Wall clock time and date at job start Tue Mar 31 2020 06:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 110.01807 * 2 1 4 4 C 1.54270 * 110.07275 * 121.41539 * 2 1 3 5 5 C 1.54890 * 104.19364 * 142.91990 * 4 2 1 6 6 C 1.54888 * 102.74871 * 322.05724 * 5 4 2 7 7 H 1.09004 * 110.59936 * 279.21070 * 6 5 4 8 8 C 1.53001 * 110.48827 * 156.62527 * 6 5 4 9 9 C 1.50696 * 109.47166 * 70.22275 * 8 6 5 10 10 O 1.21297 * 120.00286 * 0.02562 * 9 8 6 11 11 N 1.34773 * 120.00266 * 180.02562 * 9 8 6 12 12 C 1.37105 * 119.99626 * 359.97438 * 11 9 8 13 13 H 1.07996 * 120.00156 * 322.25760 * 12 11 9 14 14 C 1.38952 * 119.99669 * 142.25278 * 12 11 9 15 15 N 1.31407 * 120.00092 * 157.64284 * 14 12 11 16 16 Si 1.86800 * 120.00252 * 337.64180 * 14 12 11 17 17 H 1.48501 * 109.47254 * 95.70486 * 16 14 12 18 18 H 1.48500 * 109.47545 * 215.70506 * 16 14 12 19 19 H 1.48503 * 109.47082 * 335.70377 * 16 14 12 20 20 C 1.46496 * 120.00786 * 180.02562 * 11 9 8 21 21 C 1.53002 * 109.47224 * 83.61815 * 20 11 9 22 22 C 1.50696 * 109.47218 * 180.02562 * 21 20 11 23 23 O 1.20825 * 120.00086 * 0.02562 * 22 21 20 24 24 O 1.34234 * 120.00169 * 180.02562 * 22 21 20 25 25 C 1.53868 * 110.03469 * 238.60549 * 2 1 3 26 26 H 1.09001 * 109.46875 * 181.39222 * 1 2 3 27 27 H 1.09003 * 109.46987 * 301.39248 * 1 2 3 28 28 H 1.08997 * 109.46803 * 61.39459 * 1 2 3 29 29 H 1.09003 * 110.48348 * 261.59667 * 4 2 1 30 30 H 1.08995 * 110.48648 * 24.24039 * 4 2 1 31 31 H 1.09001 * 110.75062 * 203.74431 * 5 4 2 32 32 H 1.08997 * 110.76196 * 80.37433 * 5 4 2 33 33 H 1.09006 * 109.46576 * 310.22440 * 8 6 5 34 34 H 1.08995 * 109.47050 * 190.22762 * 8 6 5 35 35 H 0.97002 * 120.00380 * 179.97438 * 15 14 12 36 36 H 1.09007 * 109.46874 * 323.62316 * 20 11 9 37 37 H 1.08999 * 109.47529 * 203.62134 * 20 11 9 38 38 H 1.08999 * 109.47128 * 300.00565 * 21 20 11 39 39 H 1.08996 * 109.47379 * 60.00143 * 21 20 11 40 40 H 0.96700 * 117.00058 * 179.97438 * 24 22 21 41 41 H 1.09009 * 110.03027 * 121.38144 * 25 2 1 42 42 H 1.09004 * 110.07072 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0241 0.0000 4 6 2.0595 -0.7553 1.2366 5 6 3.3150 -1.4995 0.7182 6 6 2.8886 -1.9396 -0.7043 7 1 2.2795 -2.8425 -0.6600 8 6 4.1183 -2.1675 -1.5856 9 6 4.8460 -3.4033 -1.1226 10 8 4.4224 -4.0395 -0.1807 11 7 5.9674 -3.8017 -1.7550 12 6 6.4459 -3.0829 -2.8200 13 1 5.7584 -2.6426 -3.5269 14 6 7.8155 -2.9210 -2.9897 15 7 8.3016 -2.6395 -4.1777 16 14 8.9657 -3.1034 -1.5292 17 1 9.5068 -4.4859 -1.4949 18 1 10.0856 -2.1366 -1.6572 19 1 8.2191 -2.8328 -0.2743 20 6 6.6746 -5.0033 -1.3054 21 6 6.0240 -6.2407 -1.9272 22 6 6.7511 -7.4768 -1.4642 23 8 7.6927 -7.3783 -0.7135 24 8 6.3526 -8.6873 -1.8858 25 6 2.0571 -0.7530 -1.2339 26 1 -0.3633 -1.0274 0.0250 27 1 -0.3633 0.5353 0.8773 28 1 -0.3633 0.4920 -0.9022 29 1 2.3305 -0.0533 2.0252 30 1 1.3160 -1.4663 1.5966 31 1 3.5347 -2.3666 1.3412 32 1 4.1719 -0.8273 0.6740 33 1 4.7823 -1.3061 -1.5126 34 1 3.8041 -2.2974 -2.6211 35 1 9.2577 -2.5261 -4.2961 36 1 6.6204 -5.0716 -0.2188 37 1 7.7184 -4.9476 -1.6143 38 1 4.9802 -6.2963 -1.6183 39 1 6.0782 -6.1725 -3.0137 40 1 6.8502 -9.4506 -1.5620 41 1 2.6861 -0.0943 -1.8329 42 1 1.2234 -1.1192 -1.8331 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594301613.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:42 Heat of formation + Delta-G solvation = -149.380213 kcal Electronic energy + Delta-G solvation = -23077.783793 eV Core-core repulsion = 19635.920309 eV Total energy + Delta-G solvation = -3441.863484 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.02309 -39.21168 -37.89770 -35.95455 -35.08140 -32.48618 -32.05262 -30.84048 -29.25276 -26.89680 -25.04786 -24.69734 -23.28382 -20.87028 -20.11099 -19.19157 -18.88173 -17.91966 -16.98311 -16.33409 -16.23336 -15.56642 -15.27313 -14.95548 -14.69032 -14.23303 -13.67671 -13.29676 -13.16754 -13.08546 -12.91474 -12.70260 -12.54432 -12.17233 -11.95369 -11.76795 -11.37029 -11.27717 -10.98936 -10.84316 -10.73059 -10.49722 -10.47602 -10.30521 -10.29455 -10.24879 -10.06015 -9.98429 -9.93318 -9.25201 -8.57482 -7.90415 -6.55292 -4.16002 2.50944 3.09067 3.22524 3.26188 3.31867 3.72876 4.10446 4.39923 4.81505 4.88425 4.93112 4.96213 5.36252 5.47351 5.52623 5.55570 5.61268 5.73098 5.77521 5.78639 5.90081 5.94299 6.04156 6.07077 6.09557 6.16048 6.20743 6.29777 6.34219 6.43198 6.46126 6.51506 6.58501 6.62329 6.72893 6.79186 6.93688 7.26727 8.00627 8.13874 8.18742 8.89677 9.28860 9.62467 10.54757 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.016117 B = 0.005117 C = 0.004325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.908708 B = 5471.037835 C = 6472.435542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.097 4.097 3 H 0.066 0.934 4 C -0.120 4.120 5 C -0.115 4.115 6 C -0.073 4.073 7 H 0.075 0.925 8 C -0.111 4.111 9 C 0.483 3.517 10 O -0.594 6.594 11 N -0.467 5.467 12 C -0.350 4.350 13 H 0.107 0.893 14 C 0.071 3.929 15 N -0.855 5.855 16 Si 0.866 3.134 17 H -0.269 1.269 18 H -0.286 1.286 19 H -0.260 1.260 20 C 0.116 3.884 21 C -0.123 4.123 22 C 0.484 3.516 23 O -0.520 6.520 24 O -0.520 6.520 25 C -0.118 4.118 26 H 0.054 0.946 27 H 0.049 0.951 28 H 0.051 0.949 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.060 0.940 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.276 0.724 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.108 0.892 39 H 0.113 0.887 40 H 0.403 0.597 41 H 0.064 0.936 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.023 -0.226 4.153 9.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.116 4.116 3 H 0.085 0.915 4 C -0.158 4.158 5 C -0.153 4.153 6 C -0.092 4.092 7 H 0.094 0.906 8 C -0.151 4.151 9 C 0.274 3.726 10 O -0.479 6.479 11 N -0.187 5.187 12 C -0.477 4.477 13 H 0.124 0.876 14 C -0.137 4.137 15 N -0.490 5.490 16 Si 0.692 3.308 17 H -0.196 1.196 18 H -0.213 1.213 19 H -0.184 1.184 20 C -0.008 4.008 21 C -0.162 4.162 22 C 0.327 3.673 23 O -0.408 6.408 24 O -0.332 6.332 25 C -0.156 4.156 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.079 0.921 33 H 0.107 0.893 34 H 0.101 0.899 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.096 0.904 38 H 0.126 0.874 39 H 0.131 0.869 40 H 0.261 0.739 41 H 0.083 0.917 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.017 -0.103 4.528 10.091 hybrid contribution 1.267 -0.562 0.612 1.515 sum -7.750 -0.665 5.139 9.323 Atomic orbital electron populations 1.21883 0.95585 1.01571 1.00999 1.21738 0.95114 0.99248 0.95496 0.91505 1.22455 0.98006 0.98630 0.96710 1.22521 0.96474 0.99779 0.96502 1.21730 0.95460 0.97507 0.94537 0.90608 1.21445 0.96173 0.97495 0.99988 1.20585 0.82891 0.86652 0.82518 1.90532 1.68993 1.58481 1.29875 1.43766 1.24022 1.21040 1.29919 1.19065 0.92200 1.33682 1.02735 0.87558 1.25325 0.97306 0.95039 0.96038 1.69764 1.14340 1.43929 1.20952 0.87090 0.81004 0.78178 0.84485 1.19573 1.21286 1.18390 1.21382 0.96284 0.83881 0.99257 1.21778 1.01386 0.88682 1.04342 1.23751 0.81885 0.84656 0.77025 1.90699 1.28436 1.87209 1.34499 1.84584 1.60945 1.17291 1.70361 1.22319 0.99173 0.97154 0.96935 0.92685 0.93214 0.93022 0.92438 0.91926 0.90635 0.92090 0.89267 0.89918 0.91385 0.90738 0.90412 0.87407 0.86904 0.73908 0.91686 0.92082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 8.85 37.16 0.33 -1.13 16 2 C -0.10 -1.16 3.50 -89.50 -0.31 -1.47 16 3 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 4 C -0.12 -1.54 6.36 -25.07 -0.16 -1.70 16 5 C -0.12 -1.81 5.75 -24.74 -0.14 -1.96 16 6 C -0.07 -1.17 2.45 -88.96 -0.22 -1.39 16 7 H 0.08 1.29 7.90 -51.93 -0.41 0.88 16 8 C -0.11 -2.04 3.75 -27.88 -0.10 -2.14 16 9 C 0.48 10.54 7.40 -10.99 -0.08 10.46 16 10 O -0.59 -13.76 14.42 5.54 0.08 -13.68 16 11 N -0.47 -10.74 2.18 -114.81 -0.25 -10.99 16 12 C -0.35 -8.65 9.05 -14.93 -0.14 -8.79 16 13 H 0.11 2.70 7.23 -52.49 -0.38 2.32 16 14 C 0.07 1.83 5.26 -17.47 -0.09 1.74 16 15 N -0.86 -22.92 13.96 55.50 0.77 -22.14 16 16 Si 0.87 20.59 25.06 -169.99 -4.26 16.33 16 17 H -0.27 -6.45 6.69 56.52 0.38 -6.07 16 18 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.26 -6.31 7.11 56.52 0.40 -5.90 16 20 C 0.12 2.57 3.22 -4.04 -0.01 2.56 16 21 C -0.12 -2.30 6.09 -27.88 -0.17 -2.47 16 22 C 0.48 8.51 8.33 36.00 0.30 8.81 16 23 O -0.52 -10.64 16.74 -18.75 -0.31 -10.96 16 24 O -0.52 -7.09 13.42 -39.27 -0.53 -7.62 16 25 C -0.12 -1.55 6.03 -25.62 -0.15 -1.71 16 26 H 0.05 0.57 8.12 -51.93 -0.42 0.15 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.78 7.84 -51.93 -0.41 0.37 16 31 H 0.07 1.34 7.29 -51.93 -0.38 0.96 16 32 H 0.06 0.98 7.97 -51.93 -0.41 0.56 16 33 H 0.09 1.66 7.97 -51.93 -0.41 1.24 16 34 H 0.08 1.46 7.67 -51.93 -0.40 1.06 16 35 H 0.28 6.97 8.31 -40.82 -0.34 6.63 16 36 H 0.07 1.71 7.58 -51.92 -0.39 1.32 16 37 H 0.08 1.84 3.61 -51.93 -0.19 1.65 16 38 H 0.11 1.94 8.14 -51.93 -0.42 1.52 16 39 H 0.11 2.05 8.14 -51.93 -0.42 1.62 16 40 H 0.40 3.53 9.10 45.56 0.41 3.95 16 41 H 0.06 0.85 7.84 -51.92 -0.41 0.44 16 42 H 0.06 0.75 7.67 -51.93 -0.40 0.35 16 LS Contribution 337.66 15.07 5.09 5.09 Total: -1.00 -29.49 337.66 -6.25 -35.74 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -5.89 Total: 7.42 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: -0.95 Total: 0.81 kcal Atomic # 7 Polarization: -33.66 SS G_CDS: 0.52 Total: -33.14 kcal Atomic # 8 Polarization: -31.50 SS G_CDS: -0.76 Total: -32.26 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -4.26 Total: 16.33 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.49 -6.25 -35.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594301613.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.643 kcal (2) G-P(sol) polarization free energy of solvation -29.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds