Wall clock time and date at job start Tue Mar 31 2020 06:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 110.53765 * 2 1 4 4 C 1.54887 * 110.48675 * 122.61441 * 2 1 3 5 5 C 1.54889 * 102.91165 * 156.52802 * 4 2 1 6 6 C 1.54462 * 104.10271 * 322.30164 * 5 4 2 7 7 C 1.53871 * 106.68577 * 23.34331 * 6 5 4 8 8 C 1.53000 * 110.07189 * 240.85351 * 7 6 5 9 9 C 1.50698 * 110.03316 * 119.44182 * 7 6 5 10 10 O 1.21286 * 120.00004 * 234.01906 * 9 7 6 11 11 N 1.34772 * 119.99824 * 54.02300 * 9 7 6 12 12 C 1.37102 * 120.00190 * 184.35181 * 11 9 7 13 13 H 1.08003 * 120.00438 * 214.56025 * 12 11 9 14 14 C 1.38952 * 119.99923 * 34.55620 * 12 11 9 15 15 N 1.31420 * 119.99777 * 19.38393 * 14 12 11 16 16 Si 1.86800 * 120.00337 * 199.38704 * 14 12 11 17 17 H 1.48500 * 109.46567 * 359.97438 * 16 14 12 18 18 H 1.48491 * 109.47079 * 119.99773 * 16 14 12 19 19 H 1.48507 * 109.46871 * 240.00071 * 16 14 12 20 20 C 1.46510 * 120.00261 * 4.34812 * 11 9 7 21 21 C 1.53000 * 109.46907 * 97.17396 * 20 11 9 22 22 C 1.50693 * 109.46900 * 177.68765 * 21 20 11 23 23 O 1.20826 * 120.00145 * 359.97438 * 22 21 20 24 24 O 1.34235 * 120.00253 * 179.97438 * 22 21 20 25 25 H 1.08997 * 109.47067 * 298.83647 * 1 2 3 26 26 H 1.09003 * 109.47386 * 58.84150 * 1 2 3 27 27 H 1.09005 * 109.46826 * 178.83784 * 1 2 3 28 28 H 1.08994 * 110.75922 * 274.93775 * 4 2 1 29 29 H 1.08998 * 110.75833 * 38.12408 * 4 2 1 30 30 H 1.09005 * 110.48664 * 80.83058 * 5 4 2 31 31 H 1.09005 * 110.48310 * 203.47166 * 5 4 2 32 32 H 1.09000 * 109.85514 * 264.09868 * 6 5 4 33 33 H 1.09001 * 110.12156 * 142.72953 * 6 5 4 34 34 H 1.08999 * 109.47123 * 184.85807 * 8 7 6 35 35 H 1.09002 * 109.47188 * 304.84960 * 8 7 6 36 36 H 1.08996 * 109.47234 * 64.85114 * 8 7 6 37 37 H 0.96999 * 119.99917 * 184.94308 * 15 14 12 38 38 H 1.08996 * 109.47019 * 217.17113 * 20 11 9 39 39 H 1.08991 * 109.46522 * 337.17263 * 20 11 9 40 40 H 1.09001 * 109.46878 * 297.68815 * 21 20 11 41 41 H 1.09000 * 109.47345 * 57.68691 * 21 20 11 42 42 H 0.96698 * 117.00429 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9124 1.0207 0.0000 4 6 2.0721 -0.7820 1.2221 5 6 3.4905 -1.2020 0.7629 6 6 3.3165 -1.5404 -0.7342 7 6 2.0699 -0.7787 -1.2173 8 6 1.0134 -1.7652 -1.7189 9 6 2.4449 0.1796 -2.3182 10 8 2.1542 1.3534 -2.2256 11 7 3.1033 -0.2678 -3.4058 12 6 3.5230 0.6170 -4.3652 13 1 3.5253 0.3253 -5.4051 14 6 3.9455 1.8893 -3.9998 15 7 4.3077 2.1305 -2.7597 16 14 3.9986 3.2570 -5.2710 17 1 3.5447 2.7307 -6.5833 18 1 3.1050 4.3637 -4.8450 19 1 5.3891 3.7634 -5.3954 20 6 3.3705 -1.6998 -3.5628 21 6 2.3015 -2.3222 -4.4632 22 6 2.6082 -3.7830 -4.6709 23 8 3.5820 -4.2755 -4.1524 24 8 1.7994 -4.5370 -5.4319 25 1 -0.3633 0.4956 0.9002 26 1 -0.3634 0.5317 -0.8794 27 1 -0.3633 -1.0275 -0.0208 28 1 2.1251 -0.1383 2.1001 29 1 1.4562 -1.6583 1.4242 30 1 4.1916 -0.3767 0.8870 31 1 3.8277 -2.0772 1.3183 32 1 3.1693 -2.6135 -0.8565 33 1 4.1928 -1.2169 -1.2960 34 1 0.1715 -1.2141 -2.1378 35 1 1.4484 -2.4035 -2.4880 36 1 0.6678 -2.3809 -0.8885 37 1 4.5339 3.0336 -2.4874 38 1 4.3523 -1.8386 -4.0152 39 1 3.3489 -2.1825 -2.5859 40 1 1.3243 -2.2196 -3.9913 41 1 2.2953 -1.8118 -5.4263 42 1 2.0372 -5.4685 -5.5362 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594357348.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:26 Heat of formation + Delta-G solvation = -111.749203 kcal Electronic energy + Delta-G solvation = -24596.995198 eV Core-core repulsion = 21156.763517 eV Total energy + Delta-G solvation = -3440.231681 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.31380 -39.61136 -36.79256 -36.02142 -34.58477 -32.37741 -31.11558 -30.23803 -30.01351 -25.65130 -24.93646 -24.55334 -23.58828 -21.06243 -20.22185 -19.99135 -18.00702 -17.92749 -16.53865 -16.34059 -15.84833 -15.35051 -14.82306 -14.45129 -14.37091 -13.63070 -13.58022 -13.42082 -13.07144 -12.99333 -12.67297 -12.43913 -12.02524 -11.73315 -11.42522 -11.36139 -11.24196 -11.01577 -10.91805 -10.80322 -10.64152 -10.44197 -10.33426 -10.30400 -10.12968 -9.97666 -9.95666 -9.86407 -9.77689 -8.84873 -7.88598 -7.03482 -6.02264 -3.77628 2.40460 3.21715 3.34833 3.43152 3.44712 4.30142 4.44718 4.89469 5.01946 5.20154 5.23912 5.32671 5.42343 5.48459 5.64845 5.72351 5.77712 5.80855 5.86601 5.95882 6.01642 6.06120 6.10011 6.13750 6.24383 6.29280 6.35666 6.38267 6.41803 6.55396 6.57572 6.60455 6.73042 6.78772 6.81743 6.91753 7.12286 7.63103 8.05389 8.26749 9.10615 9.24792 9.72915 10.40146 11.03183 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.010864 B = 0.009403 C = 0.005887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2576.746448 B = 2977.179241 C = 4754.985473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.074 4.074 3 H 0.092 0.908 4 C -0.119 4.119 5 C -0.122 4.122 6 C -0.115 4.115 7 C -0.074 4.074 8 C -0.149 4.149 9 C 0.482 3.518 10 O -0.521 6.521 11 N -0.455 5.455 12 C -0.347 4.347 13 H 0.079 0.921 14 C 0.064 3.936 15 N -0.817 5.817 16 Si 0.905 3.095 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.288 1.288 20 C 0.102 3.898 21 C -0.143 4.143 22 C 0.482 3.518 23 O -0.518 6.518 24 O -0.522 6.522 25 H 0.044 0.956 26 H 0.056 0.944 27 H 0.051 0.949 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.077 0.923 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.055 0.945 37 H 0.261 0.739 38 H 0.072 0.928 39 H 0.088 0.912 40 H 0.112 0.888 41 H 0.109 0.891 42 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.367 -10.742 2.464 12.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.092 4.092 3 H 0.110 0.890 4 C -0.156 4.156 5 C -0.159 4.159 6 C -0.153 4.153 7 C -0.078 4.078 8 C -0.206 4.206 9 C 0.269 3.731 10 O -0.397 6.397 11 N -0.177 5.177 12 C -0.473 4.473 13 H 0.097 0.903 14 C -0.147 4.147 15 N -0.452 5.452 16 Si 0.732 3.268 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.214 1.214 20 C -0.023 4.023 21 C -0.182 4.182 22 C 0.324 3.676 23 O -0.406 6.406 24 O -0.334 6.334 25 H 0.063 0.937 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.096 0.904 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.090 0.910 39 H 0.106 0.894 40 H 0.130 0.870 41 H 0.128 0.872 42 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -5.220 -9.691 2.816 11.361 hybrid contribution 0.270 -0.001 -0.750 0.797 sum -4.950 -9.692 2.065 11.077 Atomic orbital electron populations 1.21835 0.95785 1.00896 1.01158 1.21816 0.94828 1.00429 0.92161 0.89024 1.22551 0.96236 0.99225 0.97630 1.22354 0.97171 1.00540 0.95862 1.22409 0.98304 0.98668 0.95912 1.21297 0.95190 0.95562 0.95730 1.22351 0.98842 0.98575 1.00869 1.19547 0.81307 0.88329 0.83908 1.90494 1.53444 1.17482 1.78234 1.43230 1.50470 1.02953 1.21015 1.19049 1.45140 0.95221 0.87906 0.90325 1.25005 0.94621 0.99036 0.95994 1.69947 1.36987 1.20767 1.17470 0.86269 0.77171 0.82217 0.81133 1.19776 1.20873 1.21446 1.21669 0.96153 0.85188 0.99286 1.22314 1.04207 0.86469 1.05167 1.23824 0.79570 0.90168 0.74030 1.90699 1.28278 1.74447 1.47165 1.84597 1.55261 1.27115 1.66377 0.93669 0.92456 0.92956 0.92277 0.92192 0.91565 0.92391 0.92044 0.90414 0.92257 0.91815 0.92616 0.92816 0.91006 0.89405 0.87017 0.87242 0.73902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 8.08 37.16 0.30 -1.89 16 2 C -0.07 -1.33 2.64 -88.96 -0.23 -1.56 16 3 H 0.09 2.01 7.02 -51.93 -0.36 1.64 16 4 C -0.12 -1.78 6.32 -24.74 -0.16 -1.94 16 5 C -0.12 -1.93 6.85 -24.97 -0.17 -2.10 16 6 C -0.12 -2.05 4.17 -25.51 -0.11 -2.16 16 7 C -0.07 -1.40 0.54 -154.55 -0.08 -1.49 16 8 C -0.15 -2.36 6.00 37.16 0.22 -2.14 16 9 C 0.48 11.73 5.54 -10.99 -0.06 11.66 16 10 O -0.52 -14.89 12.61 5.55 0.07 -14.82 16 11 N -0.45 -10.92 2.48 -114.81 -0.28 -11.20 16 12 C -0.35 -9.27 9.35 -14.93 -0.14 -9.41 16 13 H 0.08 2.01 7.90 -52.48 -0.41 1.59 16 14 C 0.06 1.78 4.38 -17.46 -0.08 1.71 16 15 N -0.82 -24.00 11.02 55.50 0.61 -23.39 16 16 Si 0.90 21.80 29.60 -169.99 -5.03 16.77 16 17 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 18 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 19 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 20 C 0.10 1.99 3.44 -4.04 -0.01 1.98 16 21 C -0.14 -2.29 5.28 -27.89 -0.15 -2.44 16 22 C 0.48 7.04 8.33 36.00 0.30 7.34 16 23 O -0.52 -8.85 16.73 -18.75 -0.31 -9.16 16 24 O -0.52 -5.95 13.42 -39.27 -0.53 -6.48 16 25 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.99 7.92 -51.93 -0.41 0.58 16 27 H 0.05 0.71 6.23 -51.93 -0.32 0.39 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.06 0.80 8.06 -51.93 -0.42 0.38 16 30 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.97 7.00 -51.93 -0.36 0.61 16 33 H 0.08 1.61 6.55 -51.93 -0.34 1.27 16 34 H 0.06 0.95 7.24 -51.93 -0.38 0.57 16 35 H 0.06 0.97 3.32 -51.93 -0.17 0.79 16 36 H 0.05 0.76 7.20 -51.93 -0.37 0.38 16 37 H 0.26 7.46 8.32 -40.82 -0.34 7.12 16 38 H 0.07 1.47 7.99 -51.93 -0.42 1.06 16 39 H 0.09 1.62 2.99 -51.93 -0.16 1.46 16 40 H 0.11 1.69 5.50 -51.93 -0.29 1.41 16 41 H 0.11 1.77 8.14 -51.93 -0.42 1.35 16 42 H 0.40 2.73 9.10 45.56 0.41 3.14 16 LS Contribution 321.13 15.07 4.84 4.84 Total: -1.00 -33.15 321.13 -6.25 -39.40 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -5.25 Total: 6.47 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: -0.37 Total: -2.43 kcal Atomic # 7 Polarization: -34.92 SS G_CDS: 0.33 Total: -34.59 kcal Atomic # 8 Polarization: -29.68 SS G_CDS: -0.77 Total: -30.45 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.03 Total: 16.77 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -33.15 -6.25 -39.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594357348.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.348 kcal (2) G-P(sol) polarization free energy of solvation -33.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds