Wall clock time and date at job start Tue Mar 31 2020 06:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 110.41507 * 2 1 4 4 C 1.55127 * 110.49183 * 237.65307 * 2 1 3 5 5 C 1.55158 * 101.48622 * 278.44919 * 4 2 1 6 6 C 1.54319 * 102.94144 * 324.34032 * 5 4 2 7 7 H 1.09007 * 109.87793 * 262.77055 * 6 5 4 8 8 C 1.50699 * 109.88423 * 141.61006 * 6 5 4 9 9 O 1.20830 * 120.00035 * 242.18982 * 8 6 5 10 10 O 1.34231 * 120.00386 * 62.18252 * 8 6 5 11 11 N 1.47021 * 107.27574 * 22.18705 * 6 5 4 12 12 C 1.34777 * 125.64819 * 181.02426 * 11 6 5 13 13 O 1.21279 * 119.99633 * 180.02562 * 12 11 6 14 14 C 1.50701 * 120.00115 * 0.02562 * 12 11 6 15 15 C 1.52997 * 109.47212 * 180.02562 * 14 12 11 16 16 C 1.52992 * 109.47482 * 180.02562 * 15 14 12 17 17 C 1.52997 * 109.47482 * 179.97438 * 16 15 14 18 18 C 1.50701 * 109.47212 * 179.97438 * 17 16 15 19 19 H 1.07998 * 120.00129 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99861 * 179.97438 * 18 17 16 21 21 N 1.31510 * 119.99913 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99734 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47432 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.46890 * 120.00210 * 22 20 18 25 25 H 1.48501 * 109.47062 * 240.00257 * 22 20 18 26 26 H 1.09003 * 109.46911 * 297.70503 * 1 2 3 27 27 H 1.09004 * 109.47120 * 57.69774 * 1 2 3 28 28 H 1.08991 * 109.47245 * 177.70106 * 1 2 3 29 29 H 1.09005 * 111.19334 * 160.35169 * 4 2 1 30 30 H 1.08998 * 110.94326 * 36.44678 * 4 2 1 31 31 H 1.08999 * 110.71999 * 205.97132 * 5 4 2 32 32 H 1.09003 * 110.71348 * 82.70358 * 5 4 2 33 33 H 0.96695 * 117.00702 * 180.02562 * 10 8 6 34 34 H 1.09002 * 109.47060 * 60.00000 * 14 12 11 35 35 H 1.09001 * 109.46927 * 300.00196 * 14 12 11 36 36 H 1.09002 * 109.47153 * 60.00002 * 15 14 12 37 37 H 1.09001 * 109.46832 * 300.00193 * 15 14 12 38 38 H 1.09002 * 109.47103 * 59.99753 * 16 15 14 39 39 H 1.08998 * 109.46862 * 300.00565 * 16 15 14 40 40 H 1.09002 * 109.47153 * 59.99783 * 17 16 15 41 41 H 1.09001 * 109.46832 * 299.99974 * 17 16 15 42 42 H 0.97002 * 119.99768 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9102 1.0215 0.0000 4 6 2.0731 -0.7775 -1.2276 5 6 1.9720 -2.2448 -0.7335 6 6 2.3091 -2.1279 0.7679 7 1 3.3602 -2.3660 0.9313 8 6 1.4385 -3.0661 1.5633 9 8 0.6693 -2.6263 2.3849 10 8 1.5172 -4.3905 1.3591 11 7 2.0431 -0.7385 1.1682 12 6 2.2316 -0.2263 2.4005 13 8 1.9767 0.9393 2.6182 14 6 2.7590 -1.1019 3.5079 15 6 2.8783 -0.2815 4.7938 16 6 3.4143 -1.1701 5.9179 17 6 3.5343 -0.3496 7.2036 18 6 4.0617 -1.2252 8.3110 19 1 4.2890 -2.2630 8.1171 20 6 4.2550 -0.7010 9.5716 21 7 3.9786 0.5629 9.8076 22 14 4.9094 -1.7861 10.9440 23 1 5.1400 -3.1577 10.4234 24 1 6.1892 -1.2273 11.4493 25 1 3.9199 -1.8359 12.0502 26 1 -0.3633 0.4778 0.9099 27 1 -0.3633 0.5492 -0.8687 28 1 -0.3633 -1.0267 -0.0412 29 1 3.1076 -0.5070 -1.4392 30 1 1.4424 -0.6152 -2.1017 31 1 2.7001 -2.8748 -1.2444 32 1 0.9618 -2.6299 -0.8731 33 1 0.9388 -4.9522 1.8928 34 1 3.7399 -1.4875 3.2302 35 1 2.0741 -1.9341 3.6705 36 1 1.8972 0.1039 5.0713 37 1 3.5630 0.5510 4.6314 38 1 4.3956 -1.5551 5.6401 39 1 2.7301 -2.0029 6.0803 40 1 2.5533 0.0358 7.4816 41 1 4.2188 0.4829 7.0408 42 1 4.1142 0.9315 10.6945 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594217155.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:45 Heat of formation + Delta-G solvation = -145.193451 kcal Electronic energy + Delta-G solvation = -22808.715824 eV Core-core repulsion = 19367.033892 eV Total energy + Delta-G solvation = -3441.681932 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.34317 -39.56000 -37.83122 -36.41096 -34.82208 -32.75438 -32.13136 -31.60633 -29.50023 -27.48010 -25.71585 -23.79674 -22.94913 -21.81620 -20.91700 -19.92401 -19.01425 -18.43134 -17.32663 -17.27808 -16.13851 -16.01095 -15.66561 -15.19320 -14.85503 -14.38640 -14.10670 -13.73931 -13.59122 -13.50973 -12.96780 -12.65714 -12.60450 -12.40290 -12.31390 -12.05684 -11.82643 -11.55221 -11.49030 -11.26183 -11.08928 -10.93299 -10.77383 -10.45303 -10.40865 -10.33254 -9.79055 -9.55541 -9.17726 -9.01420 -8.92701 -8.27086 -5.91658 -3.93892 1.83487 2.26679 2.77221 2.99351 3.35447 3.42311 3.46548 3.92900 3.95299 4.41559 4.51904 4.63510 4.70586 4.82498 4.94575 5.09050 5.19038 5.22554 5.35133 5.36260 5.42991 5.43526 5.49301 5.58648 5.72897 5.90489 6.01659 6.11786 6.16680 6.25091 6.38573 6.61110 6.90807 7.07019 7.23107 7.28726 7.58852 7.78721 7.95295 8.10254 8.19393 8.52252 9.13931 9.69426 11.19776 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.027208 B = 0.003308 C = 0.003075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.875559 B = 8461.263930 C = 9103.283714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.128 3.872 3 H 0.094 0.906 4 C -0.128 4.128 5 C -0.116 4.116 6 C 0.142 3.858 7 H 0.119 0.881 8 C 0.460 3.540 9 O -0.491 6.491 10 O -0.514 6.514 11 N -0.608 5.608 12 C 0.544 3.456 13 O -0.524 6.524 14 C -0.146 4.146 15 C -0.101 4.101 16 C -0.109 4.109 17 C 0.020 3.980 18 C -0.518 4.518 19 H 0.054 0.946 20 C 0.054 3.946 21 N -0.895 5.895 22 Si 0.891 3.109 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.284 1.284 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.054 0.946 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.082 0.918 33 H 0.413 0.587 34 H 0.085 0.915 35 H 0.100 0.900 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.046 0.954 39 H 0.045 0.955 40 H 0.016 0.984 41 H 0.016 0.984 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.654 -8.362 -27.401 29.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.025 3.975 3 H 0.112 0.888 4 C -0.166 4.166 5 C -0.154 4.154 6 C 0.035 3.965 7 H 0.137 0.863 8 C 0.300 3.700 9 O -0.377 6.377 10 O -0.326 6.326 11 N -0.345 5.345 12 C 0.334 3.666 13 O -0.398 6.398 14 C -0.186 4.186 15 C -0.139 4.139 16 C -0.147 4.147 17 C -0.017 4.017 18 C -0.557 4.557 19 H 0.073 0.927 20 C -0.146 4.146 21 N -0.535 5.535 22 Si 0.719 3.281 23 H -0.198 1.198 24 H -0.211 1.211 25 H -0.211 1.211 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.073 0.927 29 H 0.102 0.898 30 H 0.109 0.891 31 H 0.117 0.883 32 H 0.101 0.899 33 H 0.273 0.727 34 H 0.103 0.897 35 H 0.118 0.882 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.034 0.966 41 H 0.034 0.966 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.737 -7.164 -27.028 28.360 hybrid contribution -0.129 -1.074 1.299 1.691 sum -4.866 -8.238 -25.729 27.451 Atomic orbital electron populations 1.22084 0.94670 1.02074 1.02792 1.21914 0.94441 0.97194 0.83947 0.88818 1.22920 1.02673 0.93645 0.97400 1.22600 1.03730 0.98494 0.90555 1.21150 0.98975 0.81526 0.94815 0.86335 1.23943 0.82320 0.82032 0.81740 1.90789 1.36599 1.77596 1.32723 1.84490 1.64495 1.18891 1.64751 1.48606 1.66859 1.08399 1.10626 1.20757 0.76215 0.88259 0.81322 1.90705 1.50614 1.17620 1.80892 1.22029 1.01925 1.00112 0.94515 1.21432 1.02328 0.98114 0.92000 1.21636 0.98914 0.98216 0.95908 1.19101 0.97185 0.95101 0.90346 1.21324 1.42956 0.96668 0.94739 0.92734 1.25046 0.95819 0.94997 0.98765 1.69989 1.49036 1.12732 1.21710 0.86555 0.78566 0.80755 0.82224 1.19795 1.21059 1.21060 0.91663 0.91490 0.92724 0.89761 0.89127 0.88319 0.89944 0.72735 0.89704 0.88154 0.91762 0.91854 0.93570 0.93574 0.96558 0.96551 0.93126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 9.52 37.16 0.35 -1.14 16 2 C 0.13 1.20 3.35 -66.30 -0.22 0.98 16 3 H 0.09 0.98 8.03 -51.93 -0.42 0.56 16 4 C -0.13 -0.68 6.58 -24.46 -0.16 -0.84 16 5 C -0.12 -0.59 6.06 -24.90 -0.15 -0.74 16 6 C 0.14 1.19 3.16 -68.11 -0.22 0.97 16 7 H 0.12 0.79 8.14 -51.93 -0.42 0.36 16 8 C 0.46 4.54 6.64 36.01 0.24 4.77 16 9 O -0.49 -6.85 14.33 -18.75 -0.27 -7.12 16 10 O -0.51 -3.53 13.40 -39.26 -0.53 -4.06 16 11 N -0.61 -7.14 2.49 -156.77 -0.39 -7.53 16 12 C 0.54 8.72 7.13 -10.98 -0.08 8.64 16 13 O -0.52 -10.34 16.24 5.56 0.09 -10.25 16 14 C -0.15 -2.33 4.56 -27.88 -0.13 -2.45 16 15 C -0.10 -2.00 4.50 -26.74 -0.12 -2.12 16 16 C -0.11 -2.41 5.15 -26.74 -0.14 -2.55 16 17 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 18 C -0.52 -15.38 9.11 -34.44 -0.31 -15.69 16 19 H 0.05 1.56 7.74 -52.49 -0.41 1.15 16 20 C 0.05 1.63 5.46 -17.82 -0.10 1.53 16 21 N -0.90 -28.08 13.29 55.43 0.74 -27.34 16 22 Si 0.89 22.32 29.54 -169.99 -5.02 17.30 16 23 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 26 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.50 7.36 -51.93 -0.38 0.12 16 29 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.09 0.33 8.05 -51.93 -0.42 -0.09 16 31 H 0.10 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.08 0.42 7.39 -51.93 -0.38 0.04 16 33 H 0.41 1.48 9.10 45.56 0.41 1.90 16 34 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.10 1.61 5.29 -51.93 -0.27 1.33 16 36 H 0.06 1.37 8.10 -51.93 -0.42 0.95 16 37 H 0.06 1.29 8.10 -51.93 -0.42 0.87 16 38 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 39 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 345.70 15.07 5.21 5.21 Total: -1.00 -37.43 345.70 -7.41 -44.84 By element: Atomic # 1 Polarization: 3.26 SS G_CDS: -6.07 Total: -2.81 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: -1.17 Total: -8.23 kcal Atomic # 7 Polarization: -35.22 SS G_CDS: 0.35 Total: -34.87 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: -0.70 Total: -21.43 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -37.43 -7.41 -44.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594217155.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.350 kcal (2) G-P(sol) polarization free energy of solvation -37.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds