Wall clock time and date at job start Tue Mar 31 2020 06:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47140 * 2 1 4 4 C 1.50706 * 109.47430 * 240.00158 * 2 1 3 5 5 H 1.07999 * 120.00193 * 240.00552 * 4 2 1 6 6 C 1.37879 * 119.99398 * 59.99633 * 4 2 1 7 7 N 1.31514 * 119.99350 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 0.02562 * 6 4 2 9 9 H 1.48493 * 109.47326 * 270.00340 * 8 6 4 10 10 H 1.48506 * 109.46545 * 30.00090 * 8 6 4 11 11 H 1.48498 * 109.47210 * 149.99801 * 8 6 4 12 12 C 1.50699 * 109.47592 * 120.00047 * 2 1 3 13 13 O 1.21282 * 120.00038 * 119.99602 * 12 2 1 14 14 N 1.34779 * 120.00040 * 300.00473 * 12 2 1 15 15 C 1.46500 * 120.00169 * 179.97438 * 14 12 2 16 16 C 1.53000 * 109.47023 * 59.99448 * 15 14 12 17 17 C 1.53001 * 109.46826 * 299.99979 * 15 14 12 18 18 C 1.53002 * 109.46963 * 180.02562 * 17 15 14 19 19 C 1.53006 * 109.47345 * 59.99347 * 18 17 15 20 20 C 1.53002 * 109.47212 * 300.00598 * 19 18 17 21 21 C 1.52993 * 109.47066 * 59.99543 * 20 19 18 22 22 H 1.08996 * 109.47340 * 60.00420 * 21 20 19 23 23 C 1.50703 * 109.46904 * 180.02562 * 21 20 19 24 24 O 1.20825 * 120.00021 * 120.00143 * 23 21 20 25 25 O 1.34225 * 119.99932 * 299.99965 * 23 21 20 26 26 H 1.09000 * 109.47140 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47045 * 299.99907 * 1 2 3 28 28 H 1.09001 * 109.46922 * 59.99700 * 1 2 3 29 29 H 0.97005 * 119.99661 * 179.97438 * 7 6 4 30 30 H 0.96996 * 119.99844 * 359.97438 * 14 12 2 31 31 H 1.09000 * 109.46968 * 60.00089 * 16 15 14 32 32 H 1.09001 * 109.47194 * 179.97438 * 16 15 14 33 33 H 1.09002 * 109.47398 * 300.00071 * 16 15 14 34 34 H 1.09000 * 109.47437 * 299.99384 * 17 15 14 35 35 H 1.08992 * 109.47514 * 59.99987 * 17 15 14 36 36 H 1.09000 * 109.47312 * 179.97438 * 18 17 15 37 37 H 1.09004 * 109.46930 * 299.99741 * 18 17 15 38 38 H 1.09001 * 109.46289 * 60.00297 * 19 18 17 39 39 H 1.08998 * 109.46876 * 179.97438 * 19 18 17 40 40 H 1.09002 * 109.46838 * 180.02562 * 20 19 18 41 41 H 1.08996 * 109.46698 * 299.99571 * 20 19 18 42 42 H 0.96710 * 117.00273 * 180.02562 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2392 -2.4827 7 7 2.1373 -0.8595 -3.5565 8 14 0.6258 1.2799 -2.6541 9 1 -0.8021 0.8745 -2.6992 10 1 0.8491 2.1773 -1.4922 11 1 0.9771 1.9954 -3.9070 12 6 2.0324 -0.7104 1.2304 13 8 2.7297 -1.6965 1.1191 14 7 1.7068 -0.2500 2.4546 15 6 2.1948 -0.9409 3.6507 16 6 3.7248 -0.9415 3.6508 17 6 1.6843 -2.3832 3.6504 18 6 2.1934 -3.1047 4.8999 19 6 1.6831 -2.3832 6.1490 20 6 2.1935 -0.9408 6.1492 21 6 1.6844 -0.2195 4.8997 22 1 0.5944 -0.2191 4.8991 23 6 2.1877 1.2010 4.8996 24 8 2.8829 1.5955 3.9935 25 8 1.8637 2.0279 5.9060 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.9026 -0.5282 -4.4376 30 1 1.1494 0.5388 2.5436 31 1 4.0885 0.0861 3.6510 32 1 4.0879 -1.4551 4.5410 33 1 4.0880 -1.4553 2.7608 34 1 0.5943 -2.3830 3.6503 35 1 2.0475 -2.8971 2.7605 36 1 1.8294 -4.1321 4.9000 37 1 3.2834 -3.1050 4.9005 38 1 0.5930 -2.3828 6.1483 39 1 2.0454 -2.8974 7.0391 40 1 1.8303 -0.4270 7.0392 41 1 3.2835 -0.9412 6.1497 42 1 2.2098 2.9298 5.8620 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592211563.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:37 Heat of formation + Delta-G solvation = -133.865971 kcal Electronic energy + Delta-G solvation = -24183.696271 eV Core-core repulsion = 20742.505535 eV Total energy + Delta-G solvation = -3441.190736 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.25510 -39.31685 -37.75825 -36.25061 -33.81997 -33.67812 -31.44909 -31.36886 -29.70489 -27.17860 -25.07548 -24.16897 -23.42731 -21.97340 -21.17207 -19.14120 -18.65254 -18.09520 -17.09517 -16.65624 -16.28002 -15.86380 -15.35456 -14.77362 -14.58712 -14.12962 -13.87445 -13.79614 -13.26162 -13.09873 -12.92764 -12.65545 -12.53306 -12.26132 -11.99295 -11.92246 -11.54259 -11.43866 -11.34666 -11.04972 -10.92878 -10.87179 -10.62998 -10.55186 -10.28736 -10.14214 -10.03054 -9.57451 -9.03022 -8.54040 -8.41567 -8.37750 -5.99578 -3.98727 2.08146 2.85112 3.26871 3.36215 3.40169 3.70173 3.73468 4.30293 4.43236 4.61196 4.68449 4.96520 5.07166 5.13200 5.21241 5.25536 5.30560 5.34037 5.57607 5.70205 5.76572 5.84460 5.88464 5.99840 6.00739 6.07889 6.16430 6.21540 6.34759 6.39802 6.43270 6.51663 6.56622 6.79534 6.81645 7.14518 7.23846 7.62607 7.78415 8.23948 8.62711 9.18701 9.25567 9.60499 11.13494 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.023310 B = 0.005342 C = 0.004758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.888520 B = 5240.643047 C = 5883.022189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.007 4.007 3 H 0.050 0.950 4 C -0.501 4.501 5 H 0.094 0.906 6 C 0.069 3.931 7 N -0.898 5.898 8 Si 0.883 3.117 9 H -0.279 1.279 10 H -0.268 1.268 11 H -0.296 1.296 12 C 0.536 3.464 13 O -0.528 6.528 14 N -0.734 5.734 15 C 0.198 3.802 16 C -0.179 4.179 17 C -0.130 4.130 18 C -0.121 4.121 19 C -0.118 4.118 20 C -0.108 4.108 21 C -0.081 4.081 22 H 0.111 0.889 23 C 0.473 3.527 24 O -0.488 6.488 25 O -0.520 6.520 26 H 0.057 0.943 27 H 0.030 0.970 28 H 0.047 0.953 29 H 0.263 0.737 30 H 0.390 0.610 31 H 0.074 0.926 32 H 0.055 0.945 33 H 0.083 0.917 34 H 0.061 0.939 35 H 0.097 0.903 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.077 0.923 41 H 0.074 0.926 42 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.456 2.579 22.991 23.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.028 4.028 3 H 0.068 0.932 4 C -0.539 4.539 5 H 0.112 0.888 6 C -0.132 4.132 7 N -0.536 5.536 8 Si 0.714 3.286 9 H -0.206 1.206 10 H -0.193 1.193 11 H -0.224 1.224 12 C 0.325 3.675 13 O -0.403 6.403 14 N -0.387 5.387 15 C 0.112 3.888 16 C -0.236 4.236 17 C -0.168 4.168 18 C -0.159 4.159 19 C -0.156 4.156 20 C -0.146 4.146 21 C -0.101 4.101 22 H 0.129 0.871 23 C 0.314 3.686 24 O -0.374 6.374 25 O -0.332 6.332 26 H 0.076 0.924 27 H 0.049 0.951 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.223 0.777 31 H 0.093 0.907 32 H 0.074 0.926 33 H 0.102 0.898 34 H 0.080 0.920 35 H 0.116 0.884 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.096 0.904 41 H 0.093 0.907 42 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -2.881 1.553 22.436 22.673 hybrid contribution -0.776 2.008 -0.239 2.166 sum -3.657 3.561 22.197 22.776 Atomic orbital electron populations 1.22102 0.97555 1.01356 0.99033 1.19315 0.93026 0.97632 0.92861 0.93195 1.20948 1.31797 1.13944 0.87187 0.88816 1.24976 0.95899 0.96495 0.95821 1.69887 1.45678 1.40240 0.97806 0.86929 0.80667 0.84027 0.77012 1.20611 1.19319 1.22379 1.21070 0.78680 0.84109 0.83672 1.90501 1.37097 1.26350 1.86349 1.46252 1.55229 1.32004 1.05234 1.19925 0.95029 0.91427 0.82426 1.22563 0.94047 1.03907 1.03118 1.21989 1.00447 0.94473 0.99890 1.21620 1.01449 0.99021 0.93818 1.21572 1.01033 0.94419 0.98544 1.21550 1.01827 0.96094 0.95107 1.21405 1.02825 0.87439 0.98405 0.87110 1.23525 0.77679 0.88533 0.78843 1.90774 1.34461 1.76555 1.35618 1.84530 1.72525 1.27461 1.48723 0.92384 0.95092 0.93418 0.92673 0.77673 0.90722 0.92598 0.89770 0.92039 0.88441 0.91599 0.91294 0.91607 0.91390 0.90431 0.90738 0.73366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 8.57 37.16 0.32 -2.70 16 2 C -0.01 -0.16 2.23 -92.92 -0.21 -0.37 16 3 H 0.05 1.22 7.20 -51.93 -0.37 0.84 16 4 C -0.50 -14.74 8.96 -34.44 -0.31 -15.05 16 5 H 0.09 3.12 7.00 -52.49 -0.37 2.75 16 6 C 0.07 2.04 5.45 -17.82 -0.10 1.95 16 7 N -0.90 -28.21 13.96 55.43 0.77 -27.44 16 8 Si 0.88 21.94 24.37 -169.99 -4.14 17.80 16 9 H -0.28 -6.68 6.87 56.52 0.39 -6.29 16 10 H -0.27 -6.29 6.53 56.52 0.37 -5.92 16 11 H -0.30 -7.40 7.11 56.52 0.40 -7.00 16 12 C 0.54 11.87 6.57 -10.99 -0.07 11.80 16 13 O -0.53 -13.22 11.67 5.56 0.06 -13.15 16 14 N -0.73 -12.58 4.09 -47.61 -0.19 -12.77 16 15 C 0.20 2.83 0.40 -131.82 -0.05 2.78 16 16 C -0.18 -2.79 7.39 37.16 0.27 -2.52 16 17 C -0.13 -1.79 4.66 -26.73 -0.12 -1.91 16 18 C -0.12 -1.26 5.65 -26.73 -0.15 -1.41 16 19 C -0.12 -0.95 5.92 -26.73 -0.16 -1.11 16 20 C -0.11 -0.92 4.86 -26.73 -0.13 -1.05 16 21 C -0.08 -0.87 1.99 -91.78 -0.18 -1.05 16 22 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 23 C 0.47 5.41 6.90 36.01 0.25 5.66 16 24 O -0.49 -7.35 13.43 -18.75 -0.25 -7.60 16 25 O -0.52 -4.36 13.33 -39.24 -0.52 -4.88 16 26 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 27 H 0.03 0.52 7.57 -51.93 -0.39 0.13 16 28 H 0.05 1.05 3.27 -51.93 -0.17 0.88 16 29 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 30 H 0.39 6.05 7.22 -40.82 -0.29 5.75 16 31 H 0.07 1.26 5.52 -51.93 -0.29 0.97 16 32 H 0.06 0.71 4.81 -51.93 -0.25 0.46 16 33 H 0.08 1.61 6.17 -51.93 -0.32 1.29 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.10 1.71 6.17 -51.93 -0.32 1.39 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.74 6.43 -51.93 -0.33 0.41 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.08 0.56 8.11 -51.93 -0.42 0.14 16 41 H 0.07 0.67 6.43 -51.93 -0.33 0.33 16 42 H 0.41 1.91 9.10 45.56 0.41 2.32 16 LS Contribution 313.06 15.07 4.72 4.72 Total: -1.00 -35.01 313.06 -5.37 -40.38 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -5.17 Total: 7.94 kcal Atomic # 6 Polarization: -4.34 SS G_CDS: -0.64 Total: -4.99 kcal Atomic # 7 Polarization: -40.79 SS G_CDS: 0.58 Total: -40.21 kcal Atomic # 8 Polarization: -24.93 SS G_CDS: -0.71 Total: -25.64 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.14 Total: 17.80 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -35.01 -5.37 -40.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592211563.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.489 kcal (2) G-P(sol) polarization free energy of solvation -35.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds