Wall clock time and date at job start Tue Mar 31 2020 06:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47611 * 2 1 4 4 C 1.50706 * 109.47238 * 239.99389 * 2 1 3 5 5 H 1.07999 * 120.00196 * 240.00405 * 4 2 1 6 6 C 1.37879 * 119.99394 * 60.00273 * 4 2 1 7 7 N 1.31514 * 120.00338 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99426 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47776 * 59.99746 * 8 6 4 10 10 H 1.48503 * 109.46851 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47028 * 299.99350 * 8 6 4 12 12 C 1.50699 * 109.47078 * 119.99719 * 2 1 3 13 13 O 1.21282 * 120.00041 * 120.00051 * 12 2 1 14 14 N 1.34779 * 120.00033 * 300.00110 * 12 2 1 15 15 C 1.46500 * 120.00165 * 179.97438 * 14 12 2 16 16 C 1.53000 * 109.47023 * 300.00061 * 15 14 12 17 17 C 1.53005 * 109.47137 * 59.99409 * 15 14 12 18 18 C 1.53008 * 109.46851 * 60.00413 * 17 15 14 19 19 C 1.52996 * 109.47409 * 59.99614 * 18 17 15 20 20 C 1.52997 * 109.47131 * 300.00374 * 19 18 17 21 21 C 1.52996 * 109.47368 * 179.97438 * 15 14 12 22 22 H 1.09001 * 109.47367 * 180.02562 * 21 15 14 23 23 C 1.50703 * 109.46946 * 59.99917 * 21 15 14 24 24 O 1.20825 * 120.00021 * 0.02562 * 23 21 15 25 25 O 1.34225 * 119.99932 * 180.02562 * 23 21 15 26 26 H 1.09002 * 109.47153 * 300.00488 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00297 * 1 2 3 28 28 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 29 29 H 0.96996 * 119.99730 * 180.02562 * 7 6 4 30 30 H 0.96996 * 119.99850 * 359.97438 * 14 12 2 31 31 H 1.09002 * 109.47398 * 59.99929 * 16 15 14 32 32 H 1.09001 * 109.47194 * 180.02562 * 16 15 14 33 33 H 1.09000 * 109.46968 * 299.99910 * 16 15 14 34 34 H 1.09001 * 109.47420 * 179.97438 * 17 15 14 35 35 H 1.08992 * 109.47199 * 300.00654 * 17 15 14 36 36 H 1.09001 * 109.46630 * 299.99898 * 18 17 15 37 37 H 1.09000 * 109.47188 * 179.97438 * 18 17 15 38 38 H 1.08996 * 109.47452 * 180.02562 * 19 18 17 39 39 H 1.09001 * 109.46997 * 59.99948 * 19 18 17 40 40 H 1.09001 * 109.47289 * 299.99950 * 20 19 18 41 41 H 1.09002 * 109.47153 * 179.97438 * 20 19 18 42 42 H 0.96697 * 117.00491 * 180.02562 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.6532 -1.5887 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9428 0.8295 -2.6034 8 14 2.3214 -1.1206 -4.0078 9 1 1.8259 -2.5205 -4.0076 10 1 1.8270 -0.4202 -5.2204 11 1 3.8063 -1.1211 -4.0081 12 6 2.0323 -0.7103 1.2305 13 8 2.7296 -1.6964 1.1193 14 7 1.7067 -0.2498 2.4546 15 6 2.1945 -0.9407 3.6508 16 6 1.6839 -2.3830 3.6506 17 6 3.7246 -0.9414 3.6510 18 6 4.2352 0.5009 3.6512 19 6 3.7253 1.2224 4.9003 20 6 2.1954 1.2230 4.9001 21 6 1.6851 -0.2190 4.9000 22 1 2.0485 -0.7327 5.7900 23 6 0.1781 -0.2178 4.9000 24 8 -0.4264 -0.7410 3.9941 25 8 -0.4925 0.3644 5.9064 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 0.7082 1.1606 -3.4844 30 1 1.1493 0.5390 2.5435 31 1 2.0472 -2.8970 2.7607 32 1 2.0465 -2.8969 4.5409 33 1 0.5939 -2.3825 3.6504 34 1 4.0876 -1.4550 4.5413 35 1 4.0878 -1.4553 2.7611 36 1 3.8722 1.0149 2.7612 37 1 5.3252 0.5005 3.6518 38 1 4.0887 2.2500 4.9003 39 1 4.0883 0.7083 5.7904 40 1 1.8323 1.7370 4.0101 41 1 1.8321 1.7366 5.7903 42 1 -1.4582 0.3395 5.8629 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592211566.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:42 Heat of formation + Delta-G solvation = -144.598891 kcal Electronic energy + Delta-G solvation = -24378.946303 eV Core-core repulsion = 20937.290152 eV Total energy + Delta-G solvation = -3441.656150 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.15131 -39.23678 -37.34559 -36.16296 -33.69900 -33.34855 -31.34540 -31.23896 -29.60618 -26.69995 -25.03627 -24.03119 -22.91503 -21.82274 -20.93376 -19.76352 -18.48455 -17.99622 -16.88336 -16.22609 -16.05104 -15.67105 -14.95184 -14.73254 -14.45124 -14.15995 -13.69665 -13.54978 -13.10278 -13.06692 -12.57960 -12.44833 -12.14964 -12.12380 -11.75829 -11.50615 -11.45650 -11.31126 -11.08565 -10.92008 -10.81032 -10.67366 -10.59375 -10.53427 -10.14667 -10.08975 -9.88616 -9.83949 -8.88838 -8.42148 -8.22593 -8.14708 -5.95526 -3.98103 2.17569 2.93619 3.40521 3.42636 3.48244 3.87486 3.96673 4.40242 4.52809 4.62805 4.76339 5.09104 5.17907 5.22263 5.33170 5.37544 5.39530 5.54097 5.64505 5.79747 5.88535 5.97177 5.98602 6.10219 6.18687 6.29610 6.38189 6.49840 6.51565 6.61040 6.76304 6.84299 6.98026 7.07008 7.29773 7.59154 7.85666 7.87465 8.08442 8.26963 8.58353 9.10483 9.41305 9.67116 11.12088 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.022546 B = 0.005353 C = 0.004955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.583298 B = 5229.943253 C = 5648.978191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.029 3.971 3 H 0.048 0.952 4 C -0.497 4.497 5 H 0.073 0.927 6 C 0.057 3.943 7 N -0.898 5.898 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.289 1.289 11 H -0.277 1.277 12 C 0.527 3.473 13 O -0.544 6.544 14 N -0.726 5.726 15 C 0.197 3.803 16 C -0.177 4.177 17 C -0.129 4.129 18 C -0.121 4.121 19 C -0.115 4.115 20 C -0.112 4.112 21 C -0.080 4.080 22 H 0.115 0.885 23 C 0.472 3.528 24 O -0.486 6.486 25 O -0.521 6.521 26 H 0.010 0.990 27 H 0.090 0.910 28 H 0.030 0.970 29 H 0.260 0.740 30 H 0.390 0.610 31 H 0.084 0.916 32 H 0.047 0.953 33 H 0.076 0.924 34 H 0.062 0.938 35 H 0.096 0.904 36 H 0.069 0.931 37 H 0.061 0.939 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.711 2.242 18.931 19.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.008 3.992 3 H 0.066 0.934 4 C -0.535 4.535 5 H 0.092 0.908 6 C -0.143 4.143 7 N -0.538 5.538 8 Si 0.728 3.272 9 H -0.203 1.203 10 H -0.215 1.215 11 H -0.203 1.203 12 C 0.317 3.683 13 O -0.421 6.421 14 N -0.380 5.380 15 C 0.110 3.890 16 C -0.235 4.235 17 C -0.167 4.167 18 C -0.159 4.159 19 C -0.152 4.152 20 C -0.149 4.149 21 C -0.100 4.100 22 H 0.133 0.867 23 C 0.313 3.687 24 O -0.372 6.372 25 O -0.333 6.333 26 H 0.029 0.971 27 H 0.108 0.892 28 H 0.049 0.951 29 H 0.070 0.930 30 H 0.225 0.775 31 H 0.103 0.897 32 H 0.066 0.934 33 H 0.094 0.906 34 H 0.081 0.919 35 H 0.114 0.886 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.090 0.910 41 H 0.095 0.905 42 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 1.402 1.489 18.445 18.558 hybrid contribution -0.783 -0.053 -0.713 1.061 sum 0.619 1.436 17.732 17.801 Atomic orbital electron populations 1.21693 0.96589 0.99793 1.00587 1.18845 0.94092 0.96622 0.89601 0.93447 1.21114 1.30722 1.12660 0.89023 0.90847 1.24951 0.95219 0.95100 0.99056 1.69872 1.37228 1.23219 1.23454 0.86530 0.79199 0.79731 0.81778 1.20275 1.21478 1.20272 1.21753 0.78162 0.84151 0.84224 1.90444 1.38239 1.26771 1.86652 1.46246 1.54787 1.32024 1.04976 1.19935 0.93600 0.92281 0.83152 1.22479 1.03121 0.95094 1.02803 1.21973 0.93735 0.97246 1.03724 1.21535 1.00106 0.96050 0.98167 1.21528 0.94060 1.00895 0.98726 1.21545 0.96995 0.93224 1.03161 1.21418 0.86944 1.00062 1.01548 0.86666 1.23523 0.91672 0.74563 0.78915 1.90783 1.70153 1.40745 1.35479 1.84524 1.26539 1.73497 1.48759 0.97067 0.89153 0.95082 0.93044 0.77549 0.89725 0.93413 0.90571 0.91935 0.88581 0.91181 0.91990 0.91495 0.91869 0.91044 0.90536 0.73413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.14 8.87 37.16 0.33 -2.81 16 2 C 0.03 0.75 2.64 -92.92 -0.25 0.51 16 3 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 4 C -0.50 -14.32 8.37 -34.44 -0.29 -14.61 16 5 H 0.07 2.22 6.75 -52.49 -0.35 1.86 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 7 N -0.90 -25.78 11.32 55.43 0.63 -25.15 16 8 Si 0.90 22.26 29.54 -169.99 -5.02 17.24 16 9 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 10 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 C 0.53 12.00 6.57 -10.99 -0.07 11.93 16 13 O -0.54 -13.66 11.67 5.56 0.06 -13.60 16 14 N -0.73 -12.96 3.03 -47.61 -0.14 -13.10 16 15 C 0.20 2.93 0.26 -131.82 -0.03 2.89 16 16 C -0.18 -2.87 8.08 37.16 0.30 -2.57 16 17 C -0.13 -1.83 4.52 -26.72 -0.12 -1.95 16 18 C -0.12 -1.53 5.77 -26.73 -0.15 -1.68 16 19 C -0.11 -1.10 5.92 -26.73 -0.16 -1.26 16 20 C -0.11 -1.11 4.96 -26.75 -0.13 -1.25 16 21 C -0.08 -0.91 1.93 -91.79 -0.18 -1.09 16 22 H 0.12 1.07 8.14 -51.93 -0.42 0.65 16 23 C 0.47 5.76 6.90 36.01 0.25 6.01 16 24 O -0.49 -7.72 13.44 -18.75 -0.25 -7.97 16 25 O -0.52 -4.73 13.32 -39.24 -0.52 -5.25 16 26 H 0.01 0.23 7.56 -51.93 -0.39 -0.17 16 27 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 28 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 30 H 0.39 6.61 6.06 -40.82 -0.25 6.36 16 31 H 0.08 1.65 6.17 -51.93 -0.32 1.33 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.08 1.33 5.52 -51.93 -0.29 1.04 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.10 1.72 6.17 -51.93 -0.32 1.40 16 36 H 0.07 1.05 7.60 -51.93 -0.39 0.65 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.79 6.86 -51.93 -0.36 0.44 16 41 H 0.08 0.65 8.11 -51.93 -0.42 0.22 16 42 H 0.41 2.20 9.10 45.56 0.41 2.61 16 LS Contribution 323.15 15.07 4.87 4.87 Total: -1.00 -32.75 323.15 -6.49 -39.24 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -5.51 Total: 8.08 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: -0.60 Total: -4.36 kcal Atomic # 7 Polarization: -38.74 SS G_CDS: 0.48 Total: -38.26 kcal Atomic # 8 Polarization: -26.11 SS G_CDS: -0.71 Total: -26.82 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.75 -6.49 -39.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592211566.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.356 kcal (2) G-P(sol) polarization free energy of solvation -32.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds