Wall clock time and date at job start Tue Mar 31 2020 06:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47126 * 2 1 4 4 C 1.50703 * 109.46747 * 240.00334 * 2 1 3 5 5 H 1.08001 * 120.00037 * 239.99519 * 4 2 1 6 6 C 1.37875 * 120.00214 * 60.00163 * 4 2 1 7 7 N 1.31520 * 119.99609 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00201 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47136 * 90.00100 * 8 6 4 10 10 H 1.48500 * 109.46954 * 210.00202 * 8 6 4 11 11 H 1.48503 * 109.47010 * 330.00034 * 8 6 4 12 12 C 1.50700 * 109.47092 * 120.00550 * 2 1 3 13 13 O 1.21283 * 119.99803 * 119.99700 * 12 2 1 14 14 N 1.34777 * 119.99675 * 300.27576 * 12 2 1 15 15 C 1.46497 * 119.99525 * 179.72583 * 14 12 2 16 16 C 1.53003 * 109.47240 * 59.99970 * 15 14 12 17 17 C 1.52993 * 109.47472 * 299.99541 * 15 14 12 18 18 C 1.53003 * 109.47239 * 300.00430 * 17 15 14 19 19 C 1.52999 * 109.46917 * 299.99641 * 18 17 15 20 20 C 1.53001 * 109.47079 * 59.99718 * 19 18 17 21 21 C 1.52995 * 109.47283 * 300.00338 * 20 19 18 22 22 H 1.09003 * 109.46864 * 299.99800 * 21 20 19 23 23 C 1.50707 * 109.47268 * 179.97438 * 21 20 19 24 24 O 1.20819 * 120.00174 * 239.99915 * 23 21 20 25 25 O 1.34231 * 119.99711 * 59.99476 * 23 21 20 26 26 H 1.09004 * 109.47239 * 299.99568 * 1 2 3 27 27 H 1.09005 * 109.47323 * 59.99789 * 1 2 3 28 28 H 1.09006 * 109.47458 * 179.97438 * 1 2 3 29 29 H 0.97006 * 119.99301 * 180.02562 * 7 6 4 30 30 H 0.97000 * 119.99894 * 359.71837 * 14 12 2 31 31 H 1.08995 * 109.47357 * 59.99994 * 16 15 14 32 32 H 1.09003 * 109.47092 * 179.97438 * 16 15 14 33 33 H 1.09001 * 109.46873 * 299.99483 * 16 15 14 34 34 H 1.09001 * 109.47143 * 60.00209 * 17 15 14 35 35 H 1.09003 * 109.47451 * 180.02562 * 17 15 14 36 36 H 1.08998 * 109.46864 * 59.99957 * 18 17 15 37 37 H 1.09001 * 109.46895 * 179.97438 * 18 17 15 38 38 H 1.09001 * 109.47054 * 180.02562 * 19 18 17 39 39 H 1.09003 * 109.47160 * 299.99861 * 19 18 17 40 40 H 1.09003 * 109.47008 * 60.00050 * 20 19 18 41 41 H 1.09001 * 109.46894 * 179.97438 * 20 19 18 42 42 H 0.96695 * 116.99786 * 180.02562 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2306 5 1 2.6532 -1.5885 -1.1316 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8304 -2.6033 8 14 2.3223 -1.1193 -4.0081 9 1 1.3445 -2.1613 -4.4125 10 1 2.4871 -0.1399 -5.1120 11 1 3.6307 -1.7565 -3.7121 12 6 2.0323 -0.7105 1.2304 13 8 2.7295 -1.6966 1.1190 14 7 1.7021 -0.2534 2.4545 15 6 2.1855 -0.9476 3.6505 16 6 3.7155 -0.9483 3.6565 17 6 1.6749 -2.3898 3.6445 18 6 0.1448 -2.3891 3.6386 19 6 -0.3697 -1.6712 4.8879 20 6 0.1410 -0.2290 4.8940 21 6 1.6710 -0.2297 4.8998 22 1 2.0306 -0.7463 5.7898 23 6 2.1740 1.1909 4.9052 24 8 2.8723 1.5880 4.0027 25 8 1.8461 2.0151 5.9127 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 0.7089 1.1616 -3.4844 30 1 1.1445 0.5353 2.5435 31 1 4.0793 0.0791 3.6609 32 1 4.0751 -1.4645 4.5467 33 1 4.0820 -1.4598 2.7665 34 1 2.0414 -2.9013 2.7545 35 1 2.0341 -2.9062 4.5347 36 1 -0.2148 -1.8727 2.7486 37 1 -0.2189 -3.4167 3.6338 38 1 -1.4597 -1.6711 4.8839 39 1 -0.0100 -2.1878 5.7778 40 1 -0.2186 0.2876 4.0040 41 1 -0.2259 0.2826 5.7838 42 1 2.1922 2.9171 5.8722 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592211564.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:40 Heat of formation + Delta-G solvation = -144.850577 kcal Electronic energy + Delta-G solvation = -24390.826382 eV Core-core repulsion = 20949.159318 eV Total energy + Delta-G solvation = -3441.667064 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.15692 -39.24653 -37.33553 -36.17308 -33.72328 -33.33776 -31.35296 -31.24442 -29.60701 -26.69757 -25.06715 -24.03848 -22.92247 -21.83914 -20.93451 -19.73781 -18.50292 -18.00807 -16.89729 -16.22788 -16.02595 -15.70218 -14.93334 -14.70456 -14.47079 -14.25427 -13.73709 -13.38223 -13.12424 -13.05891 -12.60585 -12.54439 -12.15884 -12.06236 -11.75043 -11.57820 -11.42881 -11.34846 -11.08080 -10.96112 -10.82553 -10.63465 -10.60529 -10.51329 -10.23906 -10.05430 -9.89530 -9.84297 -8.89264 -8.42781 -8.22628 -8.15298 -5.96172 -3.98552 2.16517 2.93084 3.37727 3.43181 3.50392 3.88962 3.95355 4.40201 4.52631 4.62845 4.76764 5.09805 5.18247 5.22488 5.33350 5.37176 5.39727 5.54369 5.65012 5.80262 5.88749 5.97645 5.98747 6.10486 6.19248 6.29291 6.37655 6.50472 6.51328 6.61092 6.69109 6.83355 6.90031 7.02197 7.29643 7.57594 7.83080 7.86366 8.07721 8.25768 8.58116 9.10571 9.41275 9.66803 11.11580 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.022670 B = 0.005268 C = 0.005038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.797190 B = 5314.159832 C = 5556.220349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.028 3.972 3 H 0.050 0.950 4 C -0.495 4.495 5 H 0.074 0.926 6 C 0.056 3.944 7 N -0.898 5.898 8 Si 0.899 3.101 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.273 1.273 12 C 0.527 3.473 13 O -0.544 6.544 14 N -0.726 5.726 15 C 0.197 3.803 16 C -0.178 4.178 17 C -0.128 4.128 18 C -0.121 4.121 19 C -0.114 4.114 20 C -0.111 4.111 21 C -0.080 4.080 22 H 0.116 0.884 23 C 0.473 3.527 24 O -0.488 6.488 25 O -0.520 6.520 26 H 0.009 0.991 27 H 0.091 0.909 28 H 0.030 0.970 29 H 0.259 0.741 30 H 0.390 0.610 31 H 0.075 0.925 32 H 0.047 0.953 33 H 0.084 0.916 34 H 0.096 0.904 35 H 0.062 0.938 36 H 0.071 0.929 37 H 0.061 0.939 38 H 0.066 0.934 39 H 0.062 0.938 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.785 -0.253 18.918 19.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.007 3.993 3 H 0.067 0.933 4 C -0.534 4.534 5 H 0.092 0.908 6 C -0.144 4.144 7 N -0.538 5.538 8 Si 0.727 3.273 9 H -0.208 1.208 10 H -0.214 1.214 11 H -0.198 1.198 12 C 0.317 3.683 13 O -0.421 6.421 14 N -0.380 5.380 15 C 0.110 3.890 16 C -0.235 4.235 17 C -0.166 4.166 18 C -0.159 4.159 19 C -0.152 4.152 20 C -0.149 4.149 21 C -0.100 4.100 22 H 0.134 0.866 23 C 0.314 3.686 24 O -0.373 6.373 25 O -0.333 6.333 26 H 0.028 0.972 27 H 0.110 0.890 28 H 0.049 0.951 29 H 0.069 0.931 30 H 0.225 0.775 31 H 0.094 0.906 32 H 0.066 0.934 33 H 0.103 0.897 34 H 0.114 0.886 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.090 0.910 41 H 0.095 0.905 42 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -2.295 -1.155 18.436 18.614 hybrid contribution 0.277 0.721 -0.720 1.056 sum -2.018 -0.434 17.716 17.836 Atomic orbital electron populations 1.21724 0.96793 0.99603 1.00676 1.18854 0.93937 0.96879 0.89646 0.93258 1.21151 1.30635 1.12609 0.88995 0.90783 1.24956 0.95263 0.95084 0.99078 1.69886 1.37407 1.23141 1.23352 0.86472 0.79424 0.79204 0.82208 1.20762 1.21404 1.19794 1.21736 0.78230 0.84075 0.84212 1.90445 1.38016 1.26990 1.86647 1.46244 1.54989 1.31821 1.04977 1.19935 0.94313 0.91576 0.83151 1.22485 0.94284 1.03929 1.02840 1.21965 0.95531 0.95443 1.03699 1.21539 0.95798 1.00335 0.98233 1.21525 1.00466 0.94472 0.98720 1.21548 0.91507 0.98688 1.03166 1.21429 0.98298 0.88699 1.01553 0.86648 1.23528 0.77550 0.88658 0.78842 1.90774 1.34452 1.76352 1.35769 1.84528 1.72449 1.27561 1.48744 0.97243 0.89006 0.95055 0.93103 0.77543 0.90589 0.93382 0.89706 0.88596 0.91961 0.91057 0.92033 0.91505 0.91896 0.91029 0.90549 0.73404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.03 8.86 37.16 0.33 -2.70 16 2 C 0.03 0.71 2.64 -92.92 -0.25 0.47 16 3 H 0.05 1.35 8.14 -51.93 -0.42 0.92 16 4 C -0.50 -14.27 8.37 -34.44 -0.29 -14.56 16 5 H 0.07 2.24 6.75 -52.49 -0.35 1.89 16 6 C 0.06 1.60 5.30 -17.82 -0.09 1.50 16 7 N -0.90 -25.76 11.32 55.43 0.63 -25.14 16 8 Si 0.90 22.23 29.54 -169.99 -5.02 17.21 16 9 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 10 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 12 C 0.53 12.02 6.57 -10.98 -0.07 11.94 16 13 O -0.54 -13.67 11.67 5.55 0.06 -13.60 16 14 N -0.73 -12.98 3.02 -47.61 -0.14 -13.12 16 15 C 0.20 2.93 0.26 -131.82 -0.03 2.90 16 16 C -0.18 -2.87 8.08 37.16 0.30 -2.57 16 17 C -0.13 -1.83 4.52 -26.73 -0.12 -1.95 16 18 C -0.12 -1.55 5.77 -26.73 -0.15 -1.70 16 19 C -0.11 -1.11 5.92 -26.73 -0.16 -1.27 16 20 C -0.11 -1.12 4.96 -26.73 -0.13 -1.25 16 21 C -0.08 -0.91 1.93 -91.77 -0.18 -1.09 16 22 H 0.12 1.07 8.14 -51.93 -0.42 0.65 16 23 C 0.47 5.76 6.90 36.01 0.25 6.01 16 24 O -0.49 -7.74 13.43 -18.74 -0.25 -7.99 16 25 O -0.52 -4.71 13.33 -39.26 -0.52 -5.24 16 26 H 0.01 0.17 7.55 -51.93 -0.39 -0.22 16 27 H 0.09 2.37 6.07 -51.93 -0.32 2.05 16 28 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 30 H 0.39 6.62 6.05 -40.82 -0.25 6.38 16 31 H 0.08 1.32 5.52 -51.93 -0.29 1.03 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.08 1.65 6.17 -51.93 -0.32 1.33 16 34 H 0.10 1.72 6.17 -51.93 -0.32 1.40 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.07 1.08 7.60 -51.93 -0.39 0.69 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.81 6.86 -51.93 -0.36 0.45 16 41 H 0.08 0.65 8.11 -51.93 -0.42 0.23 16 42 H 0.41 2.17 9.10 45.56 0.41 2.59 16 LS Contribution 323.13 15.07 4.87 4.87 Total: -1.00 -32.71 323.13 -6.49 -39.20 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -5.51 Total: 8.08 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: -0.60 Total: -4.27 kcal Atomic # 7 Polarization: -38.74 SS G_CDS: 0.48 Total: -38.26 kcal Atomic # 8 Polarization: -26.12 SS G_CDS: -0.71 Total: -26.83 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.71 -6.49 -39.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592211564.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.652 kcal (2) G-P(sol) polarization free energy of solvation -32.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds