Wall clock time and date at job start Tue Mar 31 2020 06:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47170 * 2 1 4 4 C 1.53003 * 109.47138 * 120.00046 * 2 1 3 5 5 C 1.53000 * 109.47138 * 179.97438 * 4 2 1 6 6 C 1.52992 * 109.46934 * 299.99837 * 5 4 2 7 7 C 1.52999 * 109.47686 * 60.00296 * 6 5 4 8 8 H 1.08998 * 109.47705 * 179.97438 * 7 6 5 9 9 C 1.50703 * 109.47110 * 59.99572 * 7 6 5 10 10 O 1.21300 * 120.00093 * 243.50831 * 9 7 6 11 11 N 1.34771 * 119.99961 * 63.77800 * 9 7 6 12 12 C 1.37105 * 120.00108 * 3.54300 * 11 9 7 13 13 H 1.07990 * 120.00024 * 228.87081 * 12 11 9 14 14 C 1.38944 * 119.99573 * 48.86991 * 12 11 9 15 15 N 1.31417 * 120.00146 * 203.91695 * 14 12 11 16 16 Si 1.86806 * 120.00431 * 23.91388 * 14 12 11 17 17 H 1.48504 * 109.46647 * 93.74576 * 16 14 12 18 18 H 1.48491 * 109.47434 * 213.74640 * 16 14 12 19 19 H 1.48502 * 109.46855 * 333.74853 * 16 14 12 20 20 C 1.46503 * 120.00236 * 183.54434 * 11 9 7 21 21 C 1.53003 * 109.46860 * 89.99923 * 20 11 9 22 22 C 1.50705 * 109.46438 * 180.02562 * 21 20 11 23 23 O 1.20815 * 120.00559 * 359.97438 * 22 21 20 24 24 O 1.34237 * 119.99244 * 180.02562 * 22 21 20 25 25 C 1.52994 * 109.47292 * 239.99956 * 2 1 3 26 26 H 1.08998 * 109.47170 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46976 * 300.00067 * 1 2 3 28 28 H 1.09002 * 109.46848 * 59.99654 * 1 2 3 29 29 H 1.09000 * 109.46622 * 299.99609 * 4 2 1 30 30 H 1.08998 * 109.47128 * 59.99928 * 4 2 1 31 31 H 1.08998 * 109.47170 * 59.99954 * 5 4 2 32 32 H 1.09000 * 109.46725 * 179.97438 * 5 4 2 33 33 H 1.08998 * 109.47288 * 300.00045 * 6 5 4 34 34 H 1.09002 * 109.47053 * 180.02562 * 6 5 4 35 35 H 0.96998 * 120.00370 * 179.97438 * 15 14 12 36 36 H 1.08997 * 109.47084 * 209.99874 * 20 11 9 37 37 H 1.09002 * 109.46819 * 330.00001 * 20 11 9 38 38 H 1.08997 * 109.47232 * 299.99860 * 21 20 11 39 39 H 1.09001 * 109.46822 * 60.00471 * 21 20 11 40 40 H 0.96699 * 116.99481 * 179.97438 * 24 22 21 41 41 H 1.09002 * 109.47382 * 59.99607 * 25 2 1 42 42 H 1.08998 * 109.47049 * 300.00118 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5700 -0.7218 1.2489 6 6 4.0794 -1.4435 -0.0002 7 6 3.5695 -0.7223 -1.2496 8 1 3.9328 -1.2361 -2.1395 9 6 4.0724 0.6984 -1.2499 10 8 3.2864 1.6200 -1.1857 11 7 5.3951 0.9450 -1.3270 12 6 6.2783 -0.0928 -1.4783 13 1 7.1461 -0.1607 -0.8392 14 6 6.0566 -1.0569 -2.4539 15 7 6.5790 -2.2557 -2.3237 16 14 5.0159 -0.6493 -3.9507 17 1 5.8970 -0.2012 -5.0590 18 1 4.2632 -1.8572 -4.3742 19 1 4.0604 0.4348 -3.6088 20 6 5.8893 2.3219 -1.2492 21 6 6.1671 2.6822 0.2116 22 6 6.6749 4.0989 0.2917 23 8 6.8021 4.7530 -0.7161 24 8 6.9870 4.6336 1.4827 25 6 2.0400 -0.7212 -1.2492 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.6767 -0.2073 2.1392 30 1 1.6767 -1.7489 1.2493 31 1 3.9337 0.3057 1.2487 32 1 3.9333 -1.2353 2.1392 33 1 3.7157 -2.4710 0.0000 34 1 5.1694 -1.4443 -0.0003 35 1 6.4240 -2.9290 -3.0046 36 1 6.8095 2.4109 -1.8267 37 1 5.1389 3.0007 -1.6545 38 1 5.2470 2.5933 0.7891 39 1 6.9176 2.0034 0.6168 40 1 7.3090 5.5454 1.4837 41 1 1.6767 -0.2075 -2.1392 42 1 1.6767 -1.7489 -1.2492 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594339792.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:05 Heat of formation + Delta-G solvation = -139.454994 kcal Electronic energy + Delta-G solvation = -24429.550189 eV Core-core repulsion = 20988.117095 eV Total energy + Delta-G solvation = -3441.433094 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.17861 -39.75221 -37.01653 -35.95927 -34.94347 -32.96314 -31.83217 -30.70332 -30.09504 -25.86840 -25.22426 -24.34653 -22.34284 -21.11646 -20.62061 -19.67574 -18.99431 -17.91806 -16.88631 -16.45545 -15.85167 -15.33006 -15.03207 -14.67102 -14.16851 -13.94085 -13.77057 -13.42687 -13.10647 -12.88217 -12.80607 -12.73244 -12.25717 -11.86878 -11.81646 -11.55085 -11.35187 -11.25533 -11.18843 -10.94434 -10.86692 -10.62395 -10.43248 -10.36458 -10.23633 -10.11179 -9.93826 -9.40291 -9.22741 -8.98391 -8.37305 -7.69824 -6.58237 -4.24809 2.45171 3.06202 3.18765 3.22037 3.29468 3.76716 4.06401 4.48369 4.81728 5.28024 5.31188 5.34120 5.39752 5.50416 5.69979 5.73871 5.77333 5.93889 6.01672 6.04277 6.10319 6.13809 6.14528 6.25266 6.32332 6.36227 6.40607 6.53981 6.55759 6.59809 6.63901 6.71627 6.87732 6.94374 6.96365 7.17424 7.36444 7.62466 7.65797 8.09539 8.40442 8.91737 9.23433 9.68039 10.49985 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.012883 B = 0.008305 C = 0.006156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2172.889402 B = 3370.852954 C = 4547.676661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.107 4.107 3 H 0.107 0.893 4 C -0.110 4.110 5 C -0.117 4.117 6 C -0.104 4.104 7 C -0.090 4.090 8 H 0.080 0.920 9 C 0.505 3.495 10 O -0.587 6.587 11 N -0.472 5.472 12 C -0.352 4.352 13 H 0.100 0.900 14 C 0.083 3.917 15 N -0.846 5.846 16 Si 0.849 3.151 17 H -0.279 1.279 18 H -0.278 1.278 19 H -0.255 1.255 20 C 0.121 3.879 21 C -0.123 4.123 22 C 0.484 3.516 23 O -0.519 6.519 24 O -0.522 6.522 25 C -0.094 4.094 26 H 0.044 0.956 27 H 0.046 0.954 28 H 0.049 0.951 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.107 0.893 35 H 0.277 0.723 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.103 0.897 39 H 0.109 0.891 40 H 0.403 0.597 41 H 0.055 0.945 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.893 3.270 6.431 8.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.125 4.125 3 H 0.125 0.875 4 C -0.148 4.148 5 C -0.154 4.154 6 C -0.141 4.141 7 C -0.111 4.111 8 H 0.097 0.903 9 C 0.296 3.704 10 O -0.471 6.471 11 N -0.194 5.194 12 C -0.479 4.479 13 H 0.118 0.882 14 C -0.126 4.126 15 N -0.479 5.479 16 Si 0.674 3.326 17 H -0.205 1.205 18 H -0.203 1.203 19 H -0.179 1.179 20 C -0.003 4.003 21 C -0.162 4.162 22 C 0.327 3.673 23 O -0.407 6.407 24 O -0.333 6.333 25 C -0.132 4.132 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.125 0.875 35 H 0.087 0.913 36 H 0.098 0.902 37 H 0.092 0.908 38 H 0.121 0.879 39 H 0.127 0.873 40 H 0.261 0.739 41 H 0.074 0.926 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.330 3.285 6.109 8.177 hybrid contribution -0.105 0.548 -1.037 1.178 sum -4.436 3.833 5.072 7.752 Atomic orbital electron populations 1.21794 0.96594 1.00591 1.00861 1.21453 0.94120 1.02914 0.94002 0.87548 1.21586 0.96180 0.99672 0.97321 1.21529 0.94983 1.00832 0.98071 1.21448 1.04362 0.96892 0.91423 1.21130 0.94918 0.94420 1.00661 0.90267 1.20470 0.82444 0.90632 0.76883 1.90436 1.55524 1.46675 1.54479 1.43678 1.05095 1.04724 1.65865 1.18792 1.08899 1.01394 1.18791 0.88246 1.25479 0.95461 0.94745 0.96922 1.69756 1.42452 1.01874 1.33831 0.87286 0.81510 0.79614 0.84208 1.20531 1.20330 1.17926 1.21197 1.00625 0.86298 0.92193 1.21794 1.03532 0.88442 1.02425 1.23739 0.73192 0.90240 0.80134 1.90695 1.50233 1.63026 1.36780 1.84589 1.78200 1.34904 1.35620 1.21391 0.94284 0.99285 0.98219 0.93650 0.93446 0.93205 0.93108 0.92925 0.92337 0.92742 0.92960 0.87477 0.91301 0.90231 0.90809 0.87861 0.87299 0.73880 0.92584 0.92627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.19 37.16 0.34 -1.71 16 2 C -0.11 -1.85 2.43 -90.62 -0.22 -2.07 16 3 H 0.11 2.14 5.39 -51.93 -0.28 1.86 16 4 C -0.11 -1.74 5.20 -26.73 -0.14 -1.88 16 5 C -0.12 -2.01 5.70 -26.73 -0.15 -2.16 16 6 C -0.10 -2.03 5.10 -26.74 -0.14 -2.17 16 7 C -0.09 -1.92 1.74 -91.80 -0.16 -2.08 16 8 H 0.08 1.82 2.96 -51.93 -0.15 1.66 16 9 C 0.50 11.49 3.25 -10.99 -0.04 11.45 16 10 O -0.59 -14.09 13.10 5.54 0.07 -14.01 16 11 N -0.47 -10.61 2.00 -114.81 -0.23 -10.84 16 12 C -0.35 -8.41 7.37 -14.93 -0.11 -8.52 16 13 H 0.10 2.48 8.06 -52.49 -0.42 2.05 16 14 C 0.08 2.04 3.66 -17.47 -0.06 1.98 16 15 N -0.85 -21.42 13.96 55.50 0.77 -20.64 16 16 Si 0.85 19.99 24.76 -169.99 -4.21 15.78 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 19 H -0.26 -6.29 5.73 56.52 0.32 -5.96 16 20 C 0.12 2.44 4.70 -4.04 -0.02 2.42 16 21 C -0.12 -2.06 6.14 -27.88 -0.17 -2.23 16 22 C 0.48 7.61 8.33 36.01 0.30 7.91 16 23 O -0.52 -9.58 16.74 -18.74 -0.31 -9.89 16 24 O -0.52 -6.41 13.42 -39.28 -0.53 -6.94 16 25 C -0.09 -1.78 4.38 -26.76 -0.12 -1.90 16 26 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.06 1.08 7.22 -51.93 -0.37 0.71 16 32 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.11 2.35 5.76 -51.93 -0.30 2.05 16 35 H 0.28 6.67 8.31 -40.82 -0.34 6.33 16 36 H 0.08 1.60 8.00 -51.93 -0.42 1.19 16 37 H 0.07 1.59 7.33 -51.93 -0.38 1.21 16 38 H 0.10 1.73 8.14 -51.93 -0.42 1.30 16 39 H 0.11 1.72 8.14 -51.93 -0.42 1.30 16 40 H 0.40 3.06 9.10 45.56 0.41 3.48 16 41 H 0.06 1.11 8.13 -51.93 -0.42 0.69 16 42 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 322.80 15.07 4.86 4.86 Total: -1.00 -28.14 322.80 -6.02 -34.17 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -5.77 Total: 8.46 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: -0.68 Total: -0.95 kcal Atomic # 7 Polarization: -32.03 SS G_CDS: 0.54 Total: -31.48 kcal Atomic # 8 Polarization: -30.07 SS G_CDS: -0.77 Total: -30.84 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -4.21 Total: 15.78 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -28.14 -6.02 -34.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594339792.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.288 kcal (2) G-P(sol) polarization free energy of solvation -28.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds