Wall clock time and date at job start Tue Mar 31 2020 06:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47381 * 2 1 4 4 C 1.50706 * 109.47043 * 239.99669 * 2 1 3 5 5 H 1.07997 * 120.00164 * 245.46497 * 4 2 1 6 6 C 1.37873 * 119.99557 * 65.47052 * 4 2 1 7 7 N 1.31511 * 120.00338 * 9.64724 * 6 4 2 8 8 Si 1.86802 * 119.99713 * 189.65289 * 6 4 2 9 9 H 1.48501 * 109.47468 * 84.99471 * 8 6 4 10 10 H 1.48508 * 109.47127 * 204.99090 * 8 6 4 11 11 H 1.48494 * 109.46970 * 324.99077 * 8 6 4 12 12 C 1.50702 * 109.47031 * 119.99819 * 2 1 3 13 13 O 1.21284 * 119.99735 * 119.99736 * 12 2 1 14 14 N 1.34775 * 120.00259 * 299.99869 * 12 2 1 15 15 C 1.46496 * 119.99952 * 179.97438 * 14 12 2 16 16 C 1.52998 * 109.47506 * 300.00240 * 15 14 12 17 17 C 1.53002 * 109.46881 * 60.00489 * 15 14 12 18 18 C 1.53002 * 109.47163 * 180.02562 * 17 15 14 19 19 C 1.53004 * 109.46894 * 299.99389 * 18 17 15 20 20 C 1.53009 * 109.46654 * 60.00071 * 19 18 17 21 21 C 1.52994 * 109.47240 * 299.99687 * 20 19 18 22 22 H 1.08997 * 109.47265 * 300.00250 * 21 20 19 23 23 C 1.50702 * 109.46966 * 180.02562 * 21 20 19 24 24 O 1.20830 * 120.00117 * 239.99977 * 23 21 20 25 25 O 1.34226 * 120.00000 * 60.00752 * 23 21 20 26 26 H 1.08997 * 109.47116 * 183.70225 * 1 2 3 27 27 H 1.09006 * 109.46663 * 303.70245 * 1 2 3 28 28 H 1.08995 * 109.46873 * 63.69985 * 1 2 3 29 29 H 0.97000 * 119.99988 * 180.02562 * 7 6 4 30 30 H 0.97001 * 119.99805 * 0.02562 * 14 12 2 31 31 H 1.08995 * 109.47332 * 60.00193 * 16 15 14 32 32 H 1.09000 * 109.47185 * 179.97438 * 16 15 14 33 33 H 1.08999 * 109.46876 * 299.99682 * 16 15 14 34 34 H 1.09005 * 109.47160 * 299.99421 * 17 15 14 35 35 H 1.08997 * 109.47381 * 59.99713 * 17 15 14 36 36 H 1.08997 * 109.47512 * 59.99107 * 18 17 15 37 37 H 1.09000 * 109.47229 * 180.02562 * 18 17 15 38 38 H 1.08992 * 109.47334 * 179.97438 * 19 18 17 39 39 H 1.08999 * 109.47340 * 300.00680 * 19 18 17 40 40 H 1.08999 * 109.46750 * 60.00248 * 20 19 18 41 41 H 1.09004 * 109.46709 * 179.97438 * 20 19 18 42 42 H 0.96701 * 117.00009 * 180.02562 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.5785 -1.6372 -1.1338 6 6 1.7947 -0.1774 -2.4796 7 7 1.3012 1.0363 -2.5935 8 14 2.1736 -1.1791 -4.0101 9 1 1.0200 -2.0603 -4.3232 10 1 2.4211 -0.2631 -5.1525 11 1 3.3808 -2.0101 -3.7714 12 6 2.0323 -0.7104 1.2305 13 8 2.7296 -1.6965 1.1192 14 7 1.7068 -0.2499 2.4546 15 6 2.1947 -0.9409 3.6507 16 6 1.6841 -2.3831 3.6506 17 6 3.7247 -0.9414 3.6509 18 6 4.2343 -1.6635 4.8998 19 6 3.7245 -0.9427 6.1494 20 6 2.1944 -0.9421 6.1492 21 6 1.6848 -0.2200 4.9003 22 1 2.0486 0.8075 4.9009 23 6 0.1778 -0.2189 4.9005 24 8 -0.4268 -0.7413 3.9941 25 8 -0.4928 0.3625 5.9074 26 1 -0.3633 -1.0255 0.0664 27 1 -0.3633 0.5703 0.8550 28 1 -0.3633 0.4553 -0.9213 29 1 1.1337 1.4112 -3.4723 30 1 1.1488 0.5386 2.5436 31 1 2.0474 -2.8971 2.7607 32 1 2.0475 -2.8973 4.5403 33 1 0.5941 -2.3827 3.6505 34 1 4.0880 -1.4553 2.7609 35 1 4.0884 0.0861 3.6511 36 1 3.8705 -2.6910 4.8993 37 1 5.3243 -1.6635 4.9002 38 1 4.0871 -1.4574 7.0391 39 1 4.0881 0.0848 6.1500 40 1 1.8307 -1.9697 6.1486 41 1 1.8311 -0.4290 7.0396 42 1 -1.4585 0.3375 5.8638 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592211562.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:35 Heat of formation + Delta-G solvation = -144.845618 kcal Electronic energy + Delta-G solvation = -24137.867314 eV Core-core repulsion = 20696.200465 eV Total energy + Delta-G solvation = -3441.666849 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.16863 -39.20157 -37.62520 -36.17092 -33.70555 -33.53182 -31.38965 -30.93516 -29.33068 -27.11975 -25.01224 -24.07119 -23.23745 -21.86347 -21.13069 -19.10177 -18.56072 -18.01631 -17.03829 -16.26238 -16.03213 -15.80883 -15.29709 -14.53817 -14.50119 -14.04319 -13.83910 -13.59824 -13.23700 -12.88950 -12.84233 -12.47427 -12.37498 -11.96886 -11.82292 -11.52202 -11.39172 -11.30779 -11.00739 -10.90737 -10.86628 -10.77072 -10.57074 -10.52665 -10.26935 -10.10059 -9.98085 -9.83272 -8.94208 -8.34489 -8.25852 -8.19767 -5.99083 -3.96885 2.16448 2.92618 3.38971 3.43953 3.49951 3.84538 3.89312 4.37470 4.52965 4.67218 4.75670 5.01734 5.13799 5.18901 5.27745 5.32363 5.36524 5.39565 5.62472 5.75476 5.85316 5.89739 5.95316 6.04879 6.13040 6.23740 6.33790 6.42741 6.51598 6.61016 6.68899 6.86278 6.92987 6.99625 7.26892 7.53913 7.74779 7.86381 8.04548 8.21601 8.57107 9.11866 9.39336 9.66914 11.11688 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.024662 B = 0.005013 C = 0.004446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.085680 B = 5583.757950 C = 6296.299561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.027 3.973 3 H 0.055 0.945 4 C -0.499 4.499 5 H 0.074 0.926 6 C 0.059 3.941 7 N -0.896 5.896 8 Si 0.895 3.105 9 H -0.280 1.280 10 H -0.289 1.289 11 H -0.273 1.273 12 C 0.527 3.473 13 O -0.543 6.543 14 N -0.733 5.733 15 C 0.198 3.802 16 C -0.177 4.177 17 C -0.130 4.130 18 C -0.121 4.121 19 C -0.118 4.118 20 C -0.108 4.108 21 C -0.081 4.081 22 H 0.111 0.889 23 C 0.473 3.527 24 O -0.486 6.486 25 O -0.521 6.521 26 H 0.032 0.968 27 H 0.015 0.985 28 H 0.072 0.928 29 H 0.260 0.740 30 H 0.391 0.609 31 H 0.082 0.918 32 H 0.053 0.947 33 H 0.074 0.926 34 H 0.096 0.904 35 H 0.061 0.939 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.073 0.927 41 H 0.077 0.923 42 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.031 -0.207 20.234 20.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.006 3.994 3 H 0.073 0.927 4 C -0.537 4.537 5 H 0.092 0.908 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.723 3.277 9 H -0.206 1.206 10 H -0.215 1.215 11 H -0.198 1.198 12 C 0.317 3.683 13 O -0.419 6.419 14 N -0.386 5.386 15 C 0.111 3.889 16 C -0.235 4.235 17 C -0.168 4.168 18 C -0.159 4.159 19 C -0.156 4.156 20 C -0.146 4.146 21 C -0.101 4.101 22 H 0.129 0.871 23 C 0.314 3.686 24 O -0.372 6.372 25 O -0.333 6.333 26 H 0.051 0.949 27 H 0.034 0.966 28 H 0.091 0.909 29 H 0.069 0.931 30 H 0.224 0.776 31 H 0.101 0.899 32 H 0.072 0.928 33 H 0.092 0.908 34 H 0.115 0.885 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.092 0.908 41 H 0.095 0.905 42 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 0.751 -0.941 19.743 19.779 hybrid contribution -0.922 0.072 -0.834 1.246 sum -0.172 -0.869 18.908 18.929 Atomic orbital electron populations 1.21624 0.96959 0.99172 1.00270 1.18869 0.93636 0.97249 0.89646 0.92680 1.21099 1.34948 1.08573 0.89104 0.90798 1.24943 0.95423 0.94705 0.99058 1.69966 1.45786 1.14016 1.23726 0.86547 0.78861 0.80038 0.82236 1.20639 1.21482 1.19823 1.21763 0.78209 0.84099 0.84182 1.90449 1.38160 1.26716 1.86621 1.46299 1.54955 1.32165 1.05168 1.19905 0.93555 0.92742 0.82685 1.22546 1.02881 0.95154 1.02899 1.21988 0.93762 1.01287 0.99750 1.21617 1.00426 0.99916 0.93919 1.21571 0.94179 1.01332 0.98479 1.21550 0.96784 1.01045 0.95192 1.21401 0.86970 1.03328 0.98376 0.87146 1.23513 0.91660 0.74600 0.78863 1.90781 1.70147 1.40770 1.35488 1.84526 1.26540 1.73500 1.48740 0.94868 0.96554 0.90914 0.93068 0.77575 0.89920 0.92776 0.90764 0.88529 0.92063 0.91371 0.91694 0.91458 0.91592 0.90802 0.90471 0.73406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.93 8.94 37.16 0.33 -2.60 16 2 C 0.03 0.69 2.50 -92.92 -0.23 0.46 16 3 H 0.06 1.48 8.08 -51.93 -0.42 1.06 16 4 C -0.50 -14.42 8.28 -34.44 -0.29 -14.71 16 5 H 0.07 2.25 6.79 -52.49 -0.36 1.89 16 6 C 0.06 1.69 5.17 -17.82 -0.09 1.60 16 7 N -0.90 -25.93 12.17 55.43 0.67 -25.25 16 8 Si 0.90 22.26 29.55 -169.99 -5.02 17.23 16 9 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 10 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 11 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 12 C 0.53 12.13 6.57 -10.99 -0.07 12.06 16 13 O -0.54 -13.73 11.68 5.55 0.06 -13.66 16 14 N -0.73 -13.29 4.11 -47.61 -0.20 -13.49 16 15 C 0.20 2.96 0.40 -131.82 -0.05 2.90 16 16 C -0.18 -2.85 7.39 37.16 0.27 -2.58 16 17 C -0.13 -1.86 4.66 -26.73 -0.12 -1.99 16 18 C -0.12 -1.31 5.65 -26.73 -0.15 -1.46 16 19 C -0.12 -1.01 5.92 -26.72 -0.16 -1.17 16 20 C -0.11 -0.98 4.86 -26.73 -0.13 -1.11 16 21 C -0.08 -0.92 1.99 -91.77 -0.18 -1.11 16 22 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 23 C 0.47 5.74 6.90 36.01 0.25 5.99 16 24 O -0.49 -7.67 13.44 -18.75 -0.25 -7.92 16 25 O -0.52 -4.71 13.33 -39.25 -0.52 -5.23 16 26 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.02 0.33 7.67 -51.93 -0.40 -0.07 16 28 H 0.07 1.89 6.83 -51.93 -0.35 1.53 16 29 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 30 H 0.39 6.62 7.28 -40.82 -0.30 6.33 16 31 H 0.08 1.61 6.17 -51.93 -0.32 1.29 16 32 H 0.05 0.71 4.80 -51.93 -0.25 0.47 16 33 H 0.07 1.29 5.52 -51.93 -0.29 1.00 16 34 H 0.10 1.75 6.17 -51.93 -0.32 1.43 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.07 0.76 6.43 -51.93 -0.33 0.43 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.70 6.43 -51.93 -0.33 0.36 16 41 H 0.08 0.60 8.11 -51.93 -0.42 0.17 16 42 H 0.41 2.16 9.10 45.56 0.41 2.58 16 LS Contribution 321.38 15.07 4.84 4.84 Total: -1.00 -33.16 321.38 -6.39 -39.55 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -5.35 Total: 7.63 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: -0.63 Total: -3.70 kcal Atomic # 7 Polarization: -39.22 SS G_CDS: 0.48 Total: -38.74 kcal Atomic # 8 Polarization: -26.10 SS G_CDS: -0.71 Total: -26.81 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -33.16 -6.39 -39.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592211562.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.298 kcal (2) G-P(sol) polarization free energy of solvation -33.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds