Wall clock time and date at job start Tue Mar 31 2020 06:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 110.81272 * 2 1 4 4 C 1.54959 * 110.76596 * 123.29330 * 2 1 3 5 5 C 1.54263 * 104.15895 * 156.22560 * 4 2 1 6 6 C 1.53872 * 106.63901 * 336.44305 * 5 4 2 7 7 H 1.08998 * 110.02952 * 119.31285 * 6 5 4 8 8 C 1.53000 * 110.03258 * 240.68979 * 6 5 4 9 9 C 1.50698 * 109.47424 * 293.54821 * 8 6 5 10 10 O 1.21288 * 120.00214 * 0.02562 * 9 8 6 11 11 N 1.34777 * 119.99697 * 180.02562 * 9 8 6 12 12 C 1.37095 * 120.00568 * 359.97438 * 11 9 8 13 13 H 1.07997 * 119.99516 * 326.02148 * 12 11 9 14 14 C 1.38944 * 120.00145 * 146.01764 * 12 11 9 15 15 N 1.31411 * 120.00245 * 337.80671 * 14 12 11 16 16 Si 1.86802 * 120.00156 * 157.80597 * 14 12 11 17 17 H 1.48503 * 109.46703 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47415 * 120.00020 * 16 14 12 19 19 H 1.48504 * 109.47091 * 240.00115 * 16 14 12 20 20 C 1.46500 * 119.99586 * 180.02562 * 11 9 8 21 21 C 1.53003 * 109.47393 * 84.53816 * 20 11 9 22 22 C 1.50698 * 109.47148 * 179.97438 * 21 20 11 23 23 O 1.20829 * 120.00047 * 0.02562 * 22 21 20 24 24 O 1.34231 * 120.00026 * 180.02562 * 22 21 20 25 25 C 1.54264 * 106.59872 * 359.97438 * 6 5 4 26 26 H 1.09007 * 109.46853 * 183.33798 * 1 2 3 27 27 H 1.09002 * 109.46953 * 303.33242 * 1 2 3 28 28 H 1.08993 * 109.47278 * 63.33666 * 1 2 3 29 29 H 1.09005 * 110.47893 * 37.57147 * 4 2 1 30 30 H 1.08999 * 110.53322 * 274.90583 * 4 2 1 31 31 H 1.09008 * 110.03288 * 217.13404 * 5 4 2 32 32 H 1.08995 * 110.03718 * 95.75518 * 5 4 2 33 33 H 1.09006 * 109.47169 * 53.55202 * 8 6 5 34 34 H 1.09001 * 109.46881 * 173.54721 * 8 6 5 35 35 H 0.96998 * 120.00705 * 180.02562 * 15 14 12 36 36 H 1.09002 * 109.47186 * 204.54166 * 20 11 9 37 37 H 1.08999 * 109.47458 * 324.53709 * 20 11 9 38 38 H 1.08996 * 109.46675 * 299.99652 * 21 20 11 39 39 H 1.08999 * 109.46774 * 60.00095 * 21 20 11 40 40 H 0.96696 * 116.99805 * 180.02562 * 24 22 21 41 41 H 1.09005 * 110.48496 * 142.28625 * 25 6 5 42 42 H 1.08997 * 110.48369 * 264.79406 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9173 1.0188 0.0000 4 6 2.0794 -0.7953 1.2111 5 6 3.4931 -1.2267 0.7694 6 6 3.4931 -1.2267 -0.7694 7 1 4.2331 -0.5190 -1.1427 8 6 3.8004 -2.6310 -1.2934 9 6 5.2152 -3.0035 -0.9322 10 8 5.9094 -2.2229 -0.3159 11 7 5.7091 -4.2041 -1.2942 12 6 4.9244 -5.0867 -1.9904 13 1 3.8620 -5.1299 -1.8013 14 6 5.4959 -5.9255 -2.9393 15 7 6.6468 -5.6084 -3.4886 16 14 4.6282 -7.5040 -3.4343 17 1 3.3581 -7.6296 -2.6750 18 1 4.3345 -7.4721 -4.8896 19 1 5.5025 -8.6655 -3.1311 20 6 7.0844 -4.5665 -0.9426 21 6 7.1149 -5.1349 0.4776 22 6 8.5295 -5.5082 0.8390 23 8 9.4218 -5.3368 0.0426 24 8 8.7982 -6.0312 2.0457 25 6 2.0788 -0.7960 -1.2100 26 1 -0.3633 -1.0260 0.0598 27 1 -0.3633 0.5647 0.8586 28 1 -0.3633 0.4611 -0.9183 29 1 1.4578 -1.6691 1.4073 30 1 2.1333 -0.1585 2.0940 31 1 3.7121 -2.2271 1.1428 32 1 4.2332 -0.5189 1.1427 33 1 3.1105 -3.3455 -0.8442 34 1 3.6857 -2.6474 -2.3772 35 1 7.0457 -6.1938 -4.1513 36 1 7.4526 -5.3169 -1.6422 37 1 7.7178 -3.6809 -0.9932 38 1 6.7468 -4.3845 1.1772 39 1 6.4816 -6.0206 0.5282 40 1 9.7204 -6.2545 2.2319 41 1 2.1318 -0.1592 -2.0931 42 1 1.4582 -1.6700 -1.4077 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594301614.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:44 Heat of formation + Delta-G solvation = -155.085519 kcal Electronic energy + Delta-G solvation = -23055.799807 eV Core-core repulsion = 19613.688922 eV Total energy + Delta-G solvation = -3442.110884 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.82646 -39.06929 -37.69452 -35.78567 -34.91733 -32.26183 -31.83519 -30.62613 -29.12954 -26.84934 -25.19610 -24.35652 -23.04271 -20.61444 -19.84908 -19.37723 -18.83341 -17.74836 -16.69174 -16.07875 -15.86631 -15.79107 -15.40578 -14.59293 -14.29419 -13.99097 -13.81628 -13.39712 -13.26306 -12.74926 -12.69562 -12.52151 -12.31835 -12.00692 -11.68906 -11.32042 -11.28686 -11.14064 -11.01604 -10.74711 -10.67381 -10.60414 -10.42042 -10.32138 -10.28997 -10.15675 -10.07496 -9.99830 -9.83924 -9.15136 -8.40625 -7.61895 -6.42049 -4.10217 2.68212 3.07242 3.19313 3.22159 3.43442 3.90096 4.09764 4.69593 4.86477 4.92861 4.96904 5.06642 5.48386 5.57370 5.62228 5.71033 5.77364 5.80968 5.82188 5.90876 5.96123 6.03876 6.08660 6.11542 6.20417 6.25374 6.34715 6.37304 6.46485 6.48844 6.65831 6.69371 6.83608 6.85205 6.94005 6.96933 7.31387 7.45785 7.85394 8.29804 8.33880 9.03587 9.48044 9.90831 10.59541 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.013620 B = 0.005358 C = 0.004183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.261161 B = 5224.417863 C = 6691.846441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.099 4.099 3 H 0.071 0.929 4 C -0.122 4.122 5 C -0.104 4.104 6 C -0.074 4.074 7 H 0.072 0.928 8 C -0.111 4.111 9 C 0.470 3.530 10 O -0.601 6.601 11 N -0.442 5.442 12 C -0.345 4.345 13 H 0.093 0.907 14 C 0.043 3.957 15 N -0.852 5.852 16 Si 0.910 3.090 17 H -0.267 1.267 18 H -0.281 1.281 19 H -0.279 1.279 20 C 0.126 3.874 21 C -0.125 4.125 22 C 0.483 3.517 23 O -0.514 6.514 24 O -0.525 6.525 25 C -0.116 4.116 26 H 0.054 0.946 27 H 0.049 0.951 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.271 0.729 36 H 0.117 0.883 37 H 0.062 0.938 38 H 0.098 0.902 39 H 0.102 0.898 40 H 0.401 0.599 41 H 0.060 0.940 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.016 2.995 6.738 10.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.117 4.117 3 H 0.090 0.910 4 C -0.160 4.160 5 C -0.142 4.142 6 C -0.093 4.093 7 H 0.091 0.909 8 C -0.151 4.151 9 C 0.260 3.740 10 O -0.487 6.487 11 N -0.160 5.160 12 C -0.472 4.472 13 H 0.111 0.889 14 C -0.164 4.164 15 N -0.488 5.488 16 Si 0.737 3.263 17 H -0.191 1.191 18 H -0.207 1.207 19 H -0.205 1.205 20 C 0.002 3.998 21 C -0.164 4.164 22 C 0.325 3.675 23 O -0.402 6.402 24 O -0.337 6.337 25 C -0.154 4.154 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.095 0.905 34 H 0.102 0.898 35 H 0.081 0.919 36 H 0.134 0.866 37 H 0.080 0.920 38 H 0.116 0.884 39 H 0.120 0.880 40 H 0.258 0.742 41 H 0.079 0.921 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.696 3.430 6.562 9.983 hybrid contribution 0.321 -1.166 -0.267 1.238 sum -6.375 2.264 6.295 9.241 Atomic orbital electron populations 1.21759 0.95527 1.01609 1.01064 1.22104 0.94764 0.99122 0.95724 0.91050 1.22502 0.97225 0.99175 0.97073 1.22031 0.95209 1.01586 0.95343 1.21498 0.95779 0.96630 0.95400 0.90919 1.21492 0.95297 0.95978 1.02363 1.20548 0.89621 0.81255 0.82557 1.90524 1.61525 1.50839 1.45833 1.43463 1.11615 1.12829 1.48123 1.19468 0.92964 1.16548 1.18249 0.88921 1.25362 0.96552 0.99812 0.94678 1.69947 1.18581 1.35974 1.24297 0.86144 0.79686 0.82015 0.78494 1.19079 1.20655 1.20499 1.21167 0.85295 1.01835 0.91485 1.21876 0.88916 1.03572 1.02017 1.23815 0.92885 0.72641 0.78172 1.90703 1.48588 1.50624 1.50240 1.84593 1.36122 1.75844 1.37107 1.22516 0.96356 0.99413 0.97078 0.92693 0.93152 0.92969 0.92024 0.92474 0.92038 0.92065 0.90472 0.89766 0.91891 0.86565 0.91951 0.88403 0.87963 0.74182 0.92149 0.91501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.28 37.16 0.34 -1.10 16 2 C -0.10 -1.19 3.49 -88.59 -0.31 -1.50 16 3 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 4 C -0.12 -1.57 6.28 -25.04 -0.16 -1.73 16 5 C -0.10 -1.67 5.33 -25.62 -0.14 -1.81 16 6 C -0.07 -1.24 2.56 -89.50 -0.23 -1.47 16 7 H 0.07 1.33 7.97 -51.93 -0.41 0.92 16 8 C -0.11 -2.13 3.51 -27.88 -0.10 -2.22 16 9 C 0.47 10.91 7.12 -10.99 -0.08 10.83 16 10 O -0.60 -15.03 14.74 5.55 0.08 -14.94 16 11 N -0.44 -10.71 2.56 -114.81 -0.29 -11.01 16 12 C -0.34 -8.35 8.70 -14.94 -0.13 -8.48 16 13 H 0.09 2.12 6.97 -52.49 -0.37 1.76 16 14 C 0.04 1.05 4.92 -17.47 -0.09 0.96 16 15 N -0.85 -22.42 11.34 55.50 0.63 -21.79 16 16 Si 0.91 18.88 29.61 -169.99 -5.03 13.85 16 17 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 18 H -0.28 -5.87 7.11 56.52 0.40 -5.46 16 19 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 20 C 0.13 3.03 4.19 -4.04 -0.02 3.01 16 21 C -0.12 -2.48 6.10 -27.88 -0.17 -2.65 16 22 C 0.48 9.01 8.33 36.00 0.30 9.31 16 23 O -0.51 -11.15 16.74 -18.75 -0.31 -11.47 16 24 O -0.53 -7.63 13.42 -39.26 -0.53 -8.15 16 25 C -0.12 -1.57 5.81 -25.08 -0.15 -1.71 16 26 H 0.05 0.55 8.10 -51.92 -0.42 0.13 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.77 8.01 -51.93 -0.42 0.35 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 1.08 7.32 -51.92 -0.38 0.70 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.08 1.39 7.65 -51.93 -0.40 0.99 16 34 H 0.08 1.63 8.10 -51.93 -0.42 1.21 16 35 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 36 H 0.12 3.04 5.31 -51.93 -0.28 2.76 16 37 H 0.06 1.61 7.55 -51.93 -0.39 1.22 16 38 H 0.10 1.91 8.14 -51.93 -0.42 1.49 16 39 H 0.10 1.92 8.14 -51.93 -0.42 1.50 16 40 H 0.40 3.86 9.10 45.56 0.41 4.28 16 41 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.07 0.88 7.76 -51.93 -0.40 0.48 16 LS Contribution 342.63 15.07 5.16 5.16 Total: -1.00 -29.62 342.63 -7.19 -36.82 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -5.99 Total: 10.08 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: -0.91 Total: 1.46 kcal Atomic # 7 Polarization: -33.13 SS G_CDS: 0.34 Total: -32.80 kcal Atomic # 8 Polarization: -33.81 SS G_CDS: -0.76 Total: -34.57 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.03 Total: 13.85 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -29.62 -7.19 -36.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594301614.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.269 kcal (2) G-P(sol) polarization free energy of solvation -29.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds