.92078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 8.70 37.16 0.32 -2.72 16 2 C 0.03 0.77 1.81 -92.93 -0.17 0.61 16 3 H 0.05 1.16 6.32 -51.93 -0.33 0.84 16 4 C -0.50 -14.00 8.32 -34.44 -0.29 -14.29 16 5 H 0.07 1.96 7.19 -52.49 -0.38 1.58 16 6 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 7 N -0.89 -24.77 11.38 55.43 0.63 -24.14 16 8 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 9 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 10 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 12 C 0.53 11.92 6.71 -10.99 -0.07 11.85 16 13 O -0.55 -14.14 15.45 5.56 0.09 -14.06 16 14 N -0.62 -10.68 2.45 -157.73 -0.39 -11.07 16 15 C 0.14 1.99 2.92 -67.60 -0.20 1.79 16 16 H 0.11 1.88 5.34 -51.93 -0.28 1.60 16 17 C -0.17 -2.11 7.95 37.16 0.30 -1.81 16 18 C -0.11 -1.45 4.13 -26.61 -0.11 -1.56 16 19 C -0.08 -0.90 2.27 -91.73 -0.21 -1.10 16 20 H 0.11 1.08 4.88 -51.93 -0.25 0.83 16 21 C 0.48 5.46 7.63 36.01 0.27 5.73 16 22 O -0.51 -7.39 16.74 -18.75 -0.31 -7.70 16 23 O -0.52 -4.37 13.30 -39.26 -0.52 -4.89 16 24 C -0.12 -1.38 4.76 -26.61 -0.13 -1.51 16 25 C 0.14 1.95 3.21 -67.60 -0.22 1.73 16 26 H 0.10 1.67 7.01 -51.93 -0.36 1.31 16 27 C -0.17 -1.95 7.94 37.16 0.30 -1.65 16 28 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.01 0.22 7.95 -51.93 -0.41 -0.19 16 30 H 0.09 2.30 6.25 -51.93 -0.32 1.98 16 31 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 32 H 0.06 0.63 3.81 -51.93 -0.20 0.44 16 33 H 0.07 0.94 7.55 -51.93 -0.39 0.55 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.08 1.14 8.13 -51.93 -0.42 0.71 16 36 H 0.08 0.97 8.07 -51.93 -0.42 0.55 16 37 H 0.41 1.76 9.10 45.56 0.41 2.17 16 38 H 0.08 0.82 8.08 -51.93 -0.42 0.40 16 39 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.07 0.91 7.05 -51.93 -0.37 0.55 16 42 H 0.06 0.59 4.36 -51.93 -0.23 0.36 16 LS Contribution 323.78 15.07 4.88 4.88 Total: -1.00 -32.76 323.78 -6.13 -38.89 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -5.19 Total: 2.84 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: -0.29 Total: -1.35 kcal Atomic # 7 Polarization: -35.46 SS G_CDS: 0.24 Total: -35.21 kcal Atomic # 8 Polarization: -25.90 SS G_CDS: -0.75 Total: -26.65 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.76 -6.13 -38.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592210579.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.988 kcal (2) G-P(sol) polarization free energy of solvation -32.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds