Wall clock time and date at job start Tue Mar 31 2020 06:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 108.95560 * 2 1 4 4 C 1.52608 * 109.02578 * 241.10994 * 2 1 3 5 5 C 1.53891 * 111.14435 * 293.13599 * 4 2 1 6 6 C 1.51508 * 107.02628 * 305.10191 * 5 4 2 7 7 H 1.08995 * 109.10055 * 304.29107 * 6 5 4 8 8 O 1.41498 * 118.15494 * 179.90651 * 6 5 4 9 9 C 1.44616 * 108.23687 * 209.48842 * 8 6 5 10 10 H 1.09004 * 109.89163 * 125.49538 * 9 8 6 11 11 C 1.50703 * 109.91105 * 246.65742 * 9 8 6 12 12 O 1.20833 * 119.99642 * 2.82993 * 11 9 8 13 13 O 1.34228 * 120.00036 * 182.82762 * 11 9 8 14 14 C 1.55377 * 107.28122 * 6.08131 * 9 8 6 15 15 C 1.53803 * 101.19395 * 21.54023 * 14 9 8 16 16 H 1.09000 * 111.22443 * 80.53310 * 15 14 9 17 17 N 1.45716 * 115.52776 * 208.40753 * 15 14 9 18 18 C 1.46897 * 111.00286 * 298.45774 * 17 15 14 19 19 C 1.53002 * 109.47498 * 170.00089 * 18 17 15 20 20 C 1.50696 * 109.47291 * 180.02562 * 19 18 17 21 21 H 1.07998 * 119.99821 * 0.02562 * 20 19 18 22 22 C 1.37881 * 120.00000 * 179.97438 * 20 19 18 23 23 N 1.31508 * 120.00096 * 180.02562 * 22 20 19 24 24 Si 1.86799 * 119.99641 * 0.02562 * 22 20 19 25 25 H 1.48504 * 109.47154 * 89.99953 * 24 22 20 26 26 H 1.48500 * 109.47116 * 209.99619 * 24 22 20 27 27 H 1.48497 * 109.47438 * 329.99587 * 24 22 20 28 28 H 1.09002 * 109.46567 * 301.10570 * 1 2 3 29 29 H 1.09000 * 109.47370 * 61.10277 * 1 2 3 30 30 H 1.08998 * 109.47448 * 181.11160 * 1 2 3 31 31 H 1.09006 * 109.14453 * 53.56121 * 4 2 1 32 32 H 1.08995 * 109.14548 * 172.76056 * 4 2 1 33 33 H 1.09005 * 109.94789 * 64.48065 * 5 4 2 34 34 H 1.08997 * 109.94382 * 185.63443 * 5 4 2 35 35 H 0.96702 * 116.99465 * 180.02562 * 13 11 9 36 36 H 1.09002 * 111.08565 * 263.54698 * 14 9 8 37 37 H 1.09000 * 111.08508 * 139.53175 * 14 9 8 38 38 H 1.08999 * 109.47236 * 290.00890 * 18 17 15 39 39 H 1.09010 * 109.46857 * 50.00532 * 18 17 15 40 40 H 1.08994 * 109.46845 * 300.00601 * 19 18 17 41 41 H 1.09003 * 109.46430 * 60.00110 * 19 18 17 42 42 H 0.97000 * 119.99970 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8841 1.0309 0.0000 4 6 2.0275 -0.6970 -1.2632 5 6 1.6753 -2.1950 -1.2459 6 6 2.2392 -2.7686 0.0380 7 1 3.3073 -2.5564 0.0845 8 8 2.0452 -4.1463 0.2956 9 6 1.9957 -4.3362 1.7284 10 1 1.0772 -4.8554 2.0022 11 6 3.1921 -5.1325 2.1822 12 8 4.0368 -5.4619 1.3834 13 8 3.3192 -5.4756 3.4736 14 6 2.0206 -2.9268 2.3819 15 6 1.5293 -2.0494 1.2183 16 1 0.4435 -2.0848 1.1284 17 7 2.0113 -0.6743 1.2216 18 6 1.5643 0.0374 2.4265 19 6 2.2858 1.3833 2.5211 20 6 1.8277 2.1131 3.7574 21 1 1.0956 1.6618 4.4106 22 6 2.3442 3.3563 4.0552 23 7 1.9448 3.9930 5.1344 24 14 3.6111 4.1364 2.9257 25 1 2.9196 4.9460 1.8905 26 1 4.5100 5.0118 3.7199 27 1 4.4109 3.0715 2.2687 28 1 -0.3632 0.5309 0.8799 29 1 -0.3634 0.4966 -0.8997 30 1 -0.3634 -1.0274 0.0199 31 1 1.5658 -0.2313 -2.1339 32 1 3.1097 -0.5858 -1.3302 33 1 0.5930 -2.3228 -1.2663 34 1 2.1243 -2.6924 -2.1056 35 1 4.1037 -5.9860 3.7169 36 1 3.0318 -2.6511 2.6812 37 1 1.3359 -2.8750 3.2284 38 1 0.4887 0.2048 2.3715 39 1 1.7944 -0.5609 3.3082 40 1 3.3614 1.2158 2.5760 41 1 2.0558 1.9815 1.6394 42 1 2.3078 4.8678 5.3437 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594340281.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:22 Heat of formation + Delta-G solvation = -127.248205 kcal Electronic energy + Delta-G solvation = -23715.030868 eV Core-core repulsion = 20274.127100 eV Total energy + Delta-G solvation = -3440.903768 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.23700 -39.92564 -37.74523 -36.17254 -34.31712 -32.89244 -31.73019 -30.59712 -29.60500 -27.18456 -25.18213 -24.56753 -22.64949 -21.53041 -21.36583 -20.06326 -18.89527 -18.19670 -17.10557 -16.72604 -16.48432 -16.24806 -15.65140 -15.38892 -14.91351 -14.50867 -14.10798 -13.79264 -13.45076 -13.28956 -12.84345 -12.63639 -12.43314 -12.34450 -12.23594 -11.98714 -11.92523 -11.66986 -11.37498 -11.28265 -11.08742 -10.77183 -10.72004 -10.57647 -10.28262 -9.92773 -9.89486 -9.70422 -9.55590 -9.23936 -8.55735 -7.99759 -6.07538 -4.05936 2.00858 2.59139 3.29203 3.37561 3.42942 3.46582 4.12343 4.33635 4.43424 4.53632 4.81126 4.91085 4.94995 4.96415 5.09292 5.20866 5.23719 5.27365 5.46247 5.49728 5.58668 5.65212 5.75696 5.84400 5.86629 5.91876 6.01255 6.10357 6.13335 6.19911 6.30778 6.33705 6.53839 6.65599 6.71843 7.09695 7.19899 7.48413 7.55577 7.73256 7.79625 8.49034 8.96279 9.55078 11.05759 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.017793 B = 0.005004 C = 0.004313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.316542 B = 5594.114208 C = 6490.587117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.071 3.929 3 H 0.094 0.906 4 C -0.108 4.108 5 C -0.107 4.107 6 C 0.075 3.925 7 H 0.074 0.926 8 O -0.341 6.341 9 C 0.094 3.906 10 H 0.125 0.875 11 C 0.467 3.533 12 O -0.501 6.501 13 O -0.513 6.513 14 C -0.131 4.131 15 C 0.039 3.961 16 H 0.070 0.930 17 N -0.510 5.510 18 C 0.061 3.939 19 C -0.005 4.005 20 C -0.521 4.521 21 H 0.070 0.930 22 C 0.069 3.931 23 N -0.903 5.903 24 Si 0.878 3.122 25 H -0.278 1.278 26 H -0.288 1.288 27 H -0.263 1.263 28 H 0.068 0.932 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.411 0.589 36 H 0.094 0.906 37 H 0.099 0.901 38 H 0.036 0.964 39 H 0.069 0.931 40 H 0.024 0.976 41 H 0.011 0.989 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.490 -15.605 -9.557 18.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.038 4.038 3 H 0.112 0.888 4 C -0.146 4.146 5 C -0.144 4.144 6 C 0.017 3.983 7 H 0.092 0.908 8 O -0.259 6.259 9 C 0.034 3.966 10 H 0.143 0.857 11 C 0.308 3.692 12 O -0.387 6.387 13 O -0.325 6.325 14 C -0.169 4.169 15 C -0.071 4.071 16 H 0.087 0.913 17 N -0.234 5.234 18 C -0.065 4.065 19 C -0.043 4.043 20 C -0.560 4.560 21 H 0.088 0.912 22 C -0.133 4.133 23 N -0.542 5.542 24 Si 0.706 3.294 25 H -0.204 1.204 26 H -0.214 1.214 27 H -0.187 1.187 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.270 0.730 36 H 0.112 0.888 37 H 0.117 0.883 38 H 0.055 0.945 39 H 0.087 0.913 40 H 0.042 0.958 41 H 0.029 0.971 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.040 -15.460 -9.945 18.412 hybrid contribution 0.343 0.317 -0.072 0.473 sum -0.697 -15.142 -10.017 18.169 Atomic orbital electron populations 1.22535 0.97711 1.01810 1.02905 1.21810 0.93017 0.99407 0.89523 0.88773 1.21609 1.02136 0.93581 0.97243 1.21450 1.01282 0.95578 0.96121 1.22516 1.00210 0.79592 0.95970 0.90823 1.88394 1.93318 1.25572 1.18636 1.22562 0.94210 0.96705 0.83085 0.85747 1.23882 0.87863 0.77589 0.79883 1.90732 1.42132 1.51326 1.54527 1.84523 1.50075 1.69370 1.28551 1.22873 1.04903 0.90435 0.98683 1.23150 0.98209 0.91293 0.94467 0.91277 1.62955 1.57436 0.99838 1.03197 1.22286 0.97899 0.96688 0.89621 1.19539 0.96507 0.91336 0.96933 1.21059 1.25177 1.02216 1.07545 0.91153 1.24981 0.96294 0.96968 0.95009 1.69908 1.44003 1.14598 1.25702 0.86796 0.82110 0.79536 0.81007 1.20368 1.21435 1.18738 0.91327 0.92241 0.92589 0.90726 0.91047 0.91180 0.91001 0.73001 0.88752 0.88286 0.94549 0.91304 0.95791 0.97081 0.92716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.47 8.21 37.16 0.31 -2.16 16 2 C 0.07 1.00 2.73 -67.53 -0.18 0.82 16 3 H 0.09 1.50 6.45 -51.93 -0.34 1.16 16 4 C -0.11 -1.25 5.41 -26.47 -0.14 -1.40 16 5 C -0.11 -1.21 5.76 -27.02 -0.16 -1.37 16 6 C 0.08 1.00 2.90 -26.22 -0.08 0.92 16 7 H 0.07 1.11 8.12 -51.93 -0.42 0.69 16 8 O -0.34 -4.70 10.59 -54.65 -0.58 -5.28 16 9 C 0.09 1.09 4.06 -26.62 -0.11 0.98 16 10 H 0.13 1.09 8.14 -51.93 -0.42 0.67 16 11 C 0.47 5.77 7.55 36.01 0.27 6.04 16 12 O -0.50 -7.94 17.29 -25.36 -0.44 -8.38 16 13 O -0.51 -4.77 13.42 -39.25 -0.53 -5.30 16 14 C -0.13 -1.59 5.19 -25.05 -0.13 -1.72 16 15 C 0.04 0.51 1.97 -66.67 -0.13 0.38 16 16 H 0.07 0.89 5.96 -51.93 -0.31 0.58 16 17 N -0.51 -8.03 4.63 -217.30 -1.01 -9.03 16 18 C 0.06 1.15 4.61 -3.82 -0.02 1.13 16 19 C -0.01 -0.13 4.03 -27.88 -0.11 -0.24 16 20 C -0.52 -14.42 9.66 -34.44 -0.33 -14.75 16 21 H 0.07 2.08 7.99 -52.49 -0.42 1.67 16 22 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 23 N -0.90 -27.47 13.96 55.43 0.77 -26.69 16 24 Si 0.88 21.49 27.47 -169.99 -4.67 16.82 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 26 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 27 H -0.26 -6.24 6.54 56.52 0.37 -5.87 16 28 H 0.07 1.02 6.23 -51.93 -0.32 0.69 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.66 5.00 -51.93 -0.26 0.40 16 31 H 0.07 0.73 8.13 -51.93 -0.42 0.31 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.07 0.75 7.05 -51.93 -0.37 0.38 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.41 2.11 9.10 45.56 0.41 2.53 16 36 H 0.09 1.28 7.87 -51.93 -0.41 0.87 16 37 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 38 H 0.04 0.68 5.91 -51.93 -0.31 0.37 16 39 H 0.07 1.29 7.14 -51.92 -0.37 0.92 16 40 H 0.02 0.57 7.20 -51.93 -0.37 0.20 16 41 H 0.01 0.25 6.02 -51.93 -0.31 -0.06 16 42 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 322.85 15.07 4.87 4.87 Total: -1.00 -33.05 322.85 -7.99 -41.04 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -5.49 Total: 1.45 kcal Atomic # 6 Polarization: -8.59 SS G_CDS: -0.91 Total: -9.50 kcal Atomic # 7 Polarization: -35.50 SS G_CDS: -0.23 Total: -35.73 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: -1.54 Total: -18.95 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.67 Total: 16.82 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.05 -7.99 -41.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594340281.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.209 kcal (2) G-P(sol) polarization free energy of solvation -33.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds