Wall clock time and date at job start Tue Mar 31 2020 06:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 110.05536 * 2 1 4 4 C 1.54262 * 110.03416 * 238.58594 * 2 1 3 5 5 C 1.54891 * 104.19622 * 264.32527 * 4 2 1 6 6 C 1.55013 * 102.75179 * 322.04512 * 5 4 2 7 7 C 1.53877 * 110.03280 * 121.41876 * 2 1 3 8 8 C 1.53003 * 110.03110 * 238.61819 * 7 2 1 9 9 C 1.50697 * 110.03149 * 0.02562 * 7 2 1 10 10 O 1.21289 * 120.00530 * 353.27658 * 9 7 2 11 11 N 1.34779 * 119.99781 * 173.28224 * 9 7 2 12 12 C 1.37095 * 120.00228 * 6.07610 * 11 9 7 13 13 H 1.07995 * 120.00485 * 306.85356 * 12 11 9 14 14 C 1.38955 * 119.99645 * 126.84773 * 12 11 9 15 15 N 1.31410 * 119.99924 * 184.11343 * 14 12 11 16 16 Si 1.86795 * 120.00067 * 4.10628 * 14 12 11 17 17 H 1.48499 * 109.47104 * 94.70542 * 16 14 12 18 18 H 1.48502 * 109.47343 * 214.70712 * 16 14 12 19 19 H 1.48501 * 109.47248 * 334.70484 * 16 14 12 20 20 C 1.46498 * 119.99871 * 186.08499 * 11 9 7 21 21 C 1.53004 * 109.47538 * 84.79576 * 20 11 9 22 22 C 1.50698 * 109.47366 * 180.02562 * 21 20 11 23 23 O 1.20822 * 119.99904 * 359.97438 * 22 21 20 24 24 O 1.34228 * 119.99830 * 179.97438 * 22 21 20 25 25 H 1.09003 * 109.47255 * 301.28285 * 1 2 3 26 26 H 1.08993 * 109.47084 * 61.28614 * 1 2 3 27 27 H 1.09002 * 109.47129 * 181.28923 * 1 2 3 28 28 H 1.09000 * 110.48493 * 23.00129 * 4 2 1 29 29 H 1.08997 * 110.48851 * 145.51112 * 4 2 1 30 30 H 1.08999 * 110.75495 * 80.36889 * 5 4 2 31 31 H 1.08997 * 110.75667 * 203.55888 * 5 4 2 32 32 H 1.08999 * 110.50331 * 279.29398 * 6 5 4 33 33 H 1.09009 * 110.52329 * 156.61649 * 6 5 4 34 34 H 1.08999 * 109.47058 * 185.92314 * 8 7 2 35 35 H 1.09000 * 109.47259 * 305.92866 * 8 7 2 36 36 H 1.08998 * 109.47273 * 65.92356 * 8 7 2 37 37 H 0.96996 * 120.00259 * 179.97438 * 15 14 12 38 38 H 1.09000 * 109.47347 * 324.79932 * 20 11 9 39 39 H 1.08997 * 109.47188 * 204.79648 * 20 11 9 40 40 H 1.09000 * 109.47189 * 59.99521 * 21 20 11 41 41 H 1.09006 * 109.46970 * 300.00457 * 21 20 11 42 42 H 0.96700 * 116.99867 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0585 -0.7554 -1.2368 5 6 2.3281 -2.1901 -0.7192 6 6 2.8882 -1.9405 0.7045 7 6 2.0571 -0.7536 1.2337 8 6 2.9399 0.1707 2.0748 9 6 0.9038 -1.2598 2.0611 10 8 -0.2318 -0.9426 1.7769 11 7 1.1343 -2.0650 3.1171 12 6 2.4208 -2.3231 3.5144 13 1 3.1428 -2.6914 2.8007 14 6 2.7957 -2.1109 4.8355 15 7 4.0471 -2.2807 5.1987 16 14 1.5209 -1.5839 6.0950 17 1 0.9980 -2.7813 6.8008 18 1 2.1472 -0.6640 7.0782 19 1 0.4040 -0.8875 5.4074 20 6 0.0101 -2.6644 3.8403 21 6 -0.4225 -3.9512 3.1344 22 6 -1.5794 -4.5675 3.8780 23 8 -2.0131 -4.0327 4.8709 24 8 -2.1280 -5.7105 3.4372 25 1 -0.3634 0.5336 0.8783 26 1 -0.3633 0.4937 -0.9012 27 1 -0.3633 -1.0274 0.0231 28 1 1.3061 -0.7695 -2.0254 29 1 2.9798 -0.2985 -1.5980 30 1 1.4031 -2.7651 -0.6752 31 1 3.0652 -2.6942 -1.3442 32 1 3.9446 -1.6761 0.6582 33 1 2.7412 -2.8193 1.3325 34 1 3.3923 -0.3988 2.8867 35 1 3.7240 0.5944 1.4472 36 1 2.3324 0.9749 2.4896 37 1 4.3090 -2.1322 6.1208 38 1 -0.8242 -1.9632 3.8607 39 1 0.3160 -2.8950 4.8607 40 1 0.4117 -4.6524 3.1139 41 1 -0.7284 -3.7206 2.1139 42 1 -2.8676 -6.0678 3.9475 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594357351.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:31 Heat of formation + Delta-G solvation = -91.343484 kcal Electronic energy + Delta-G solvation = -24566.126994 eV Core-core repulsion = 21126.780172 eV Total energy + Delta-G solvation = -3439.346822 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.39484 -39.88530 -37.00852 -35.95954 -35.39247 -32.42164 -31.57985 -30.31217 -29.80309 -25.82215 -25.11267 -24.78534 -23.12398 -21.19325 -20.73986 -19.51618 -18.63364 -17.93757 -16.90883 -16.44043 -15.98495 -15.41961 -15.21520 -14.90639 -14.18108 -13.95617 -13.70521 -13.31047 -12.96606 -12.82818 -12.66223 -12.39699 -12.16093 -12.09073 -11.96011 -11.55616 -11.36966 -11.27460 -11.10401 -11.03645 -10.60399 -10.44383 -10.34927 -10.13245 -10.08554 -9.87530 -9.83428 -9.69212 -9.49459 -8.92917 -7.75013 -7.61312 -6.44906 -4.29523 2.45626 3.11609 3.19023 3.24508 3.32136 3.69351 4.12236 4.41581 4.86231 5.06424 5.17178 5.30359 5.31621 5.45436 5.70311 5.78343 5.92550 5.95975 6.00085 6.05043 6.07646 6.17498 6.24251 6.26237 6.29926 6.36649 6.48574 6.58308 6.62728 6.66445 6.68903 6.76120 6.82619 6.90232 7.06035 7.30779 7.32714 7.49647 8.06865 8.11549 8.21161 8.93255 9.26560 9.63468 10.60605 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.013741 B = 0.008462 C = 0.006267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.206678 B = 3308.261448 C = 4466.939236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.084 4.084 3 H 0.064 0.936 4 C -0.118 4.118 5 C -0.127 4.127 6 C -0.113 4.113 7 C -0.052 4.052 8 C -0.140 4.140 9 C 0.503 3.497 10 O -0.574 6.574 11 N -0.473 5.473 12 C -0.353 4.353 13 H 0.119 0.881 14 C 0.074 3.926 15 N -0.867 5.867 16 Si 0.873 3.127 17 H -0.274 1.274 18 H -0.290 1.290 19 H -0.258 1.258 20 C 0.117 3.883 21 C -0.125 4.125 22 C 0.483 3.517 23 O -0.519 6.519 24 O -0.521 6.521 25 H 0.074 0.926 26 H -0.003 1.003 27 H 0.068 0.932 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.092 0.908 34 H 0.101 0.899 35 H 0.045 0.955 36 H 0.040 0.960 37 H 0.275 0.725 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.112 0.888 41 H 0.106 0.894 42 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.693 -1.933 -7.222 8.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.103 4.103 3 H 0.082 0.918 4 C -0.155 4.155 5 C -0.164 4.164 6 C -0.150 4.150 7 C -0.055 4.055 8 C -0.197 4.197 9 C 0.294 3.706 10 O -0.458 6.458 11 N -0.195 5.195 12 C -0.479 4.479 13 H 0.136 0.864 14 C -0.134 4.134 15 N -0.502 5.502 16 Si 0.701 3.299 17 H -0.200 1.200 18 H -0.217 1.217 19 H -0.182 1.182 20 C -0.006 4.006 21 C -0.164 4.164 22 C 0.326 3.674 23 O -0.407 6.407 24 O -0.332 6.332 25 H 0.093 0.907 26 H 0.016 0.984 27 H 0.086 0.914 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.110 0.890 34 H 0.120 0.880 35 H 0.064 0.936 36 H 0.059 0.941 37 H 0.085 0.915 38 H 0.094 0.906 39 H 0.087 0.913 40 H 0.130 0.870 41 H 0.124 0.876 42 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -3.880 -1.462 -7.129 8.247 hybrid contribution -0.948 -0.143 1.323 1.634 sum -4.829 -1.605 -5.806 7.720 Atomic orbital electron populations 1.22300 0.93398 1.02971 0.97805 1.21810 0.97347 0.98124 0.93011 0.91762 1.22422 0.99955 0.95916 0.97256 1.22551 1.00339 0.96467 0.97070 1.22673 0.98716 0.98724 0.94892 1.20905 0.94288 0.96202 0.94123 1.21960 0.98160 0.98498 1.01067 1.20763 0.89714 0.77887 0.82198 1.90759 1.25544 1.59380 1.70120 1.43834 1.05661 1.41582 1.28396 1.19356 0.85152 1.46709 0.96729 0.86449 1.25485 0.95554 0.94241 0.98133 1.69638 1.15728 1.45942 1.18909 0.86981 0.82026 0.79425 0.81467 1.20011 1.21724 1.18178 1.21438 0.91907 0.92156 0.95087 1.21844 0.94116 0.99376 1.01025 1.23762 0.83228 0.77541 0.82904 1.90702 1.61900 1.61854 1.26293 1.84582 1.50121 1.40147 1.58368 0.90693 0.98410 0.91361 0.92278 0.92311 0.92082 0.92242 0.91346 0.88985 0.88009 0.93595 0.94067 0.91472 0.90581 0.91343 0.86989 0.87625 0.73876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.96 7.24 37.16 0.27 -1.69 16 2 C -0.08 -1.41 3.16 -89.50 -0.28 -1.70 16 3 H 0.06 1.03 7.67 -51.93 -0.40 0.64 16 4 C -0.12 -1.70 6.37 -25.07 -0.16 -1.86 16 5 C -0.13 -1.88 6.91 -24.67 -0.17 -2.05 16 6 C -0.11 -1.94 4.83 -25.01 -0.12 -2.06 16 7 C -0.05 -0.97 0.61 -154.54 -0.09 -1.07 16 8 C -0.14 -2.65 7.86 37.16 0.29 -2.36 16 9 C 0.50 10.72 6.22 -10.99 -0.07 10.65 16 10 O -0.57 -12.84 10.13 5.55 0.06 -12.78 16 11 N -0.47 -10.42 2.04 -114.81 -0.23 -10.65 16 12 C -0.35 -8.24 6.16 -14.93 -0.09 -8.33 16 13 H 0.12 2.81 5.08 -52.49 -0.27 2.54 16 14 C 0.07 1.83 5.24 -17.47 -0.09 1.74 16 15 N -0.87 -22.62 13.96 55.50 0.77 -21.84 16 16 Si 0.87 20.60 24.80 -169.99 -4.22 16.38 16 17 H -0.27 -6.50 7.09 56.52 0.40 -6.09 16 18 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 19 H -0.26 -6.22 6.21 56.52 0.35 -5.86 16 20 C 0.12 2.51 2.73 -4.04 -0.01 2.50 16 21 C -0.12 -2.19 6.10 -27.88 -0.17 -2.36 16 22 C 0.48 8.11 8.33 36.00 0.30 8.41 16 23 O -0.52 -10.30 16.74 -18.75 -0.31 -10.62 16 24 O -0.52 -6.74 13.42 -39.25 -0.53 -7.27 16 25 H 0.07 1.51 6.29 -52.24 -0.33 1.18 16 26 H 0.00 -0.04 8.14 -51.93 -0.42 -0.47 16 27 H 0.07 1.33 6.33 -51.60 -0.33 1.00 16 28 H 0.06 0.80 7.84 -51.93 -0.41 0.40 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.07 1.14 7.86 -51.93 -0.41 0.73 16 33 H 0.09 1.74 5.12 -51.92 -0.27 1.47 16 34 H 0.10 2.21 5.63 -51.93 -0.29 1.91 16 35 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 38 H 0.08 1.72 7.37 -51.93 -0.38 1.34 16 39 H 0.07 1.56 3.80 -51.93 -0.20 1.36 16 40 H 0.11 1.86 8.14 -51.93 -0.42 1.44 16 41 H 0.11 1.78 8.14 -51.93 -0.42 1.36 16 42 H 0.40 3.32 9.10 45.56 0.41 3.74 16 LS Contribution 318.79 15.07 4.80 4.80 Total: -1.00 -28.04 318.79 -5.48 -33.52 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -5.43 Total: 8.63 kcal Atomic # 6 Polarization: 0.22 SS G_CDS: -0.40 Total: -0.18 kcal Atomic # 7 Polarization: -33.04 SS G_CDS: 0.54 Total: -32.50 kcal Atomic # 8 Polarization: -29.89 SS G_CDS: -0.78 Total: -30.67 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -4.22 Total: 16.38 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -28.04 -5.48 -33.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594357351.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.821 kcal (2) G-P(sol) polarization free energy of solvation -28.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds