Wall clock time and date at job start Tue Mar 31 2020 06:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.47025 * 2 1 4 4 C 1.52997 * 109.47101 * 119.99900 * 2 1 3 5 5 C 1.50700 * 109.47262 * 294.68650 * 4 2 1 6 6 H 1.07995 * 119.99847 * 356.62631 * 5 4 2 7 7 C 1.37874 * 119.99906 * 176.62508 * 5 4 2 8 8 N 1.31511 * 120.00167 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 120.00010 * 0.02562 * 7 5 4 10 10 H 1.48495 * 109.47393 * 89.99982 * 9 7 5 11 11 H 1.48508 * 109.47161 * 210.00103 * 9 7 5 12 12 H 1.48496 * 109.47141 * 329.99791 * 9 7 5 13 13 N 1.46902 * 109.46950 * 240.00029 * 2 1 3 14 14 C 1.47991 * 110.99865 * 183.78348 * 13 2 1 15 15 C 1.55678 * 104.53944 * 213.12574 * 14 13 2 16 16 H 1.08991 * 113.36482 * 158.63058 * 15 14 13 17 17 C 1.51616 * 106.73379 * 282.01304 * 15 14 13 18 18 O 1.42520 * 111.18989 * 159.34330 * 17 15 14 19 19 C 1.43222 * 113.02674 * 297.42010 * 18 17 15 20 20 C 1.52954 * 108.13978 * 65.06047 * 19 18 17 21 21 C 1.51367 * 110.94321 * 302.78634 * 20 19 18 22 22 C 1.50699 * 109.55472 * 171.26685 * 21 20 19 23 23 O 1.20825 * 119.99764 * 239.30114 * 22 21 20 24 24 O 1.34224 * 119.99885 * 59.30231 * 22 21 20 25 25 C 1.45859 * 111.08881 * 63.33480 * 13 2 1 26 26 H 1.09001 * 109.47031 * 300.00388 * 1 2 3 27 27 H 1.08998 * 109.47171 * 59.99771 * 1 2 3 28 28 H 1.08998 * 109.47421 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47251 * 54.68864 * 4 2 1 30 30 H 1.08999 * 109.46959 * 174.68432 * 4 2 1 31 31 H 0.97001 * 120.00604 * 180.02562 * 8 7 5 32 32 H 1.08994 * 110.42218 * 94.36117 * 14 13 2 33 33 H 1.09003 * 110.42404 * 331.88989 * 14 13 2 34 34 H 1.08998 * 108.60932 * 39.17278 * 17 15 14 35 35 H 1.08996 * 109.43872 * 280.05313 * 17 15 14 36 36 H 1.09006 * 109.72642 * 305.40010 * 19 18 17 37 37 H 1.08997 * 109.73277 * 184.72138 * 19 18 17 38 38 H 1.08994 * 109.17935 * 182.41243 * 20 19 18 39 39 H 1.08998 * 109.18260 * 63.16357 * 20 19 18 40 40 H 0.96703 * 117.00266 * 180.02562 * 24 22 21 41 41 H 1.08999 * 109.37121 * 3.41188 * 25 13 2 42 42 H 1.09002 * 109.71581 * 242.61534 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 1.6479 0.0611 2.4762 6 1 1.1387 1.0078 2.3730 7 6 1.9395 -0.4319 3.7303 8 7 1.5969 0.2505 4.8011 9 14 2.8210 -2.0692 3.9087 10 1 4.2883 -1.8417 3.9291 11 1 2.4033 -2.7208 5.1761 12 1 2.4720 -2.9466 2.7627 13 7 2.0196 -0.6925 -1.1995 14 6 3.4961 -0.7917 -1.1890 15 6 3.9046 -0.7020 -2.6885 16 1 4.9391 -0.3929 -2.8370 17 6 3.6340 -2.0641 -3.2969 18 8 3.5145 -1.9806 -4.7146 19 6 2.4130 -1.1686 -5.1371 20 6 2.6851 0.2703 -4.6955 21 6 2.8938 0.3464 -3.1982 22 6 3.3682 1.7271 -2.8246 23 8 4.4303 1.8706 -2.2666 24 8 2.6109 2.7975 -3.1117 25 6 1.6187 0.0115 -2.4124 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 1.6010 -1.7178 1.2981 30 1 3.1258 -0.8044 1.2029 31 1 1.8023 -0.0961 5.6835 32 1 3.8102 -1.7457 -0.7657 33 1 3.9290 0.0358 -0.6267 34 1 2.7042 -2.4523 -2.8812 35 1 4.4495 -2.7422 -3.0454 36 1 1.4930 -1.5274 -4.6754 37 1 2.3208 -1.2092 -6.2224 38 1 1.8364 0.8961 -4.9711 39 1 3.5786 0.6371 -5.2008 40 1 2.9572 3.6625 -2.8529 41 1 1.0954 0.9286 -2.1418 42 1 0.9686 -0.6271 -3.0104 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592470186.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:13 Heat of formation + Delta-G solvation = -131.982113 kcal Electronic energy + Delta-G solvation = -24299.428520 eV Core-core repulsion = 20858.319474 eV Total energy + Delta-G solvation = -3441.109046 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.68273 -39.37426 -37.67373 -36.22728 -34.65328 -32.87216 -32.20528 -30.01968 -28.41488 -27.31875 -25.55427 -24.47669 -22.48946 -22.34914 -21.54211 -19.28355 -19.10994 -18.01294 -17.33470 -16.97749 -16.36223 -15.93111 -15.43530 -15.16145 -14.82343 -14.55494 -14.10659 -13.71835 -13.45646 -13.30896 -13.10248 -12.96293 -12.39184 -12.29311 -12.10126 -11.71413 -11.62552 -11.55250 -11.37969 -11.14002 -10.91273 -10.86531 -10.70541 -10.61271 -10.29937 -10.03841 -9.81736 -9.64816 -9.59971 -9.19094 -8.54079 -7.98177 -6.05273 -4.03206 2.10628 2.83241 3.31252 3.38744 3.43195 3.76747 4.05196 4.23667 4.45143 4.47267 4.54417 4.77036 4.94427 5.07088 5.17446 5.28570 5.29350 5.33900 5.41884 5.53267 5.59904 5.71941 5.75641 5.79831 5.88458 5.93473 6.03505 6.13375 6.15268 6.22155 6.39495 6.55408 6.68097 6.97596 7.01908 7.09347 7.22172 7.41259 7.56134 7.78579 7.82508 8.51360 8.98003 9.57057 11.07889 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.021495 B = 0.005394 C = 0.004977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.310256 B = 5189.255285 C = 5624.955578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.090 3.910 3 H 0.032 0.968 4 C -0.005 4.005 5 C -0.517 4.517 6 H 0.072 0.928 7 C 0.069 3.931 8 N -0.903 5.903 9 Si 0.877 3.123 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.263 1.263 13 N -0.525 5.525 14 C 0.045 3.955 15 C -0.114 4.114 16 H 0.103 0.897 17 C 0.068 3.932 18 O -0.380 6.380 19 C 0.062 3.938 20 C -0.135 4.135 21 C -0.063 4.063 22 C 0.487 3.513 23 O -0.504 6.504 24 O -0.514 6.514 25 C 0.052 3.948 26 H 0.072 0.928 27 H 0.033 0.967 28 H 0.055 0.945 29 H 0.027 0.973 30 H 0.011 0.989 31 H 0.263 0.737 32 H 0.087 0.913 33 H 0.061 0.939 34 H 0.071 0.929 35 H 0.097 0.903 36 H 0.061 0.939 37 H 0.098 0.902 38 H 0.087 0.913 39 H 0.075 0.925 40 H 0.410 0.590 41 H 0.068 0.932 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.158 -0.630 -20.725 20.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.017 4.017 3 H 0.050 0.950 4 C -0.043 4.043 5 C -0.555 4.555 6 H 0.090 0.910 7 C -0.133 4.133 8 N -0.542 5.542 9 Si 0.704 3.296 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.187 1.187 13 N -0.249 5.249 14 C -0.082 4.082 15 C -0.133 4.133 16 H 0.121 0.879 17 C -0.009 4.009 18 O -0.299 6.299 19 C -0.015 4.015 20 C -0.173 4.173 21 C -0.065 4.065 22 C 0.329 3.671 23 O -0.391 6.391 24 O -0.326 6.326 25 C -0.076 4.076 26 H 0.091 0.909 27 H 0.052 0.948 28 H 0.075 0.925 29 H 0.045 0.955 30 H 0.030 0.970 31 H 0.073 0.927 32 H 0.105 0.895 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.116 0.884 36 H 0.080 0.920 37 H 0.117 0.883 38 H 0.105 0.895 39 H 0.094 0.906 40 H 0.269 0.731 41 H 0.086 0.914 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.189 -1.569 -20.577 20.671 hybrid contribution 0.953 0.980 0.776 1.572 sum 2.142 -0.589 -19.801 19.925 Atomic orbital electron populations 1.21760 0.94541 1.01826 1.00700 1.21844 0.95553 0.95049 0.89302 0.95031 1.19654 0.95736 0.96756 0.92133 1.21048 1.38442 1.07030 0.89007 0.91037 1.24975 0.95307 0.97149 0.95832 1.69905 1.47636 1.38743 0.97951 0.86817 0.80219 0.84839 0.77701 1.20383 1.21413 1.18720 1.63480 1.09705 1.49734 1.02005 1.23277 0.88186 1.02929 0.93807 1.22692 0.99313 0.94791 0.96551 0.87856 1.22367 1.03191 0.94995 0.80326 1.88004 1.50047 1.69759 1.22057 1.22649 0.90006 0.88552 1.00306 1.21673 1.03801 0.99659 0.92209 1.21104 0.99065 0.88465 0.97852 1.23288 0.81883 0.87103 0.74871 1.90725 1.23269 1.86616 1.38487 1.84496 1.52510 1.18613 1.76960 1.22575 0.94121 0.98838 0.92084 0.90892 0.94782 0.92542 0.95488 0.97044 0.92740 0.89486 0.92047 0.91101 0.88441 0.92042 0.88344 0.89482 0.90647 0.73141 0.91389 0.89495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.40 8.93 37.16 0.33 -2.07 16 2 C 0.09 1.78 1.62 -67.71 -0.11 1.67 16 3 H 0.03 0.68 8.12 -51.93 -0.42 0.26 16 4 C -0.01 -0.12 3.46 -27.88 -0.10 -0.22 16 5 C -0.52 -14.52 8.90 -34.44 -0.31 -14.83 16 6 H 0.07 2.16 7.45 -52.49 -0.39 1.77 16 7 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 8 N -0.90 -27.80 13.96 55.43 0.77 -27.02 16 9 Si 0.88 21.81 27.54 -169.99 -4.68 17.13 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.26 -6.28 6.45 56.52 0.36 -5.92 16 13 N -0.52 -8.66 4.56 -224.52 -1.02 -9.68 16 14 C 0.05 0.73 4.11 -1.80 -0.01 0.73 16 15 C -0.11 -1.52 2.83 -89.22 -0.25 -1.77 16 16 H 0.10 1.43 7.54 -51.93 -0.39 1.04 16 17 C 0.07 0.80 5.72 36.46 0.21 1.01 16 18 O -0.38 -4.46 10.80 -35.23 -0.38 -4.84 16 19 C 0.06 0.56 6.69 37.13 0.25 0.81 16 20 C -0.14 -1.30 4.78 -27.58 -0.13 -1.44 16 21 C -0.06 -0.78 0.62 -155.56 -0.10 -0.88 16 22 C 0.49 6.76 6.46 36.01 0.23 7.00 16 23 O -0.50 -8.55 15.70 -18.75 -0.29 -8.84 16 24 O -0.51 -5.68 13.10 -39.24 -0.51 -6.20 16 25 C 0.05 0.71 4.61 -4.14 -0.02 0.69 16 26 H 0.07 1.48 7.04 -51.93 -0.37 1.12 16 27 H 0.03 0.53 6.70 -51.93 -0.35 0.18 16 28 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.03 0.65 6.96 -51.93 -0.36 0.29 16 30 H 0.01 0.27 6.28 -51.93 -0.33 -0.05 16 31 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 32 H 0.09 1.38 7.93 -51.93 -0.41 0.96 16 33 H 0.06 1.15 6.82 -51.93 -0.35 0.80 16 34 H 0.07 0.88 7.13 -51.93 -0.37 0.51 16 35 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.06 0.53 6.74 -51.93 -0.35 0.18 16 37 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 40 H 0.41 2.97 9.10 45.56 0.41 3.38 16 41 H 0.07 0.97 5.95 -51.93 -0.31 0.66 16 42 H 0.09 1.03 6.47 -51.93 -0.34 0.69 16 LS Contribution 319.71 15.07 4.82 4.82 Total: -1.00 -32.97 319.71 -7.00 -39.97 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -5.61 Total: 2.07 kcal Atomic # 6 Polarization: -7.31 SS G_CDS: -0.10 Total: -7.40 kcal Atomic # 7 Polarization: -36.45 SS G_CDS: -0.25 Total: -36.70 kcal Atomic # 8 Polarization: -18.69 SS G_CDS: -1.19 Total: -19.88 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.68 Total: 17.13 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.97 -7.00 -39.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592470186.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.013 kcal (2) G-P(sol) polarization free energy of solvation -32.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds