Wall clock time and date at job start Tue Mar 31 2020 06:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 110.44021 * 2 1 4 4 C 1.54270 * 110.48405 * 237.31777 * 2 1 3 5 5 C 1.54091 * 106.61922 * 217.60456 * 4 2 1 6 6 C 1.54263 * 106.49268 * 0.17294 * 5 4 2 7 7 H 1.09003 * 110.48556 * 264.70301 * 6 5 4 8 8 C 1.52997 * 110.48465 * 142.19848 * 6 5 4 9 9 C 1.50698 * 109.47355 * 68.24049 * 8 6 5 10 10 O 1.21295 * 120.00002 * 357.31923 * 9 8 6 11 11 N 1.34777 * 120.00035 * 177.59804 * 9 8 6 12 12 C 1.37099 * 120.00071 * 5.17744 * 11 9 8 13 13 H 1.07998 * 119.99900 * 320.17330 * 12 11 9 14 14 C 1.38948 * 119.99799 * 140.17784 * 12 11 9 15 15 N 1.31416 * 119.99915 * 163.51757 * 14 12 11 16 16 Si 1.86800 * 120.00207 * 343.51101 * 14 12 11 17 17 H 1.48503 * 109.47062 * 95.49505 * 16 14 12 18 18 H 1.48501 * 109.47041 * 215.49310 * 16 14 12 19 19 H 1.48501 * 109.47217 * 335.49459 * 16 14 12 20 20 C 1.46507 * 119.99929 * 185.17761 * 11 9 8 21 21 C 1.53003 * 109.46889 * 89.99854 * 20 11 9 22 22 C 1.50700 * 109.46670 * 179.97438 * 21 20 11 23 23 O 1.20820 * 120.00283 * 0.02562 * 22 21 20 24 24 O 1.34231 * 119.99913 * 180.02562 * 22 21 20 25 25 C 1.54888 * 110.48248 * 122.54493 * 2 1 3 26 26 H 1.09000 * 109.46983 * 297.45892 * 1 2 3 27 27 H 1.09003 * 109.47100 * 57.45480 * 1 2 3 28 28 H 1.08993 * 109.47603 * 177.45514 * 1 2 3 29 29 H 1.08998 * 110.03209 * 336.99514 * 4 2 1 30 30 H 1.08998 * 110.03301 * 98.38080 * 4 2 1 31 31 H 1.08999 * 110.15552 * 240.87661 * 5 4 2 32 32 H 1.09005 * 110.00506 * 119.38387 * 5 4 2 33 33 H 1.09002 * 109.47540 * 308.23666 * 8 6 5 34 34 H 1.09009 * 109.47326 * 188.23983 * 8 6 5 35 35 H 0.97000 * 120.00008 * 180.02562 * 15 14 12 36 36 H 1.08998 * 109.46996 * 209.99660 * 20 11 9 37 37 H 1.08994 * 109.46682 * 329.99963 * 20 11 9 38 38 H 1.08998 * 109.47143 * 299.99716 * 21 20 11 39 39 H 1.09003 * 109.47011 * 60.00065 * 21 20 11 40 40 H 0.96700 * 117.00412 * 180.02562 * 24 22 21 41 41 H 1.08991 * 110.75963 * 38.30597 * 25 2 1 42 42 H 1.09005 * 110.91209 * 275.00092 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9107 1.0214 0.0000 4 6 2.0699 -0.7804 -1.2164 5 6 3.3199 -1.5406 -0.7328 6 6 3.4906 -1.1971 0.7614 7 1 4.1903 -0.3705 0.8853 8 6 3.9690 -2.4233 1.5414 9 6 5.3788 -2.7617 1.1302 10 8 5.9279 -2.1184 0.2608 11 7 6.0275 -3.7825 1.7247 12 6 5.3710 -4.5797 2.6265 13 1 4.6817 -4.1414 3.3330 14 6 5.5924 -5.9514 2.6313 15 7 5.2346 -6.6711 3.6711 16 14 6.3985 -6.7726 1.1599 17 1 7.8574 -6.9046 1.4044 18 1 5.8065 -8.1196 0.9589 19 1 6.1727 -5.9466 -0.0533 20 6 7.4344 -4.0404 1.4074 21 6 8.3267 -3.2510 2.3673 22 6 9.7738 -3.5168 2.0412 23 8 10.0618 -4.2608 1.1339 24 8 10.7428 -2.9269 2.7587 25 6 2.0720 -0.7806 1.2231 26 1 -0.3633 0.4739 0.9119 27 1 -0.3633 0.5529 -0.8663 28 1 -0.3634 -1.0266 -0.0456 29 1 1.3175 -1.4842 -1.5723 30 1 2.3403 -0.0883 -2.0138 31 1 4.1968 -1.2163 -1.2931 32 1 3.1741 -2.6139 -0.8550 33 1 3.3151 -3.2686 1.3266 34 1 3.9441 -2.2071 2.6095 35 1 5.3895 -7.6286 3.6746 36 1 7.6411 -5.1055 1.5120 37 1 7.6385 -3.7296 0.3828 38 1 8.1200 -2.1859 2.2626 39 1 8.1225 -3.5618 3.3919 40 1 11.6560 -3.1277 2.5120 41 1 1.4580 -1.6583 1.4242 42 1 2.1250 -0.1383 2.1022 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594301612.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:39 Heat of formation + Delta-G solvation = -148.014165 kcal Electronic energy + Delta-G solvation = -23062.706312 eV Core-core repulsion = 19620.902064 eV Total energy + Delta-G solvation = -3441.804248 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.04094 -39.22203 -37.86699 -35.97404 -35.11502 -32.48349 -32.06556 -30.85394 -29.22115 -26.97960 -25.06301 -24.69579 -23.25765 -20.88030 -19.83645 -19.61247 -18.75581 -17.92222 -16.81432 -16.35424 -16.30150 -15.80984 -15.55381 -14.95431 -14.46776 -13.88047 -13.84799 -13.42604 -13.19409 -13.10746 -12.90549 -12.76022 -12.57100 -12.15413 -11.86129 -11.73583 -11.42946 -11.30099 -11.04531 -10.85494 -10.71824 -10.56374 -10.44965 -10.36297 -10.31777 -10.16371 -10.07489 -9.97669 -9.86229 -9.24690 -8.59816 -7.88328 -6.51666 -4.18925 2.49141 3.09403 3.21416 3.24582 3.31798 3.72007 4.10121 4.38145 4.80693 4.87415 4.91913 4.98908 5.33956 5.45966 5.48503 5.55895 5.66975 5.68740 5.77836 5.79617 5.88845 5.92346 5.98960 6.05330 6.10281 6.12864 6.18825 6.26132 6.32585 6.43170 6.46037 6.52782 6.57706 6.61902 6.71499 6.81705 6.92591 7.30051 8.02051 8.12532 8.18102 8.89403 9.27915 9.61080 10.58238 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.016835 B = 0.005008 C = 0.004298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.835816 B = 5589.363527 C = 6513.185034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.098 4.098 3 H 0.069 0.931 4 C -0.121 4.121 5 C -0.112 4.112 6 C -0.074 4.074 7 H 0.074 0.926 8 C -0.112 4.112 9 C 0.487 3.513 10 O -0.592 6.592 11 N -0.471 5.471 12 C -0.347 4.347 13 H 0.108 0.892 14 C 0.069 3.931 15 N -0.863 5.863 16 Si 0.874 3.126 17 H -0.271 1.271 18 H -0.288 1.288 19 H -0.261 1.261 20 C 0.114 3.886 21 C -0.123 4.123 22 C 0.484 3.516 23 O -0.520 6.520 24 O -0.520 6.520 25 C -0.116 4.116 26 H 0.051 0.949 27 H 0.049 0.951 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.059 0.941 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.276 0.724 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.106 0.894 39 H 0.115 0.885 40 H 0.403 0.597 41 H 0.068 0.932 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.017 9.175 -2.562 9.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.116 4.116 3 H 0.088 0.912 4 C -0.159 4.159 5 C -0.149 4.149 6 C -0.093 4.093 7 H 0.092 0.908 8 C -0.151 4.151 9 C 0.278 3.722 10 O -0.476 6.476 11 N -0.192 5.192 12 C -0.474 4.474 13 H 0.125 0.875 14 C -0.139 4.139 15 N -0.498 5.498 16 Si 0.702 3.298 17 H -0.197 1.197 18 H -0.215 1.215 19 H -0.185 1.185 20 C -0.010 4.010 21 C -0.162 4.162 22 C 0.326 3.674 23 O -0.408 6.408 24 O -0.332 6.332 25 C -0.154 4.154 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.109 0.891 34 H 0.101 0.899 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.098 0.902 38 H 0.124 0.876 39 H 0.133 0.867 40 H 0.261 0.739 41 H 0.087 0.913 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.108 9.163 -3.034 9.880 hybrid contribution 1.121 -0.941 -0.627 1.592 sum -0.987 8.222 -3.661 9.054 Atomic orbital electron populations 1.21807 0.95503 1.01652 1.01070 1.21944 0.94920 0.99140 0.95608 0.91220 1.22291 0.97779 0.98623 0.97168 1.22151 0.97007 0.99811 0.95950 1.21730 0.95468 0.97379 0.94678 0.90759 1.21461 0.94653 0.98220 1.00815 1.20607 0.88142 0.81932 0.81559 1.90540 1.69768 1.54523 1.32754 1.43743 1.06889 1.28837 1.39749 1.19086 1.26872 0.88358 1.13095 0.87494 1.25343 0.95953 0.96409 0.96177 1.69702 1.45037 1.07713 1.27323 0.86969 0.79253 0.79142 0.84478 1.19746 1.21511 1.18481 1.21367 0.82633 0.98898 0.98055 1.21779 0.85649 1.04225 1.04509 1.23740 0.89071 0.76053 0.78505 1.90698 1.84334 1.35402 1.30354 1.84581 1.19783 1.68588 1.60209 1.22643 0.96312 0.99596 0.96851 0.92941 0.93178 0.92647 0.92254 0.92599 0.91197 0.92259 0.89146 0.89874 0.91407 0.91063 0.90152 0.87630 0.86697 0.73876 0.91289 0.91965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.14 37.16 0.34 -1.10 16 2 C -0.10 -1.15 3.46 -88.96 -0.31 -1.46 16 3 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 4 C -0.12 -1.55 6.38 -25.50 -0.16 -1.72 16 5 C -0.11 -1.77 5.46 -25.50 -0.14 -1.91 16 6 C -0.07 -1.17 2.46 -88.96 -0.22 -1.39 16 7 H 0.07 1.24 8.00 -51.93 -0.42 0.83 16 8 C -0.11 -2.04 3.77 -27.89 -0.11 -2.15 16 9 C 0.49 10.66 7.44 -10.99 -0.08 10.58 16 10 O -0.59 -13.82 14.37 5.54 0.08 -13.74 16 11 N -0.47 -10.85 2.16 -114.81 -0.25 -11.10 16 12 C -0.35 -8.58 9.10 -14.93 -0.14 -8.72 16 13 H 0.11 2.72 7.25 -52.49 -0.38 2.34 16 14 C 0.07 1.77 5.38 -17.47 -0.09 1.68 16 15 N -0.86 -23.23 13.96 55.50 0.77 -22.46 16 16 Si 0.87 20.95 24.76 -169.99 -4.21 16.74 16 17 H -0.27 -6.50 6.77 56.52 0.38 -6.12 16 18 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.26 -6.41 7.06 56.52 0.40 -6.01 16 20 C 0.11 2.53 3.46 -4.04 -0.01 2.52 16 21 C -0.12 -2.27 6.14 -27.88 -0.17 -2.44 16 22 C 0.48 8.45 8.33 36.01 0.30 8.75 16 23 O -0.52 -10.61 16.74 -18.75 -0.31 -10.93 16 24 O -0.52 -7.02 13.42 -39.26 -0.53 -7.55 16 25 C -0.12 -1.52 5.75 -24.74 -0.14 -1.66 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.56 8.08 -51.93 -0.42 0.14 16 29 H 0.06 0.72 7.79 -51.93 -0.40 0.32 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 1.22 7.63 -51.93 -0.40 0.83 16 32 H 0.06 1.00 7.74 -51.93 -0.40 0.60 16 33 H 0.09 1.68 7.96 -51.93 -0.41 1.27 16 34 H 0.08 1.45 7.71 -51.92 -0.40 1.05 16 35 H 0.28 7.01 8.31 -40.82 -0.34 6.67 16 36 H 0.07 1.69 3.08 -51.93 -0.16 1.53 16 37 H 0.08 1.85 7.31 -51.93 -0.38 1.47 16 38 H 0.11 1.84 8.14 -51.93 -0.42 1.42 16 39 H 0.11 2.08 8.14 -51.93 -0.42 1.66 16 40 H 0.40 3.49 9.10 45.56 0.41 3.91 16 41 H 0.07 0.90 7.97 -51.93 -0.41 0.48 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 337.55 15.07 5.09 5.09 Total: -1.00 -29.77 337.55 -6.18 -35.95 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -5.89 Total: 7.01 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: -0.93 Total: 0.98 kcal Atomic # 7 Polarization: -34.08 SS G_CDS: 0.53 Total: -33.55 kcal Atomic # 8 Polarization: -31.46 SS G_CDS: -0.76 Total: -32.22 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.21 Total: 16.74 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.77 -6.18 -35.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594301612.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.063 kcal (2) G-P(sol) polarization free energy of solvation -29.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds