Wall clock time and date at job start Tue Mar 31 2020 06:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.46624 * 2 1 4 4 C 1.50707 * 109.46944 * 240.00118 * 2 1 3 5 5 O 1.20816 * 119.99738 * 239.99486 * 4 2 1 6 6 O 1.34227 * 119.99810 * 60.00193 * 4 2 1 7 7 N 1.46497 * 109.47269 * 120.00329 * 2 1 3 8 8 C 1.34778 * 119.99862 * 240.00173 * 7 2 1 9 9 O 1.21279 * 119.99880 * 5.39501 * 8 7 2 10 10 C 1.50700 * 119.99995 * 185.39729 * 8 7 2 11 11 C 1.52994 * 109.47067 * 173.12797 * 10 8 7 12 12 C 1.53005 * 109.47296 * 180.02562 * 11 10 8 13 13 C 1.52998 * 109.47385 * 179.97438 * 12 11 10 14 14 C 1.50700 * 109.47156 * 179.97438 * 13 12 11 15 15 H 1.08001 * 120.00069 * 0.02562 * 14 13 12 16 16 C 1.37878 * 119.99816 * 180.02562 * 14 13 12 17 17 N 1.31504 * 120.00203 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99776 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47248 * 60.00084 * 18 16 14 20 20 H 1.48494 * 109.47042 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47280 * 300.00219 * 18 16 14 22 22 C 1.46496 * 120.00205 * 59.99641 * 7 2 1 23 23 C 1.53003 * 117.52186 * 227.63929 * 22 7 2 24 24 C 1.52994 * 60.00273 * 107.48280 * 23 22 7 25 25 H 1.09008 * 109.47017 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47095 * 299.99653 * 1 2 3 27 27 H 1.08997 * 109.46981 * 59.99960 * 1 2 3 28 28 H 0.96700 * 116.99715 * 179.97438 * 6 4 2 29 29 H 1.09005 * 109.47107 * 293.12351 * 10 8 7 30 30 H 1.08996 * 109.47080 * 53.12183 * 10 8 7 31 31 H 1.09006 * 109.47318 * 299.99721 * 11 10 8 32 32 H 1.08996 * 109.47672 * 59.99748 * 11 10 8 33 33 H 1.08996 * 109.46750 * 299.99481 * 12 11 10 34 34 H 1.08999 * 109.46873 * 59.99649 * 12 11 10 35 35 H 1.08994 * 109.47217 * 300.00303 * 13 12 11 36 36 H 1.09007 * 109.46803 * 60.00022 * 13 12 11 37 37 H 0.97002 * 120.00540 * 179.97438 * 17 16 14 38 38 H 1.09004 * 115.55126 * 81.93483 * 22 7 2 39 39 H 1.09000 * 117.49951 * 214.97731 * 23 22 7 40 40 H 1.09003 * 117.49693 * 359.97438 * 23 22 7 41 41 H 1.09005 * 117.49447 * 252.51380 * 24 23 22 42 42 H 1.08995 * 117.49809 * 107.49250 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7270 -1.6927 -1.1197 6 8 1.7081 -0.2518 -2.4496 7 7 2.0184 -0.6907 1.1961 8 6 2.7932 -0.0357 2.0833 9 8 3.0057 1.1501 1.9434 10 6 3.3955 -0.7768 3.2491 11 6 4.3590 0.1465 3.9974 12 6 4.9710 -0.6061 5.1807 13 6 5.9350 0.3170 5.9287 14 6 6.5373 -0.4241 7.0945 15 1 6.2606 -1.4510 7.2828 16 6 7.4417 0.2088 7.9207 17 7 7.7783 1.4592 7.6917 18 14 8.1878 -0.7097 9.3661 19 1 8.9265 -1.8983 8.8694 20 1 9.1225 0.1866 10.0928 21 1 7.1069 -1.1473 10.2857 22 6 1.6645 -2.0932 1.4279 23 6 1.1545 -2.4729 2.8196 24 6 0.1852 -2.4233 1.6370 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 2.0541 -0.7405 -3.2089 29 1 2.6024 -1.0983 3.9242 30 1 3.9378 -1.6490 2.8841 31 1 5.1522 0.4681 3.3224 32 1 3.8168 1.0187 4.3624 33 1 4.1782 -0.9279 5.8558 34 1 5.5134 -1.4781 4.8153 35 1 6.7278 0.6386 5.2534 36 1 5.3929 1.1892 6.2940 37 1 8.4143 1.9046 8.2732 38 1 2.2735 -2.8256 0.8980 39 1 1.4282 -3.4550 3.2052 40 1 1.0827 -1.6792 3.5632 41 1 -0.5247 -1.5968 1.6024 42 1 -0.1789 -3.3728 1.2446 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001602814013.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:16 Heat of formation + Delta-G solvation = -108.570156 kcal Electronic energy + Delta-G solvation = -22497.176788 eV Core-core repulsion = 19057.082961 eV Total energy + Delta-G solvation = -3440.093827 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.16991 -39.81427 -37.61065 -36.41314 -35.14255 -34.28929 -32.61029 -31.42885 -29.48660 -25.92333 -25.29590 -23.35736 -22.78328 -22.38881 -21.15702 -19.91683 -19.23549 -18.36524 -17.23428 -16.90769 -16.48739 -16.11763 -15.86208 -15.37562 -15.09723 -14.45544 -14.33540 -13.92487 -13.77968 -13.53271 -13.07904 -12.63747 -12.53307 -12.26820 -12.00368 -11.85676 -11.63049 -11.58343 -11.41001 -11.08927 -10.91910 -10.78301 -10.70097 -10.51493 -10.42700 -10.33272 -9.82031 -9.57473 -9.20736 -9.04806 -8.95813 -8.27957 -5.92829 -3.95317 1.85737 2.19891 2.56504 2.97056 3.34739 3.37010 3.41271 3.43587 4.25542 4.50715 4.51217 4.52703 4.59032 4.65619 4.85562 4.93723 5.17401 5.25826 5.33791 5.37268 5.41712 5.42973 5.55249 5.66161 5.70956 5.75680 5.94608 6.12613 6.14583 6.17460 6.33812 6.57506 6.86863 7.02450 7.12597 7.24215 7.53877 7.76484 7.93012 8.06444 8.09002 8.50514 9.12236 9.68137 11.18512 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.029846 B = 0.002985 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.916136 B = 9377.341268 C = 9751.184121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.151 3.849 3 H 0.138 0.862 4 C 0.470 3.530 5 O -0.503 6.503 6 O -0.515 6.515 7 N -0.582 5.582 8 C 0.524 3.476 9 O -0.530 6.530 10 C -0.138 4.138 11 C -0.105 4.105 12 C -0.109 4.109 13 C 0.020 3.980 14 C -0.521 4.521 15 H 0.054 0.946 16 C 0.055 3.945 17 N -0.896 5.896 18 Si 0.891 3.109 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 C 0.066 3.934 23 C -0.176 4.176 24 C -0.190 4.190 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.410 0.590 29 H 0.100 0.900 30 H 0.092 0.908 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.047 0.953 34 H 0.047 0.953 35 H 0.015 0.985 36 H 0.016 0.984 37 H 0.260 0.740 38 H 0.128 0.872 39 H 0.111 0.889 40 H 0.107 0.893 41 H 0.107 0.893 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.830 -7.303 -18.925 27.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.046 3.954 3 H 0.156 0.844 4 C 0.310 3.690 5 O -0.390 6.390 6 O -0.326 6.326 7 N -0.317 5.317 8 C 0.315 3.685 9 O -0.405 6.405 10 C -0.177 4.177 11 C -0.143 4.143 12 C -0.147 4.147 13 C -0.017 4.017 14 C -0.559 4.559 15 H 0.072 0.928 16 C -0.145 4.145 17 N -0.535 5.535 18 Si 0.719 3.281 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.038 4.038 23 C -0.213 4.213 24 C -0.228 4.228 25 H 0.094 0.906 26 H 0.096 0.904 27 H 0.099 0.901 28 H 0.269 0.731 29 H 0.117 0.883 30 H 0.111 0.889 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.034 0.966 36 H 0.034 0.966 37 H 0.070 0.930 38 H 0.145 0.855 39 H 0.129 0.871 40 H 0.125 0.875 41 H 0.125 0.875 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -18.534 -6.555 -18.554 27.033 hybrid contribution 0.773 -0.883 0.158 1.184 sum -17.762 -7.439 -18.396 26.631 Atomic orbital electron populations 1.22350 0.91668 1.04022 1.04142 1.20411 0.96222 0.98200 0.80617 0.84442 1.23960 0.77200 0.82815 0.84998 1.90709 1.35229 1.25988 1.87070 1.84522 1.72252 1.59141 1.16700 1.47305 1.51941 1.11469 1.20963 1.21282 0.76352 0.87400 0.83483 1.90701 1.59280 1.15446 1.75073 1.22029 1.00754 1.00259 0.94659 1.21504 0.97454 0.97846 0.97543 1.21635 0.98965 0.99028 0.95042 1.19089 0.93607 0.94507 0.94477 1.21252 1.24561 0.98471 1.11607 0.92796 1.25036 0.96737 0.94905 0.97866 1.69959 1.33911 1.10916 1.38722 0.86675 0.79065 0.79636 0.82700 1.20284 1.21335 1.20289 1.21781 0.97141 0.83527 1.01342 1.23517 1.02476 1.04112 0.91201 1.23597 0.92603 1.03777 1.02798 0.90566 0.90440 0.90106 0.73058 0.88251 0.88927 0.92043 0.91668 0.93441 0.93456 0.96633 0.96597 0.92998 0.85502 0.87077 0.87483 0.87526 0.87884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.13 7.98 37.16 0.30 -0.84 16 2 C 0.15 1.52 3.16 -69.08 -0.22 1.30 16 3 H 0.14 1.54 6.91 -51.93 -0.36 1.18 16 4 C 0.47 4.75 7.52 36.01 0.27 5.02 16 5 O -0.50 -6.47 15.49 -18.74 -0.29 -6.76 16 6 O -0.51 -3.67 13.33 -39.25 -0.52 -4.19 16 7 N -0.58 -6.71 2.48 -159.89 -0.40 -7.10 16 8 C 0.52 7.68 7.47 -10.98 -0.08 7.60 16 9 O -0.53 -9.55 15.32 5.56 0.09 -9.47 16 10 C -0.14 -1.94 4.03 -27.89 -0.11 -2.05 16 11 C -0.11 -1.93 4.53 -26.73 -0.12 -2.05 16 12 C -0.11 -2.28 5.15 -26.73 -0.14 -2.42 16 13 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 14 C -0.52 -15.14 9.11 -34.44 -0.31 -15.45 16 15 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 16 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 17 N -0.90 -27.75 13.28 55.43 0.74 -27.01 16 18 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 C 0.07 0.62 4.56 -67.93 -0.31 0.31 16 23 C -0.18 -1.38 8.53 -26.73 -0.23 -1.61 16 24 C -0.19 -1.30 8.65 -26.73 -0.23 -1.53 16 25 H 0.08 0.47 5.29 -51.92 -0.27 0.20 16 26 H 0.08 0.54 8.08 -51.93 -0.42 0.12 16 27 H 0.08 0.46 8.11 -51.93 -0.42 0.03 16 28 H 0.41 1.27 9.10 45.56 0.41 1.68 16 29 H 0.10 1.20 5.33 -51.93 -0.28 0.92 16 30 H 0.09 1.22 8.00 -51.93 -0.42 0.80 16 31 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.06 1.26 8.02 -51.93 -0.42 0.84 16 33 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.02 0.45 8.14 -51.92 -0.42 0.03 16 37 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 38 H 0.13 1.30 7.21 -51.93 -0.37 0.93 16 39 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.11 0.92 6.19 -51.93 -0.32 0.60 16 41 H 0.11 0.69 5.84 -51.93 -0.30 0.38 16 42 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 343.03 15.07 5.17 5.17 Total: -1.00 -35.64 343.03 -7.33 -42.97 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -5.67 Total: -0.87 kcal Atomic # 6 Polarization: -8.35 SS G_CDS: -1.42 Total: -9.77 kcal Atomic # 7 Polarization: -34.45 SS G_CDS: 0.34 Total: -34.11 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: -0.73 Total: -20.42 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -35.64 -7.33 -42.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001602814013.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.599 kcal (2) G-P(sol) polarization free energy of solvation -35.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds