Wall clock time and date at job start Tue Mar 31 2020 06:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47361 * 2 1 4 4 C 1.50697 * 109.47268 * 239.99937 * 2 1 3 5 5 H 1.08000 * 119.99826 * 240.00398 * 4 2 1 6 6 C 1.37875 * 120.00163 * 59.99961 * 4 2 1 7 7 N 1.31508 * 119.99804 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99827 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47062 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46754 * 120.00287 * 8 6 4 11 11 H 1.48496 * 109.46749 * 239.99896 * 8 6 4 12 12 C 1.50701 * 109.46773 * 119.99537 * 2 1 3 13 13 O 1.21282 * 119.99523 * 119.99905 * 12 2 1 14 14 N 1.34772 * 120.00134 * 299.99870 * 12 2 1 15 15 C 1.46508 * 119.99901 * 180.02562 * 14 12 2 16 16 H 1.09002 * 108.68664 * 323.35515 * 15 14 12 17 17 C 1.54064 * 108.81370 * 81.71325 * 15 14 12 18 18 C 1.50473 * 112.49962 * 162.58177 * 17 15 14 19 19 C 1.54246 * 108.52394 * 265.85087 * 18 17 15 20 20 C 1.45547 * 112.40077 * 79.97806 * 19 18 17 21 21 C 1.54237 * 112.40794 * 298.05892 * 20 19 18 22 22 C 1.50476 * 108.51438 * 80.00066 * 21 20 19 23 23 H 1.09002 * 108.87623 * 26.62410 * 22 21 20 24 24 C 1.50698 * 108.87772 * 145.06347 * 22 21 20 25 25 O 1.20822 * 120.00052 * 120.00305 * 24 22 21 26 26 O 1.34229 * 120.00288 * 300.00095 * 24 22 21 27 27 H 1.08994 * 109.47295 * 300.00717 * 1 2 3 28 28 H 1.09001 * 109.46579 * 59.99868 * 1 2 3 29 29 H 1.08998 * 109.47361 * 179.97438 * 1 2 3 30 30 H 0.97008 * 119.99965 * 179.97438 * 7 6 4 31 31 H 0.96996 * 120.00564 * 0.02562 * 14 12 2 32 32 H 1.09003 * 108.87757 * 41.79773 * 17 15 14 33 33 H 1.09004 * 108.79789 * 283.30167 * 17 15 14 34 34 H 1.08994 * 109.62924 * 146.14287 * 18 17 15 35 35 H 1.09000 * 109.62614 * 25.55950 * 18 17 15 36 36 H 1.08997 * 108.89573 * 319.22626 * 19 18 17 37 37 H 1.08996 * 108.81921 * 200.67501 * 19 18 17 38 38 H 1.09001 * 108.89434 * 177.30529 * 20 19 18 39 39 H 1.09002 * 108.81397 * 58.76125 * 20 19 18 40 40 H 1.08999 * 109.63128 * 320.29287 * 21 20 19 41 41 H 1.09003 * 109.62855 * 199.70558 * 21 20 19 42 42 H 0.96701 * 117.00358 * 179.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8295 -2.6034 8 14 2.3215 -1.1205 -4.0079 9 1 3.1456 -2.2878 -3.6036 10 1 1.1662 -1.5868 -4.8160 11 1 3.1468 -0.1875 -4.8164 12 6 2.0323 -0.7103 1.2306 13 8 2.7295 -1.6964 1.1193 14 7 1.7067 -0.2498 2.4546 15 6 2.1955 -0.9401 3.6509 16 1 2.1996 -2.0128 3.4579 17 6 3.6383 -0.4807 3.9349 18 6 4.0766 -0.7948 5.3397 19 6 3.8136 0.4419 6.2232 20 6 2.4205 0.5454 6.6319 21 6 1.4659 0.7062 5.4312 22 6 1.2348 -0.6492 4.8196 23 1 1.3726 -1.4106 5.5873 24 6 -0.1833 -0.7209 4.3147 25 8 -0.3978 -0.9222 3.1429 26 8 -1.2080 -0.5612 5.1668 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 0.7088 1.1611 -3.4845 31 1 1.1488 0.5387 2.5436 32 1 3.7030 0.5960 3.7777 33 1 4.3098 -0.9797 3.2361 34 1 5.1408 -1.0304 5.3472 35 1 3.5081 -1.6437 5.7194 36 1 4.0854 1.3382 5.6658 37 1 4.4388 0.3772 7.1137 38 1 2.3087 1.4074 7.2896 39 1 2.1476 -0.3554 7.1817 40 1 1.9154 1.3695 4.6923 41 1 0.5169 1.1212 5.7709 42 1 -2.0996 -0.6151 4.7963 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592210859.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:52 Heat of formation + Delta-G solvation = -138.803178 kcal Electronic energy + Delta-G solvation = -23917.337772 eV Core-core repulsion = 20475.932943 eV Total energy + Delta-G solvation = -3441.404829 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.91038 -38.92088 -37.88744 -36.10532 -33.98263 -33.54790 -32.48736 -31.09367 -29.69063 -25.71077 -25.00812 -24.73322 -22.42145 -22.05961 -20.75788 -19.28843 -19.13483 -17.91048 -16.97956 -16.12418 -16.05205 -15.74177 -15.20902 -14.98305 -14.51672 -14.28175 -13.86466 -13.56537 -13.33547 -13.10399 -12.88497 -12.69685 -12.34255 -12.21263 -11.83924 -11.43361 -11.33843 -11.03396 -10.94044 -10.90400 -10.75957 -10.63303 -10.51217 -10.50343 -10.42165 -10.07187 -10.05666 -9.84737 -8.81198 -8.45350 -8.17815 -8.13587 -5.92153 -3.94270 2.29050 2.96530 3.38447 3.45392 3.54380 3.93462 4.01513 4.36638 4.50524 4.56551 4.66525 4.92212 4.95330 5.11049 5.18700 5.27606 5.40622 5.42395 5.44718 5.70054 5.74586 5.86878 5.87547 5.94140 6.03574 6.13195 6.20181 6.26513 6.43104 6.51197 6.57242 6.86114 7.09010 7.15018 7.28582 7.66210 7.90251 7.97921 8.12897 8.31639 8.62889 9.14905 9.46319 9.70738 11.15481 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.023489 B = 0.004877 C = 0.004330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.770865 B = 5739.317080 C = 6464.765083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.030 3.970 3 H 0.047 0.953 4 C -0.495 4.495 5 H 0.073 0.927 6 C 0.056 3.944 7 N -0.898 5.898 8 Si 0.897 3.103 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.285 1.285 12 C 0.528 3.472 13 O -0.554 6.554 14 N -0.726 5.726 15 C 0.163 3.837 16 H 0.083 0.917 17 C -0.128 4.128 18 C -0.116 4.116 19 C -0.122 4.122 20 C -0.112 4.112 21 C -0.115 4.115 22 C -0.081 4.081 23 H 0.113 0.887 24 C 0.463 3.537 25 O -0.475 6.475 26 O -0.524 6.524 27 H 0.013 0.987 28 H 0.086 0.914 29 H 0.029 0.971 30 H 0.258 0.742 31 H 0.392 0.608 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.059 0.941 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.438 1.608 21.036 21.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.009 3.991 3 H 0.065 0.935 4 C -0.533 4.533 5 H 0.092 0.908 6 C -0.144 4.144 7 N -0.538 5.538 8 Si 0.726 3.274 9 H -0.196 1.196 10 H -0.212 1.212 11 H -0.211 1.211 12 C 0.318 3.682 13 O -0.431 6.431 14 N -0.379 5.379 15 C 0.057 3.943 16 H 0.101 0.899 17 C -0.167 4.167 18 C -0.154 4.154 19 C -0.160 4.160 20 C -0.150 4.150 21 C -0.153 4.153 22 C -0.101 4.101 23 H 0.130 0.870 24 C 0.303 3.697 25 O -0.359 6.359 26 O -0.337 6.337 27 H 0.032 0.968 28 H 0.105 0.895 29 H 0.048 0.952 30 H 0.068 0.932 31 H 0.227 0.773 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.097 0.903 41 H 0.096 0.904 42 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 0.331 0.949 20.605 20.630 hybrid contribution -0.712 -0.106 -1.015 1.244 sum -0.381 0.844 19.590 19.612 Atomic orbital electron populations 1.21616 0.96279 0.99764 1.00348 1.18837 0.94334 0.96482 0.89492 0.93534 1.21214 1.30446 1.12568 0.89096 0.90846 1.24951 0.95270 0.95137 0.99038 1.69901 1.37431 1.23307 1.23152 0.86432 0.78558 0.79791 0.82665 1.19616 1.21161 1.21148 1.21773 0.77930 0.84045 0.84433 1.90498 1.38688 1.27092 1.86796 1.46209 1.54528 1.32186 1.04978 1.21072 0.90987 0.98814 0.83464 0.89876 1.21763 0.95827 1.02240 0.96869 1.21343 1.01258 0.97752 0.95059 1.20555 0.96693 0.98815 0.99902 1.20449 0.95152 1.02251 0.97118 1.21431 1.00810 0.94803 0.98245 1.21246 0.87563 1.01416 0.99831 0.86965 1.23536 0.88103 0.73485 0.84550 1.90915 1.85413 1.41956 1.17633 1.84493 1.18996 1.84949 1.45251 0.96846 0.89517 0.95182 0.93219 0.77345 0.91440 0.90747 0.91606 0.91715 0.91865 0.92270 0.91804 0.91893 0.90339 0.90421 0.73370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.07 8.87 37.16 0.33 -2.74 16 2 C 0.03 0.78 2.64 -92.92 -0.25 0.54 16 3 H 0.05 1.27 8.14 -51.93 -0.42 0.84 16 4 C -0.49 -14.69 8.37 -34.44 -0.29 -14.98 16 5 H 0.07 2.30 6.75 -52.49 -0.35 1.95 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 7 N -0.90 -26.22 11.32 55.43 0.63 -25.59 16 8 Si 0.90 22.58 29.54 -169.99 -5.02 17.56 16 9 H -0.27 -6.89 7.11 56.52 0.40 -6.49 16 10 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 C 0.53 12.68 7.06 -10.99 -0.08 12.60 16 13 O -0.55 -14.96 15.13 5.56 0.08 -14.88 16 14 N -0.73 -13.32 2.91 -52.72 -0.15 -13.47 16 15 C 0.16 2.40 1.92 -66.82 -0.13 2.27 16 16 H 0.08 1.44 7.59 -51.93 -0.39 1.04 16 17 C -0.13 -1.68 4.82 -27.44 -0.13 -1.81 16 18 C -0.12 -1.11 5.61 -27.34 -0.15 -1.27 16 19 C -0.12 -0.98 5.26 -29.59 -0.16 -1.13 16 20 C -0.11 -0.83 5.26 -29.60 -0.16 -0.99 16 21 C -0.12 -1.04 5.11 -27.34 -0.14 -1.18 16 22 C -0.08 -0.89 1.89 -92.48 -0.17 -1.07 16 23 H 0.11 1.03 6.63 -51.93 -0.34 0.69 16 24 C 0.46 5.90 7.08 36.00 0.25 6.16 16 25 O -0.48 -8.17 14.31 -18.75 -0.27 -8.44 16 26 O -0.52 -5.04 12.90 -39.26 -0.51 -5.55 16 27 H 0.01 0.28 7.36 -51.93 -0.38 -0.10 16 28 H 0.09 2.36 6.07 -51.93 -0.32 2.04 16 29 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 31 H 0.39 6.72 6.97 -40.82 -0.28 6.44 16 32 H 0.07 0.87 6.62 -51.93 -0.34 0.53 16 33 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.58 6.98 -51.93 -0.36 0.22 16 36 H 0.06 0.54 7.47 -51.93 -0.39 0.15 16 37 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.06 0.43 7.47 -51.93 -0.39 0.04 16 40 H 0.08 0.77 6.98 -51.93 -0.36 0.41 16 41 H 0.08 0.66 7.32 -51.93 -0.38 0.28 16 42 H 0.41 2.56 9.10 45.56 0.41 2.97 16 LS Contribution 327.07 15.07 4.93 4.93 Total: -1.00 -34.67 327.07 -7.02 -41.70 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -5.55 Total: 5.80 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: -1.16 Total: -2.06 kcal Atomic # 7 Polarization: -39.53 SS G_CDS: 0.47 Total: -39.06 kcal Atomic # 8 Polarization: -28.17 SS G_CDS: -0.69 Total: -28.87 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -34.67 -7.02 -41.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592210859.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.108 kcal (2) G-P(sol) polarization free energy of solvation -34.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds