Wall clock time and date at job start Tue Mar 31 2020 06:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46762 * 2 1 4 4 C 1.52999 * 109.47395 * 120.00133 * 2 1 3 5 5 C 1.52998 * 109.47069 * 180.02562 * 4 2 1 6 6 C 1.53004 * 109.47124 * 299.99774 * 5 4 2 7 7 C 1.52995 * 109.46759 * 60.00451 * 6 5 4 8 8 H 1.09000 * 109.47975 * 59.99835 * 7 6 5 9 9 C 1.50699 * 109.46993 * 179.97438 * 7 6 5 10 10 O 1.21298 * 120.00077 * 105.98251 * 9 7 6 11 11 N 1.34774 * 120.00218 * 286.25656 * 9 7 6 12 12 C 1.37099 * 119.99950 * 355.46072 * 11 9 7 13 13 H 1.08003 * 120.00150 * 318.94236 * 12 11 9 14 14 C 1.38951 * 120.00333 * 138.94393 * 12 11 9 15 15 N 1.31417 * 119.99679 * 337.97444 * 14 12 11 16 16 Si 1.86799 * 120.00016 * 157.97689 * 14 12 11 17 17 H 1.48495 * 109.47196 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47222 * 120.00356 * 16 14 12 19 19 H 1.48504 * 109.46925 * 239.99707 * 16 14 12 20 20 C 1.46500 * 120.00424 * 175.46342 * 11 9 7 21 21 C 1.53004 * 109.47137 * 89.46025 * 20 11 9 22 22 C 1.50707 * 109.47006 * 180.02562 * 21 20 11 23 23 O 1.20823 * 119.99642 * 359.97438 * 22 21 20 24 24 O 1.34229 * 119.99945 * 179.97438 * 22 21 20 25 25 C 1.53004 * 109.46998 * 240.00474 * 2 1 3 26 26 H 1.09000 * 109.47028 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47331 * 299.99415 * 1 2 3 28 28 H 1.08998 * 109.47205 * 60.00075 * 1 2 3 29 29 H 1.09002 * 109.46849 * 299.99952 * 4 2 1 30 30 H 1.09000 * 109.46894 * 60.00087 * 4 2 1 31 31 H 1.09000 * 109.47328 * 60.00186 * 5 4 2 32 32 H 1.09006 * 109.47343 * 180.02562 * 5 4 2 33 33 H 1.08993 * 109.47125 * 300.00093 * 6 5 4 34 34 H 1.08997 * 109.46970 * 179.97438 * 6 5 4 35 35 H 0.96996 * 119.99437 * 180.02562 * 15 14 12 36 36 H 1.09002 * 109.47278 * 209.45965 * 20 11 9 37 37 H 1.08995 * 109.46983 * 329.45934 * 20 11 9 38 38 H 1.08997 * 109.46570 * 299.99912 * 21 20 11 39 39 H 1.08995 * 109.47259 * 60.00078 * 21 20 11 40 40 H 0.96701 * 116.99580 * 180.02562 * 24 22 21 41 41 H 1.08994 * 109.47304 * 60.00095 * 25 2 1 42 42 H 1.08993 * 109.46862 * 299.99488 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5700 -0.7207 1.2494 6 6 4.0805 -1.4416 0.0002 7 6 3.5705 -0.7202 -1.2490 8 1 3.9334 0.3076 -1.2488 9 6 4.0738 -1.4299 -2.4795 10 8 3.3158 -2.1063 -3.1422 11 7 5.3674 -1.3174 -2.8405 12 6 6.2038 -0.4843 -2.1434 13 1 5.8544 0.4855 -1.8212 14 6 7.5010 -0.8876 -1.8513 15 7 7.8042 -2.1663 -1.8378 16 14 8.8138 0.3877 -1.4778 17 1 8.2207 1.7467 -1.5576 18 1 9.3502 0.1605 -0.1118 19 1 9.9145 0.2695 -2.4677 20 6 5.8799 -2.0854 -3.9780 21 6 5.7042 -1.2729 -5.2626 22 6 6.2309 -2.0632 -6.4328 23 8 6.6991 -3.1631 -6.2572 24 8 6.1797 -1.5451 -7.6700 25 6 2.0400 -0.7212 -1.2493 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.6767 -0.2074 2.1392 30 1 1.6768 -1.7489 1.2491 31 1 3.9330 0.3071 1.2497 32 1 3.9335 -1.2349 2.1392 33 1 3.7176 -2.4693 0.0000 34 1 5.1705 -1.4407 0.0001 35 1 8.7097 -2.4478 -1.6336 36 1 6.9378 -2.2991 -3.8251 37 1 5.3286 -3.0218 -4.0621 38 1 4.6464 -1.0593 -5.4154 39 1 6.2556 -0.3365 -5.1785 40 1 6.5293 -2.0896 -8.3887 41 1 1.6767 -0.2073 -2.1392 42 1 1.6767 -1.7488 -1.2493 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594339793.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:08 Heat of formation + Delta-G solvation = -160.591845 kcal Electronic energy + Delta-G solvation = -23509.545729 eV Core-core repulsion = 20067.196073 eV Total energy + Delta-G solvation = -3442.349657 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.85852 -39.24978 -37.34980 -35.79319 -34.89056 -32.35018 -31.94691 -30.78706 -29.88920 -26.00004 -25.20213 -24.42179 -22.25479 -21.13885 -20.38241 -19.32796 -18.95972 -17.76413 -16.69711 -16.08799 -15.88269 -15.43718 -14.76334 -14.57285 -14.29115 -14.03325 -13.83987 -13.36698 -13.13459 -12.96471 -12.65194 -12.38666 -12.04226 -11.99870 -11.63118 -11.37213 -11.30221 -11.16771 -11.09880 -11.01513 -10.86199 -10.53522 -10.49012 -10.41272 -10.14450 -10.08865 -9.98907 -9.74406 -9.51877 -9.11162 -8.34402 -7.55646 -6.42492 -4.15248 2.66402 3.07356 3.19781 3.22105 3.42179 3.88536 4.10255 4.73371 4.89484 5.06201 5.21000 5.25000 5.56282 5.59088 5.67887 5.79771 5.86147 5.87519 5.95390 6.00889 6.03135 6.05221 6.15543 6.17271 6.27615 6.33475 6.38524 6.49432 6.58694 6.66202 6.74240 6.80268 6.82568 6.89683 7.05911 7.16865 7.26247 7.42393 7.90046 8.28437 8.32535 9.04397 9.46730 9.90793 10.59947 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.014049 B = 0.006194 C = 0.004683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.500878 B = 4519.773764 C = 5977.160244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.092 4.092 3 H 0.066 0.934 4 C -0.113 4.113 5 C -0.115 4.115 6 C -0.102 4.102 7 C -0.081 4.081 8 H 0.083 0.917 9 C 0.480 3.520 10 O -0.604 6.604 11 N -0.439 5.439 12 C -0.346 4.346 13 H 0.090 0.910 14 C 0.050 3.950 15 N -0.849 5.849 16 Si 0.905 3.095 17 H -0.266 1.266 18 H -0.281 1.281 19 H -0.280 1.280 20 C 0.132 3.868 21 C -0.125 4.125 22 C 0.482 3.518 23 O -0.515 6.515 24 O -0.525 6.525 25 C -0.093 4.093 26 H 0.052 0.948 27 H 0.048 0.952 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.052 0.948 34 H 0.089 0.911 35 H 0.270 0.730 36 H 0.104 0.896 37 H 0.064 0.936 38 H 0.098 0.902 39 H 0.104 0.896 40 H 0.401 0.599 41 H 0.057 0.943 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.486 5.133 0.749 7.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 H 0.084 0.916 4 C -0.150 4.150 5 C -0.153 4.153 6 C -0.140 4.140 7 C -0.102 4.102 8 H 0.101 0.899 9 C 0.270 3.730 10 O -0.490 6.490 11 N -0.157 5.157 12 C -0.474 4.474 13 H 0.107 0.893 14 C -0.158 4.158 15 N -0.484 5.484 16 Si 0.731 3.269 17 H -0.191 1.191 18 H -0.206 1.206 19 H -0.205 1.205 20 C 0.007 3.993 21 C -0.164 4.164 22 C 0.325 3.675 23 O -0.403 6.403 24 O -0.336 6.336 25 C -0.131 4.131 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.108 0.892 35 H 0.080 0.920 36 H 0.122 0.878 37 H 0.082 0.918 38 H 0.116 0.884 39 H 0.123 0.877 40 H 0.258 0.742 41 H 0.075 0.925 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.690 4.597 0.837 7.362 hybrid contribution 1.159 0.257 -0.343 1.236 sum -4.531 4.853 0.495 6.658 Atomic orbital electron populations 1.21812 0.95851 1.01542 1.00983 1.21156 0.94805 0.99575 0.95555 0.91557 1.21601 0.96210 1.00327 0.96865 1.21528 0.94861 1.00785 0.98130 1.21354 1.02818 0.97984 0.91833 1.20933 0.94702 1.00443 0.94164 0.89909 1.20618 0.83334 0.82842 0.86211 1.90520 1.56993 1.44766 1.56731 1.43350 1.07470 1.39871 1.25057 1.19327 0.94009 0.97895 1.36135 0.89271 1.25402 0.99322 0.95704 0.95394 1.69996 1.20636 1.14237 1.43497 0.86231 0.81060 0.81397 0.78198 1.19054 1.20643 1.20545 1.21048 1.03168 0.92855 0.82191 1.21881 1.02951 1.00697 0.90827 1.23841 0.74863 0.85366 0.83455 1.90700 1.42686 1.21505 1.85400 1.84595 1.78132 1.52433 1.18464 1.21409 0.94596 1.00892 0.96163 0.92868 0.93241 0.92950 0.92845 0.92290 0.92156 0.92502 0.92909 0.89232 0.91965 0.87774 0.91765 0.88382 0.87735 0.74170 0.92471 0.91626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 9.19 37.16 0.34 -1.38 16 2 C -0.09 -1.28 2.72 -90.62 -0.25 -1.53 16 3 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 4 C -0.11 -1.51 5.20 -26.73 -0.14 -1.65 16 5 C -0.12 -1.73 5.92 -26.73 -0.16 -1.89 16 6 C -0.10 -1.91 5.09 -26.73 -0.14 -2.05 16 7 C -0.08 -1.58 1.81 -91.75 -0.17 -1.75 16 8 H 0.08 1.58 6.93 -51.93 -0.36 1.22 16 9 C 0.48 11.27 6.86 -10.99 -0.08 11.19 16 10 O -0.60 -15.55 15.62 5.54 0.09 -15.46 16 11 N -0.44 -10.50 2.49 -114.81 -0.29 -10.79 16 12 C -0.35 -8.18 7.23 -14.93 -0.11 -8.28 16 13 H 0.09 2.03 6.88 -52.48 -0.36 1.67 16 14 C 0.05 1.19 4.90 -17.47 -0.09 1.10 16 15 N -0.85 -21.84 11.78 55.50 0.65 -21.19 16 16 Si 0.90 18.63 29.61 -169.99 -5.03 13.60 16 17 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 18 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 19 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 20 C 0.13 3.11 4.26 -4.04 -0.02 3.09 16 21 C -0.12 -2.44 6.14 -27.88 -0.17 -2.61 16 22 C 0.48 8.88 8.33 36.01 0.30 9.18 16 23 O -0.52 -11.04 16.74 -18.75 -0.31 -11.35 16 24 O -0.52 -7.52 13.42 -39.25 -0.53 -8.05 16 25 C -0.09 -1.59 3.88 -26.70 -0.10 -1.70 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.09 1.92 6.91 -51.93 -0.36 1.56 16 35 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 36 H 0.10 2.67 5.78 -51.93 -0.30 2.37 16 37 H 0.06 1.64 7.46 -51.93 -0.39 1.25 16 38 H 0.10 1.89 8.14 -51.93 -0.42 1.47 16 39 H 0.10 1.93 8.14 -51.93 -0.42 1.51 16 40 H 0.40 3.80 9.10 45.56 0.41 4.22 16 41 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 42 H 0.06 1.22 7.95 -51.93 -0.41 0.81 16 LS Contribution 339.54 15.07 5.12 5.12 Total: -1.00 -29.24 339.54 -7.04 -36.28 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -5.97 Total: 10.09 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: -0.77 Total: 1.75 kcal Atomic # 7 Polarization: -32.34 SS G_CDS: 0.37 Total: -31.98 kcal Atomic # 8 Polarization: -34.11 SS G_CDS: -0.75 Total: -34.86 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.03 Total: 13.60 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.24 -7.04 -36.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594339793.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.308 kcal (2) G-P(sol) polarization free energy of solvation -29.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds