Wall clock time and date at job start Tue Mar 31 2020 06:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08992 * 109.47115 * 2 1 4 4 C 1.50705 * 109.47245 * 239.99668 * 2 1 3 5 5 H 1.07998 * 119.99861 * 240.00306 * 4 2 1 6 6 C 1.37875 * 119.99974 * 59.99904 * 4 2 1 7 7 N 1.31518 * 119.99845 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00278 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.46978 * 59.99755 * 8 6 4 10 10 H 1.48493 * 109.47099 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.46753 * 300.00355 * 8 6 4 12 12 C 1.50707 * 109.46825 * 119.99837 * 2 1 3 13 13 O 1.21277 * 119.99608 * 115.81273 * 12 2 1 14 14 N 1.34770 * 119.99781 * 295.53548 * 12 2 1 15 15 C 1.46935 * 120.62723 * 176.03538 * 14 12 2 16 16 H 1.09002 * 109.58325 * 113.84201 * 15 14 12 17 17 C 1.52998 * 109.58377 * 353.41915 * 15 14 12 18 18 C 1.52761 * 109.00625 * 233.58325 * 15 14 12 19 19 C 1.53041 * 109.38278 * 305.58836 * 18 15 14 20 20 C 1.50693 * 109.44954 * 181.25642 * 19 18 15 21 21 O 1.20826 * 120.00203 * 239.93818 * 20 19 18 22 22 O 1.34232 * 120.00222 * 59.93428 * 20 19 18 23 23 C 1.53043 * 109.53762 * 61.24088 * 19 18 15 24 24 C 1.46927 * 120.63552 * 356.31231 * 14 12 2 25 25 H 1.09002 * 109.58367 * 6.44005 * 24 14 12 26 26 C 1.52995 * 109.58771 * 246.16183 * 24 14 12 27 27 H 1.09004 * 109.46779 * 174.34345 * 1 2 3 28 28 H 1.08994 * 109.47078 * 294.33901 * 1 2 3 29 29 H 1.09002 * 109.47250 * 54.34721 * 1 2 3 30 30 H 0.96998 * 120.00158 * 179.97438 * 7 6 4 31 31 H 1.08991 * 109.47465 * 67.32322 * 17 15 14 32 32 H 1.09004 * 109.46830 * 187.31678 * 17 15 14 33 33 H 1.08998 * 109.47373 * 307.31640 * 17 15 14 34 34 H 1.08999 * 109.56080 * 185.55522 * 18 15 14 35 35 H 1.08996 * 109.36333 * 65.50052 * 18 15 14 36 36 H 1.09008 * 109.45955 * 301.21916 * 19 18 15 37 37 H 0.96700 * 117.00259 * 179.97438 * 22 20 19 38 38 H 1.09001 * 109.49639 * 178.68582 * 23 19 18 39 39 H 1.08996 * 109.52253 * 58.60191 * 23 19 18 40 40 H 1.08990 * 109.47522 * 59.99761 * 26 24 14 41 41 H 1.08996 * 109.47046 * 180.02562 * 26 24 14 42 42 H 1.09002 * 109.46783 * 299.99327 * 26 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3214 -1.1205 -4.0079 9 1 1.8259 -2.5204 -4.0076 10 1 1.8270 -0.4201 -5.2204 11 1 3.8064 -1.1211 -4.0081 12 6 2.0323 -0.7104 1.2306 13 8 2.6656 -1.7389 1.1209 14 7 1.7825 -0.1998 2.4525 15 6 2.1898 -0.9244 3.6641 16 1 2.9627 -0.3594 4.1853 17 6 2.7295 -2.3035 3.2799 18 6 0.9763 -1.0878 4.5776 19 6 0.3534 0.2843 4.8449 20 6 -0.8253 0.1285 5.7707 21 8 -1.9258 0.4746 5.4113 22 8 -0.6528 -0.3948 6.9947 23 6 -0.1136 0.9004 3.5241 24 6 1.0924 1.0891 2.5986 25 1 0.7554 1.4358 1.6217 26 6 2.0491 2.1172 3.2057 27 1 -0.3633 -1.0227 -0.1013 28 1 -0.3633 0.4235 0.9363 29 1 -0.3634 0.5990 -0.8350 30 1 0.7095 1.1616 -3.4844 31 1 3.6635 -2.1879 2.7301 32 1 2.9092 -2.8877 4.1824 33 1 2.0004 -2.8174 2.6535 34 1 1.2876 -1.5360 5.5212 35 1 0.2430 -1.7320 4.0926 36 1 1.0948 0.9359 5.3075 37 1 -1.4385 -0.4745 7.5528 38 1 -0.5782 1.8673 3.7178 39 1 -0.8369 0.2379 3.0487 40 1 2.9124 2.2406 2.5519 41 1 1.5352 3.0723 3.3136 42 1 2.3810 1.7710 4.1845 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592210588.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:07 Heat of formation + Delta-G solvation = -123.646729 kcal Electronic energy + Delta-G solvation = -24131.139154 eV Core-core repulsion = 20690.391557 eV Total energy + Delta-G solvation = -3440.747596 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.90173 -39.76032 -37.11500 -36.22510 -34.40242 -32.96797 -32.64062 -30.39884 -28.67301 -26.57604 -25.14515 -25.06650 -22.91796 -22.10282 -21.01102 -20.01900 -18.24013 -17.85352 -16.85983 -16.22485 -15.95232 -15.75072 -15.46347 -14.67884 -14.37889 -14.23832 -13.67223 -13.59261 -13.13492 -12.99483 -12.80121 -12.61012 -12.16420 -11.99220 -11.73691 -11.60086 -11.50768 -11.41049 -11.18593 -10.94100 -10.84965 -10.80107 -10.71081 -10.57662 -10.42359 -10.18793 -10.15172 -9.88643 -8.95214 -8.41148 -8.06621 -7.94292 -6.01291 -4.03598 2.06812 2.87628 3.37227 3.39906 3.44117 3.56954 3.70891 4.47787 4.49783 4.62007 4.84241 5.03721 5.22909 5.26800 5.32211 5.32707 5.47687 5.53834 5.60842 5.68911 5.79368 5.91451 5.99812 6.06880 6.11092 6.12977 6.27259 6.30816 6.39909 6.54128 6.67026 6.80285 6.85880 6.97339 7.21628 7.49250 7.74456 7.76862 8.01001 8.11901 8.40960 9.04097 9.26179 9.61583 11.06716 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.026136 B = 0.004892 C = 0.004550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.065806 B = 5722.653141 C = 6153.020922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.030 3.970 3 H 0.049 0.951 4 C -0.500 4.500 5 H 0.073 0.927 6 C 0.059 3.941 7 N -0.897 5.897 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.289 1.289 11 H -0.277 1.277 12 C 0.524 3.476 13 O -0.535 6.535 14 N -0.619 5.619 15 C 0.145 3.855 16 H 0.064 0.936 17 C -0.133 4.133 18 C -0.121 4.121 19 C -0.078 4.078 20 C 0.482 3.518 21 O -0.513 6.513 22 O -0.517 6.517 23 C -0.114 4.114 24 C 0.130 3.870 25 H 0.120 0.880 26 C -0.165 4.165 27 H 0.032 0.968 28 H 0.021 0.979 29 H 0.089 0.911 30 H 0.261 0.739 31 H 0.078 0.922 32 H 0.033 0.967 33 H 0.069 0.931 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.111 0.889 37 H 0.407 0.593 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.460 1.778 17.465 17.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.009 3.991 3 H 0.067 0.933 4 C -0.539 4.539 5 H 0.091 0.909 6 C -0.141 4.141 7 N -0.536 5.536 8 Si 0.727 3.273 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.203 1.203 12 C 0.316 3.684 13 O -0.411 6.411 14 N -0.356 5.356 15 C 0.042 3.958 16 H 0.082 0.918 17 C -0.190 4.190 18 C -0.160 4.160 19 C -0.097 4.097 20 C 0.325 3.675 21 O -0.401 6.401 22 O -0.329 6.329 23 C -0.152 4.152 24 C 0.026 3.974 25 H 0.138 0.862 26 C -0.223 4.223 27 H 0.051 0.949 28 H 0.040 0.960 29 H 0.108 0.892 30 H 0.070 0.930 31 H 0.097 0.903 32 H 0.052 0.948 33 H 0.088 0.912 34 H 0.101 0.899 35 H 0.091 0.909 36 H 0.129 0.871 37 H 0.265 0.735 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.138 1.446 16.875 16.975 hybrid contribution -0.409 -0.341 -0.298 0.610 sum -1.547 1.105 16.578 16.686 Atomic orbital electron populations 1.21927 0.96541 1.00930 1.00200 1.18870 0.94060 0.96698 0.89488 0.93309 1.21095 1.31041 1.12737 0.89013 0.90906 1.24932 0.95118 0.95053 0.99038 1.69870 1.37105 1.23047 1.23584 0.86532 0.79228 0.79744 0.81771 1.20256 1.21431 1.20257 1.21930 0.77532 0.84886 0.84086 1.90566 1.39713 1.24838 1.86020 1.48495 1.60405 1.21090 1.05570 1.20989 0.94280 0.94578 0.85983 0.91761 1.22159 1.03812 0.93887 0.99115 1.21973 0.98812 0.94397 1.00797 1.21131 0.93910 1.00486 0.94197 1.23676 0.90778 0.72626 0.80452 1.90725 1.27438 1.46436 1.75474 1.84553 1.44380 1.76430 1.27555 1.21899 0.98340 1.02115 0.92890 1.21454 0.90994 0.83891 1.01101 0.86219 1.22209 1.00388 0.98622 1.01087 0.94855 0.96020 0.89229 0.92965 0.90317 0.94829 0.91220 0.89920 0.90891 0.87127 0.73491 0.90009 0.90160 0.91725 0.91595 0.92735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 8.40 37.16 0.31 -2.83 16 2 C 0.03 0.72 1.79 -92.92 -0.17 0.56 16 3 H 0.05 1.23 7.55 -51.93 -0.39 0.83 16 4 C -0.50 -13.98 8.37 -34.44 -0.29 -14.27 16 5 H 0.07 2.14 6.76 -52.49 -0.35 1.79 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 7 N -0.90 -24.94 11.38 55.43 0.63 -24.31 16 8 Si 0.90 21.77 29.54 -169.99 -5.02 16.74 16 9 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 C 0.52 11.51 6.84 -10.99 -0.08 11.44 16 13 O -0.54 -13.05 11.00 5.56 0.06 -12.99 16 14 N -0.62 -10.51 2.68 -157.98 -0.42 -10.93 16 15 C 0.15 2.08 3.06 -67.82 -0.21 1.87 16 16 H 0.06 0.82 7.52 -51.93 -0.39 0.43 16 17 C -0.13 -2.12 7.60 37.16 0.28 -1.83 16 18 C -0.12 -1.45 4.56 -26.83 -0.12 -1.57 16 19 C -0.08 -0.87 2.38 -91.73 -0.22 -1.09 16 20 C 0.48 5.53 7.63 36.00 0.27 5.81 16 21 O -0.51 -7.47 16.74 -18.75 -0.31 -7.78 16 22 O -0.52 -4.46 13.30 -39.26 -0.52 -4.99 16 23 C -0.11 -1.47 3.89 -26.61 -0.10 -1.58 16 24 C 0.13 1.87 2.24 -67.60 -0.15 1.72 16 25 H 0.12 1.97 4.38 -51.93 -0.23 1.75 16 26 C -0.16 -1.96 9.03 37.16 0.34 -1.62 16 27 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.02 0.41 4.67 -51.93 -0.24 0.17 16 29 H 0.09 2.23 6.24 -51.93 -0.32 1.90 16 30 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 31 H 0.08 1.44 6.70 -51.93 -0.35 1.09 16 32 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 1.29 6.80 -51.93 -0.35 0.94 16 34 H 0.08 0.84 8.08 -51.93 -0.42 0.42 16 35 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.11 1.04 6.49 -51.92 -0.34 0.70 16 37 H 0.41 1.83 9.10 45.56 0.41 2.24 16 38 H 0.08 0.97 8.07 -51.93 -0.42 0.55 16 39 H 0.08 1.19 7.55 -51.93 -0.39 0.80 16 40 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.05 0.56 5.74 -51.93 -0.30 0.27 16 LS Contribution 321.73 15.07 4.85 4.85 Total: -1.00 -31.91 321.73 -6.30 -38.20 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -5.33 Total: 3.07 kcal Atomic # 6 Polarization: -1.64 SS G_CDS: -0.22 Total: -1.87 kcal Atomic # 7 Polarization: -35.45 SS G_CDS: 0.21 Total: -35.24 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: -0.77 Total: -25.76 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.91 -6.30 -38.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592210588.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.443 kcal (2) G-P(sol) polarization free energy of solvation -31.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds