Wall clock time and date at job start Tue Mar 31 2020 06:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.46973 * 2 1 4 4 C 1.53000 * 109.46907 * 240.00366 * 2 1 3 5 5 C 1.52997 * 109.47191 * 180.02562 * 4 2 1 6 6 C 1.52995 * 109.47183 * 59.99399 * 5 4 2 7 7 H 1.08999 * 109.47287 * 60.00601 * 6 5 4 8 8 C 1.50708 * 109.47129 * 180.02562 * 6 5 4 9 9 O 1.21291 * 119.99754 * 100.28660 * 8 6 5 10 10 N 1.34772 * 119.99881 * 280.29072 * 8 6 5 11 11 C 1.37107 * 120.00075 * 186.55791 * 10 8 6 12 12 H 1.08001 * 119.99777 * 322.70030 * 11 10 8 13 13 C 1.38942 * 120.00223 * 142.69767 * 11 10 8 14 14 N 1.31416 * 120.00053 * 157.21055 * 13 11 10 15 15 Si 1.86802 * 119.99982 * 337.21612 * 13 11 10 16 16 H 1.48499 * 109.47141 * 95.22448 * 15 13 11 17 17 H 1.48508 * 109.46952 * 215.22092 * 15 13 11 18 18 H 1.48494 * 109.47288 * 335.22279 * 15 13 11 19 19 C 1.46494 * 120.00384 * 6.55368 * 10 8 6 20 20 C 1.50698 * 109.47244 * 93.41506 * 19 10 8 21 21 O 1.20829 * 120.00107 * 0.02562 * 20 19 10 22 22 O 1.34229 * 120.00160 * 180.02562 * 20 19 10 23 23 C 1.53000 * 109.47548 * 300.00383 * 6 5 4 24 24 C 1.52994 * 109.47063 * 120.00436 * 2 1 3 25 25 H 1.08998 * 109.46816 * 299.99570 * 24 2 1 26 26 C 1.52999 * 109.47247 * 59.99560 * 24 2 1 27 27 H 1.08998 * 109.46954 * 300.00078 * 1 2 3 28 28 H 1.09007 * 109.47070 * 59.99316 * 1 2 3 29 29 H 1.08997 * 109.47339 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47133 * 300.00141 * 4 2 1 31 31 H 1.08998 * 109.47572 * 60.00188 * 4 2 1 32 32 H 1.09011 * 109.47020 * 300.00008 * 5 4 2 33 33 H 1.09003 * 109.47610 * 179.97438 * 5 4 2 34 34 H 0.96998 * 119.99754 * 180.02562 * 14 13 11 35 35 H 1.09007 * 109.46987 * 333.41818 * 19 10 8 36 36 H 1.09002 * 109.47744 * 213.41739 * 19 10 8 37 37 H 0.96711 * 117.00015 * 180.02562 * 22 20 19 38 38 H 1.08996 * 109.47391 * 180.02562 * 23 6 5 39 39 H 1.09004 * 109.46779 * 299.99683 * 23 6 5 40 40 H 1.09008 * 109.47032 * 180.02562 * 26 24 2 41 41 H 1.08996 * 109.47521 * 299.99978 * 26 24 2 42 42 H 1.09003 * 109.46758 * 60.00430 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5699 -0.7218 -1.2490 6 6 4.0795 -1.4433 0.0002 7 1 3.7158 -2.4709 0.0000 8 6 5.5865 -1.4434 0.0007 9 8 6.1927 -0.6422 0.6804 10 7 6.2606 -2.3335 -0.7540 11 6 7.6249 -2.4242 -0.6527 12 1 8.2162 -1.5320 -0.5083 13 6 8.2468 -3.6639 -0.7356 14 7 9.5110 -3.7427 -1.0859 15 14 7.2860 -5.2186 -0.3493 16 1 6.7581 -5.8003 -1.6095 17 1 8.1807 -6.2017 0.3130 18 1 6.1556 -4.8898 0.5558 19 6 5.5357 -3.2042 -1.6827 20 6 5.5008 -2.5651 -3.0470 21 8 6.0278 -1.4925 -3.2255 22 8 4.8842 -3.1873 -4.0641 23 6 3.5695 -0.7222 1.2495 24 6 2.0400 -0.7213 1.2491 25 1 1.6767 -0.2075 2.1391 26 6 1.5299 -2.1638 1.2491 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5140 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.6766 -1.7488 -1.2494 31 1 1.6767 -0.2073 -2.1393 32 1 3.9337 0.3059 -1.2488 33 1 3.9333 -1.2360 -2.1388 34 1 9.9450 -4.6082 -1.1442 35 1 4.5169 -3.3501 -1.3237 36 1 6.0403 -4.1683 -1.7460 37 1 4.8883 -2.7384 -4.9207 38 1 3.9329 -1.2360 2.1394 39 1 3.9333 0.3054 1.2497 40 1 1.8929 -2.6775 2.1394 41 1 0.4400 -2.1638 1.2492 42 1 1.8933 -2.6776 0.3591 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594293118.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:19 Heat of formation + Delta-G solvation = -130.801460 kcal Electronic energy + Delta-G solvation = -24420.351465 eV Core-core repulsion = 20979.293617 eV Total energy + Delta-G solvation = -3441.057849 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.40884 -39.39053 -37.93778 -35.70930 -34.79532 -32.83092 -31.93364 -31.60695 -28.05213 -27.66474 -26.37261 -24.58698 -22.24954 -21.78012 -21.60335 -18.99589 -18.21014 -17.71233 -17.29497 -16.58926 -16.05473 -15.87714 -15.26879 -14.97967 -14.36809 -14.05691 -13.90531 -13.71519 -13.28252 -13.03798 -12.76981 -12.59171 -12.44859 -12.33732 -12.19589 -11.90781 -11.83002 -11.51131 -11.16731 -11.05914 -10.93432 -10.88711 -10.64980 -10.53590 -10.27831 -10.09440 -9.97708 -9.95240 -9.76589 -9.12880 -8.52287 -7.91135 -6.43759 -4.01004 2.70660 2.93337 3.12261 3.16653 3.22056 3.81423 4.05530 4.29074 4.69560 4.76440 4.78642 4.98183 5.18667 5.26058 5.30682 5.36146 5.40944 5.45382 5.50828 5.60868 5.66530 5.70376 5.73237 5.83350 5.85482 5.91887 5.96100 6.03270 6.09764 6.16211 6.27370 6.38297 6.39562 6.44864 6.59181 6.68670 6.90490 7.45250 8.23680 8.35236 8.45131 8.89950 9.24149 9.64967 10.68484 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.019839 B = 0.006503 C = 0.005902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.992596 B = 4304.740090 C = 4743.062460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.088 4.088 3 H 0.070 0.930 4 C -0.113 4.113 5 C -0.109 4.109 6 C -0.110 4.110 7 H 0.084 0.916 8 C 0.487 3.513 9 O -0.546 6.546 10 N -0.454 5.454 11 C -0.313 4.313 12 H 0.108 0.892 13 C 0.059 3.941 14 N -0.857 5.857 15 Si 0.857 3.143 16 H -0.271 1.271 17 H -0.280 1.280 18 H -0.258 1.258 19 C 0.098 3.902 20 C 0.456 3.544 21 O -0.485 6.485 22 O -0.528 6.528 23 C -0.092 4.092 24 C -0.086 4.086 25 H 0.069 0.931 26 C -0.154 4.154 27 H 0.051 0.949 28 H 0.050 0.950 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.059 0.941 34 H 0.274 0.726 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.400 0.600 38 H 0.065 0.935 39 H 0.072 0.928 40 H 0.053 0.947 41 H 0.054 0.946 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.254 0.005 -1.216 18.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.107 4.107 3 H 0.088 0.912 4 C -0.150 4.150 5 C -0.147 4.147 6 C -0.132 4.132 7 H 0.102 0.898 8 C 0.276 3.724 9 O -0.425 6.425 10 N -0.176 5.176 11 C -0.440 4.440 12 H 0.126 0.874 13 C -0.147 4.147 14 N -0.492 5.492 15 Si 0.683 3.317 16 H -0.198 1.198 17 H -0.206 1.206 18 H -0.182 1.182 19 C -0.028 4.028 20 C 0.295 3.705 21 O -0.370 6.370 22 O -0.340 6.340 23 C -0.130 4.130 24 C -0.104 4.104 25 H 0.087 0.913 26 C -0.211 4.211 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.125 0.875 36 H 0.123 0.877 37 H 0.258 0.742 38 H 0.084 0.916 39 H 0.091 0.909 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -17.569 0.432 -0.541 17.582 hybrid contribution -0.188 -0.790 -0.648 1.039 sum -17.756 -0.358 -1.190 17.800 Atomic orbital electron populations 1.21885 0.95607 1.01744 1.01225 1.21152 0.94978 0.99617 0.94907 0.91193 1.21630 0.95169 1.00825 0.97369 1.21548 0.95204 1.01540 0.96446 1.21413 0.93876 1.00756 0.97124 0.89820 1.20279 0.88420 0.83053 0.80659 1.90556 1.70158 1.38181 1.43650 1.43376 1.07320 1.34935 1.32009 1.19040 0.78774 0.95533 1.50632 0.87415 1.25347 0.95585 0.97885 0.95909 1.69780 1.11795 1.26032 1.41622 0.87251 0.81227 0.83907 0.79278 1.19829 1.20611 1.18218 1.21552 1.00067 0.96232 0.84958 1.24502 0.74536 0.84169 0.87259 1.90732 1.40900 1.21784 1.83593 1.84578 1.72692 1.54522 1.22185 1.21328 0.93477 1.01660 0.96492 1.21134 0.95539 0.96208 0.97528 0.91263 1.22016 1.00548 0.96464 1.02070 0.92948 0.93056 0.92435 0.91637 0.92101 0.91235 0.92241 0.91505 0.87526 0.87719 0.74176 0.91587 0.90897 0.92804 0.92724 0.92128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 8.84 37.16 0.33 -0.99 16 2 C -0.09 -0.97 2.50 -90.62 -0.23 -1.20 16 3 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 4 C -0.11 -1.33 4.93 -26.73 -0.13 -1.46 16 5 C -0.11 -1.70 5.04 -26.74 -0.13 -1.84 16 6 C -0.11 -1.89 1.42 -91.77 -0.13 -2.02 16 7 H 0.08 1.29 4.85 -51.93 -0.25 1.04 16 8 C 0.49 11.36 6.79 -10.98 -0.07 11.29 16 9 O -0.55 -14.81 15.87 5.55 0.09 -14.72 16 10 N -0.45 -11.08 1.68 -116.09 -0.20 -11.27 16 11 C -0.31 -8.98 9.33 -14.93 -0.14 -9.11 16 12 H 0.11 3.54 7.85 -52.49 -0.41 3.13 16 13 C 0.06 1.62 5.31 -17.47 -0.09 1.53 16 14 N -0.86 -24.87 13.96 55.50 0.77 -24.09 16 15 Si 0.86 19.52 25.07 -169.99 -4.26 15.26 16 16 H -0.27 -5.70 6.66 56.52 0.38 -5.32 16 17 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 19 C 0.10 1.98 4.49 -5.20 -0.02 1.96 16 20 C 0.46 8.86 6.27 36.00 0.23 9.08 16 21 O -0.49 -11.16 16.66 -18.75 -0.31 -11.47 16 22 O -0.53 -7.78 13.42 -39.25 -0.53 -8.30 16 23 C -0.09 -1.42 4.19 -26.76 -0.11 -1.53 16 24 C -0.09 -1.01 2.72 -90.65 -0.25 -1.25 16 25 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 26 C -0.15 -1.64 8.14 37.16 0.30 -1.34 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.43 8.14 -51.92 -0.42 0.01 16 29 H 0.06 0.49 6.43 -51.93 -0.33 0.15 16 30 H 0.07 0.71 6.43 -51.93 -0.33 0.38 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 1.18 8.14 -51.92 -0.42 0.76 16 33 H 0.06 0.97 4.54 -51.93 -0.24 0.74 16 34 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 35 H 0.11 1.72 5.73 -51.92 -0.30 1.42 16 36 H 0.11 2.19 3.12 -51.93 -0.16 2.03 16 37 H 0.40 4.06 9.10 45.56 0.41 4.47 16 38 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.07 1.23 7.90 -51.93 -0.41 0.82 16 40 H 0.05 0.57 8.14 -51.92 -0.42 0.15 16 41 H 0.05 0.50 6.43 -51.93 -0.33 0.16 16 42 H 0.06 0.66 4.81 -51.93 -0.25 0.41 16 LS Contribution 318.15 15.07 4.79 4.79 Total: -1.00 -33.74 318.15 -5.24 -38.98 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -5.15 Total: 7.72 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: -0.46 Total: 3.11 kcal Atomic # 7 Polarization: -35.94 SS G_CDS: 0.58 Total: -35.36 kcal Atomic # 8 Polarization: -33.74 SS G_CDS: -0.75 Total: -34.50 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -4.26 Total: 15.26 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -33.74 -5.24 -38.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594293118.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.823 kcal (2) G-P(sol) polarization free energy of solvation -33.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds