Wall clock time and date at job start Tue Mar 31 2020 06:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08998 * 109.02673 * 2 1 4 4 C 1.52604 * 108.97422 * 241.10214 * 2 1 3 5 5 C 1.53869 * 111.22871 * 293.04295 * 4 2 1 6 6 C 1.51691 * 106.97798 * 304.81712 * 5 4 2 7 7 H 1.08994 * 109.81581 * 303.35684 * 6 5 4 8 8 O 1.42384 * 117.26724 * 177.11524 * 6 5 4 9 9 C 1.45177 * 105.18595 * 198.96585 * 8 6 5 10 10 H 1.09000 * 109.88821 * 267.35385 * 9 8 6 11 11 C 1.50706 * 110.00615 * 146.22294 * 9 8 6 12 12 O 1.20822 * 119.99871 * 357.22156 * 11 9 8 13 13 O 1.34231 * 119.99824 * 177.22344 * 11 9 8 14 14 C 1.55072 * 107.17029 * 26.75640 * 9 8 6 15 15 C 1.53144 * 103.09056 * 1.76434 * 14 9 8 16 16 H 1.08996 * 111.19713 * 90.69639 * 15 14 9 17 17 N 1.45539 * 116.30383 * 218.23946 * 15 14 9 18 18 C 1.46900 * 111.00427 * 300.72795 * 17 15 14 19 19 C 1.52995 * 109.47560 * 175.36177 * 18 17 15 20 20 C 1.50696 * 109.47325 * 185.18471 * 19 18 17 21 21 H 1.07995 * 120.00066 * 359.97438 * 20 19 18 22 22 C 1.37878 * 120.00214 * 179.97438 * 20 19 18 23 23 N 1.31522 * 119.99935 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00344 * 180.02562 * 22 20 19 25 25 H 1.48493 * 109.46976 * 179.97438 * 24 22 20 26 26 H 1.48503 * 109.46759 * 59.99677 * 24 22 20 27 27 H 1.48503 * 109.46692 * 300.00315 * 24 22 20 28 28 H 1.08997 * 109.47036 * 298.09688 * 1 2 3 29 29 H 1.09004 * 109.47146 * 58.09922 * 1 2 3 30 30 H 1.09003 * 109.47234 * 178.09316 * 1 2 3 31 31 H 1.08997 * 109.12663 * 53.49006 * 4 2 1 32 32 H 1.09003 * 109.12588 * 172.65222 * 4 2 1 33 33 H 1.08996 * 109.95445 * 64.18373 * 5 4 2 34 34 H 1.08997 * 109.94953 * 185.45583 * 5 4 2 35 35 H 0.96702 * 116.99830 * 180.02562 * 13 11 9 36 36 H 1.08999 * 110.69484 * 243.36347 * 14 9 8 37 37 H 1.09001 * 110.84205 * 120.23463 * 14 9 8 38 38 H 1.09006 * 109.46824 * 55.36054 * 18 17 15 39 39 H 1.09005 * 109.46608 * 295.36353 * 18 17 15 40 40 H 1.08999 * 109.47174 * 65.18090 * 19 18 17 41 41 H 1.09005 * 109.47067 * 305.18466 * 19 18 17 42 42 H 0.97001 * 120.00013 * 359.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8853 1.0304 0.0000 4 6 2.0261 -0.6974 -1.2634 5 6 1.6764 -2.1957 -1.2467 6 6 2.2501 -2.7702 0.0346 7 1 3.3218 -2.5769 0.0788 8 8 1.9959 -4.1450 0.3043 9 6 2.2327 -4.3034 1.7278 10 1 3.2648 -4.6082 1.9004 11 6 1.2914 -5.3344 2.2955 12 8 0.4611 -5.8503 1.5854 13 8 1.3756 -5.6796 3.5899 14 6 1.9705 -2.9266 2.3915 15 6 1.5354 -2.0507 1.2130 16 1 0.4540 -2.0782 1.0797 17 7 2.0114 -0.6754 1.2214 18 6 1.5584 0.0313 2.4270 19 6 2.1715 1.4327 2.4575 20 6 1.8105 2.1108 3.7540 21 1 1.2040 1.5941 4.4830 22 6 2.2545 3.3909 4.0094 23 7 2.9935 4.0200 3.1217 24 14 1.8076 4.2313 5.6167 25 1 2.4037 5.5910 5.6468 26 1 2.3340 3.4352 6.7545 27 1 0.3303 4.3352 5.7269 28 1 -0.3633 0.4840 0.9065 29 1 -0.3634 0.5431 -0.8725 30 1 -0.3634 -1.0271 -0.0342 31 1 1.5628 -0.2322 -2.1335 32 1 3.1081 -0.5848 -1.3320 33 1 0.5942 -2.3253 -1.2605 34 1 2.1224 -2.6914 -2.1089 35 1 0.7508 -6.3455 3.9082 36 1 2.8823 -2.5375 2.8446 37 1 1.1743 -2.9986 3.1325 38 1 1.8724 -0.5221 3.3121 39 1 0.4713 0.1104 2.4147 40 1 1.7851 2.0166 1.6222 41 1 3.2559 1.3566 2.3769 42 1 3.2265 3.5832 2.2876 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594340282.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:24 Heat of formation + Delta-G solvation = -133.579441 kcal Electronic energy + Delta-G solvation = -23684.909850 eV Core-core repulsion = 20243.731539 eV Total energy + Delta-G solvation = -3441.178311 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.21008 -39.98375 -37.72446 -36.24903 -34.39308 -33.12039 -31.63384 -30.50268 -29.01577 -27.00958 -25.02980 -24.23982 -22.73789 -21.72274 -21.34029 -20.50081 -18.89263 -18.10590 -17.07544 -16.88606 -16.39688 -16.02453 -15.67362 -15.40980 -15.03591 -14.30727 -13.98028 -13.74969 -13.50917 -13.43472 -12.80782 -12.65953 -12.49187 -12.27995 -12.09905 -11.86553 -11.76308 -11.65903 -11.34872 -11.11237 -10.97154 -10.78653 -10.70119 -10.52636 -10.17560 -10.13136 -10.04213 -9.80755 -9.57372 -8.59375 -8.33404 -7.95660 -6.37817 -4.06969 1.95448 2.45615 3.42475 3.44100 3.60429 3.62961 4.15050 4.36528 4.53207 4.57880 4.76992 4.91594 4.99281 5.02373 5.09519 5.21471 5.26059 5.39922 5.48385 5.54784 5.61259 5.66041 5.75791 5.83764 5.88673 5.92800 6.04928 6.08519 6.16495 6.19506 6.23917 6.39335 6.54315 6.60530 6.76267 7.21708 7.29131 7.55268 7.65080 7.67310 8.20347 8.44163 8.86835 9.65086 11.03201 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.018411 B = 0.004682 C = 0.003950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.503102 B = 5978.855827 C = 7086.277816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.072 3.928 3 H 0.096 0.904 4 C -0.107 4.107 5 C -0.107 4.107 6 C 0.073 3.927 7 H 0.082 0.918 8 O -0.342 6.342 9 C 0.091 3.909 10 H 0.114 0.886 11 C 0.479 3.521 12 O -0.498 6.498 13 O -0.512 6.512 14 C -0.131 4.131 15 C 0.037 3.963 16 H 0.061 0.939 17 N -0.507 5.507 18 C 0.061 3.939 19 C 0.016 3.984 20 C -0.603 4.603 21 H 0.046 0.954 22 C 0.017 3.983 23 N -0.912 5.912 24 Si 1.067 2.933 25 H -0.282 1.282 26 H -0.288 1.288 27 H -0.289 1.289 28 H 0.065 0.935 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.413 0.587 36 H 0.105 0.895 37 H 0.084 0.916 38 H 0.066 0.934 39 H 0.028 0.972 40 H 0.007 0.993 41 H 0.017 0.983 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.036 -15.660 -4.918 16.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.036 4.036 3 H 0.114 0.886 4 C -0.145 4.145 5 C -0.144 4.144 6 C 0.016 3.984 7 H 0.100 0.900 8 O -0.260 6.260 9 C 0.031 3.969 10 H 0.132 0.868 11 C 0.320 3.680 12 O -0.384 6.384 13 O -0.324 6.324 14 C -0.169 4.169 15 C -0.073 4.073 16 H 0.079 0.921 17 N -0.231 5.231 18 C -0.065 4.065 19 C -0.021 4.021 20 C -0.642 4.642 21 H 0.065 0.935 22 C -0.187 4.187 23 N -0.548 5.548 24 Si 0.896 3.104 25 H -0.208 1.208 26 H -0.214 1.214 27 H -0.215 1.215 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.272 0.728 36 H 0.123 0.877 37 H 0.102 0.898 38 H 0.084 0.916 39 H 0.046 0.954 40 H 0.025 0.975 41 H 0.035 0.965 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.330 -14.262 -4.550 15.029 hybrid contribution -1.567 -1.833 -0.429 2.449 sum -2.897 -16.095 -4.979 17.095 Atomic orbital electron populations 1.22524 0.97932 1.01611 1.02852 1.21808 0.92869 0.99516 0.89425 0.88580 1.21600 1.02132 0.93485 0.97310 1.21467 1.01439 0.95595 0.95923 1.22789 0.99938 0.79547 0.96168 0.90021 1.88892 1.90736 1.26787 1.19582 1.22536 0.97453 0.93598 0.83293 0.86810 1.23268 0.83336 0.81533 0.79846 1.90733 1.35522 1.52112 1.60072 1.84507 1.60865 1.59507 1.27546 1.22621 1.04704 0.91423 0.98145 1.22947 0.98367 0.91327 0.94611 0.92102 1.62941 1.57315 0.99707 1.03169 1.22318 0.97269 0.97232 0.89672 1.19206 0.96130 0.89696 0.97070 1.21982 1.36407 1.02368 1.03448 0.93519 1.25797 0.94289 0.94876 1.03720 1.70781 1.34802 1.40189 1.08993 0.83565 0.75991 0.76273 0.74597 1.20752 1.21444 1.21544 0.91561 0.92248 0.92704 0.90758 0.90958 0.91148 0.90954 0.72809 0.87662 0.89783 0.91606 0.95398 0.97479 0.96518 0.92040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.78 8.25 37.15 0.31 -2.48 16 2 C 0.07 1.10 2.66 -67.51 -0.18 0.92 16 3 H 0.10 1.68 6.38 -51.93 -0.33 1.35 16 4 C -0.11 -1.32 5.41 -26.48 -0.14 -1.46 16 5 C -0.11 -1.29 5.74 -26.94 -0.15 -1.44 16 6 C 0.07 0.98 2.92 -26.08 -0.08 0.91 16 7 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 8 O -0.34 -4.88 10.74 -54.61 -0.59 -5.46 16 9 C 0.09 1.09 3.95 -26.79 -0.11 0.99 16 10 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 11 C 0.48 5.92 7.47 36.01 0.27 6.19 16 12 O -0.50 -7.84 17.29 -25.31 -0.44 -8.28 16 13 O -0.51 -4.65 13.42 -39.26 -0.53 -5.18 16 14 C -0.13 -1.68 5.38 -25.56 -0.14 -1.82 16 15 C 0.04 0.54 2.02 -67.06 -0.14 0.41 16 16 H 0.06 0.94 5.80 -51.93 -0.30 0.64 16 17 N -0.51 -8.41 4.70 -217.77 -1.02 -9.44 16 18 C 0.06 1.22 4.48 -3.83 -0.02 1.21 16 19 C 0.02 0.40 4.01 -27.89 -0.11 0.29 16 20 C -0.60 -16.78 9.11 -34.44 -0.31 -17.09 16 21 H 0.05 1.28 7.74 -52.49 -0.41 0.87 16 22 C 0.02 0.49 5.46 -17.82 -0.10 0.39 16 23 N -0.91 -27.52 13.65 55.43 0.76 -26.76 16 24 Si 1.07 24.96 29.90 -169.99 -5.08 19.88 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 26 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 27 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 28 H 0.07 1.10 6.17 -51.93 -0.32 0.78 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.05 0.76 4.98 -51.93 -0.26 0.50 16 31 H 0.07 0.79 8.13 -51.93 -0.42 0.37 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.07 0.87 6.93 -51.93 -0.36 0.51 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.41 1.93 9.10 45.56 0.41 2.35 16 36 H 0.10 1.34 8.02 -51.93 -0.42 0.92 16 37 H 0.08 1.06 7.73 -51.93 -0.40 0.65 16 38 H 0.07 1.31 7.18 -51.93 -0.37 0.94 16 39 H 0.03 0.56 6.07 -51.93 -0.32 0.25 16 40 H 0.01 0.18 6.57 -51.93 -0.34 -0.16 16 41 H 0.02 0.44 8.01 -51.93 -0.42 0.02 16 42 H 0.27 8.09 7.22 -40.82 -0.29 7.79 16 LS Contribution 324.61 15.07 4.89 4.89 Total: -1.00 -32.97 324.61 -8.36 -41.33 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -5.45 Total: 2.00 kcal Atomic # 6 Polarization: -12.09 SS G_CDS: -0.90 Total: -12.99 kcal Atomic # 7 Polarization: -35.93 SS G_CDS: -0.27 Total: -36.20 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: -1.55 Total: -18.92 kcal Atomic # 14 Polarization: 24.96 SS G_CDS: -5.08 Total: 19.88 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -32.97 -8.36 -41.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594340282.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.247 kcal (2) G-P(sol) polarization free energy of solvation -32.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds