Wall clock time and date at job start Tue Mar 31 2020 06:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47274 * 2 1 4 4 C 1.50701 * 109.47195 * 239.99956 * 2 1 3 5 5 H 1.07998 * 119.99827 * 239.99994 * 4 2 1 6 6 C 1.37874 * 119.99881 * 59.99915 * 4 2 1 7 7 N 1.31513 * 120.00119 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00257 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47161 * 90.00005 * 8 6 4 10 10 H 1.48495 * 109.47681 * 210.00428 * 8 6 4 11 11 H 1.48506 * 109.46967 * 330.00339 * 8 6 4 12 12 C 1.50699 * 109.46867 * 120.00189 * 2 1 3 13 13 O 1.21287 * 120.00172 * 113.65666 * 12 2 1 14 14 N 1.34777 * 120.00235 * 293.65098 * 12 2 1 15 15 C 1.46926 * 120.62708 * 356.30908 * 14 12 2 16 16 C 1.53202 * 108.77119 * 233.62573 * 15 14 12 17 17 C 1.53035 * 109.31061 * 305.36361 * 16 15 14 18 18 C 1.53045 * 109.53867 * 61.36926 * 17 16 15 19 19 C 1.46926 * 120.63294 * 176.32306 * 14 12 2 20 20 H 1.08992 * 109.59100 * 246.30526 * 19 14 12 21 21 C 1.52999 * 109.58487 * 6.58838 * 19 14 12 22 22 C 1.53006 * 109.47160 * 179.81248 * 21 19 14 23 23 C 1.50704 * 109.47290 * 184.35571 * 22 21 19 24 24 O 1.20832 * 119.99656 * 0.02562 * 23 22 21 25 25 O 1.34224 * 119.99731 * 180.02562 * 23 22 21 26 26 H 1.08993 * 109.47077 * 304.98492 * 1 2 3 27 27 H 1.09001 * 109.47027 * 64.99194 * 1 2 3 28 28 H 1.09001 * 109.47138 * 184.98677 * 1 2 3 29 29 H 0.96997 * 120.00213 * 180.02562 * 7 6 4 30 30 H 1.09000 * 109.58560 * 113.84328 * 15 14 12 31 31 H 1.09000 * 109.58848 * 353.40925 * 15 14 12 32 32 H 1.08996 * 109.49585 * 185.41408 * 16 15 14 33 33 H 1.09000 * 109.49568 * 65.31459 * 16 15 14 34 34 H 1.09001 * 109.45597 * 181.38524 * 17 16 15 35 35 H 1.09000 * 109.46677 * 301.34772 * 17 16 15 36 36 H 1.08998 * 109.49647 * 58.58421 * 18 17 16 37 37 H 1.08997 * 109.49464 * 178.67992 * 18 17 16 38 38 H 1.09001 * 109.47154 * 299.81120 * 21 19 14 39 39 H 1.09002 * 109.47408 * 59.81481 * 21 19 14 40 40 H 1.08999 * 109.46930 * 304.36038 * 22 21 19 41 41 H 1.09005 * 109.46372 * 64.36086 * 22 21 19 42 42 H 0.96703 * 116.99513 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3225 -1.1195 -4.0079 9 1 1.3448 -2.1615 -4.4124 10 1 2.4874 -0.1402 -5.1120 11 1 3.6309 -1.7565 -3.7119 12 6 2.0323 -0.7105 1.2304 13 8 2.6318 -1.7593 1.1229 14 7 1.8155 -0.1803 2.4505 15 6 1.1625 1.1282 2.5927 16 6 2.0514 2.0317 3.4533 17 6 2.3509 1.3311 4.7805 18 6 3.1046 0.0265 4.5119 19 6 2.2277 -0.8997 3.6634 20 1 1.3454 -1.1931 4.2320 21 6 3.0250 -2.1463 3.2743 22 6 3.4569 -2.8909 4.5392 23 6 4.3316 -4.0584 4.1610 24 8 4.5840 -4.2726 2.9989 25 8 4.8302 -4.8602 5.1150 26 1 -0.3633 0.5892 0.8419 27 1 -0.3633 0.4344 -0.9313 28 1 -0.3633 -1.0238 0.0893 29 1 0.7089 1.1614 -3.4843 30 1 0.1934 1.0024 3.0754 31 1 1.0277 1.5782 1.6091 32 1 1.5353 2.9720 3.6467 33 1 2.9855 2.2302 2.9278 34 1 2.9629 1.9821 5.4047 35 1 1.4151 1.1106 5.2941 36 1 4.0288 0.2439 3.9764 37 1 3.3381 -0.4603 5.4587 38 1 2.4024 -2.7996 2.6629 39 1 3.9078 -1.8508 2.7074 40 1 4.0143 -2.2140 5.1868 41 1 2.5745 -3.2537 5.0663 42 1 5.3862 -5.5958 4.8238 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603118583.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:10 Heat of formation + Delta-G solvation = -129.648076 kcal Electronic energy + Delta-G solvation = -23641.129507 eV Core-core repulsion = 20200.121673 eV Total energy + Delta-G solvation = -3441.007834 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.34614 -39.72279 -36.85140 -36.10931 -34.53588 -33.31547 -32.38449 -30.37350 -29.58105 -25.95659 -25.12742 -24.19189 -22.83803 -21.73901 -20.41908 -20.28704 -18.42641 -17.84270 -16.44275 -16.21488 -16.06774 -15.69437 -15.25535 -14.72523 -14.47660 -14.28935 -14.09744 -13.46542 -13.18978 -12.94810 -12.79416 -12.59671 -12.26957 -12.05120 -11.72843 -11.50525 -11.44012 -11.06214 -10.95266 -10.79498 -10.72809 -10.60918 -10.49266 -10.47613 -10.37467 -10.24517 -10.16292 -9.86851 -8.92353 -8.38351 -7.99275 -7.86931 -5.98857 -4.01410 2.33975 3.07775 3.37320 3.42770 3.50182 3.67861 3.75350 4.50891 4.82774 4.88553 4.95940 5.06645 5.15723 5.24909 5.28601 5.34565 5.47150 5.53387 5.65233 5.77156 5.81971 5.89869 5.94016 5.99846 6.13935 6.16293 6.27865 6.40040 6.54655 6.58573 6.66457 6.83420 6.88344 7.00192 7.26034 7.49372 7.80328 7.99282 8.04216 8.17148 8.44466 9.07938 9.30922 9.64019 11.08489 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.014412 B = 0.005796 C = 0.004328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1942.318033 B = 4829.733296 C = 6467.716413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.030 3.970 3 H 0.049 0.951 4 C -0.497 4.497 5 H 0.074 0.926 6 C 0.058 3.942 7 N -0.898 5.898 8 Si 0.898 3.102 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.273 1.273 12 C 0.518 3.482 13 O -0.528 6.528 14 N -0.623 5.623 15 C 0.110 3.890 16 C -0.138 4.138 17 C -0.116 4.116 18 C -0.136 4.136 19 C 0.148 3.852 20 H 0.063 0.937 21 C -0.097 4.097 22 C -0.124 4.124 23 C 0.471 3.529 24 O -0.498 6.498 25 O -0.527 6.527 26 H 0.018 0.982 27 H 0.094 0.906 28 H 0.027 0.973 29 H 0.260 0.740 30 H 0.058 0.942 31 H 0.100 0.900 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.099 0.901 39 H 0.086 0.914 40 H 0.100 0.900 41 H 0.099 0.901 42 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.674 -0.341 17.985 18.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.009 3.991 3 H 0.066 0.934 4 C -0.536 4.536 5 H 0.092 0.908 6 C -0.142 4.142 7 N -0.538 5.538 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.198 1.198 12 C 0.310 3.690 13 O -0.404 6.404 14 N -0.359 5.359 15 C -0.013 4.013 16 C -0.176 4.176 17 C -0.154 4.154 18 C -0.174 4.174 19 C 0.044 3.956 20 H 0.081 0.919 21 C -0.134 4.134 22 C -0.162 4.162 23 C 0.313 3.687 24 O -0.384 6.384 25 O -0.339 6.339 26 H 0.037 0.963 27 H 0.112 0.888 28 H 0.047 0.953 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.118 0.882 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.118 0.882 39 H 0.105 0.895 40 H 0.118 0.882 41 H 0.117 0.883 42 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges 1.746 -0.533 17.539 17.634 hybrid contribution 0.611 -0.783 -0.884 1.330 sum 2.357 -1.316 16.655 16.872 Atomic orbital electron populations 1.21837 0.96564 0.99077 1.01960 1.18862 0.94090 0.96643 0.89455 0.93367 1.21180 1.30688 1.12664 0.89019 0.90788 1.24929 0.95200 0.95067 0.99048 1.69862 1.37335 1.23135 1.23425 0.86481 0.79521 0.79246 0.82153 1.20711 1.21364 1.19763 1.22003 0.77378 0.85483 0.84165 1.90621 1.40532 1.23616 1.85643 1.48359 1.61888 1.20208 1.05427 1.21770 0.94522 0.83265 1.01775 1.21959 1.00981 0.98403 0.96244 1.21488 1.00198 0.96489 0.97238 1.22099 0.99427 0.96187 0.99694 1.21088 0.96244 0.91649 0.86570 0.91933 1.22105 1.02663 0.95630 0.93011 1.21716 0.98766 0.93403 1.02283 1.23646 0.78547 0.83133 0.83407 1.90816 1.56243 1.70797 1.20506 1.84540 1.64186 1.42395 1.42827 0.96335 0.88764 0.95340 0.93053 0.92330 0.88184 0.91138 0.91448 0.92169 0.92050 0.91405 0.91295 0.88243 0.89505 0.88191 0.88294 0.73656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 8.67 37.16 0.32 -2.83 16 2 C 0.03 0.76 1.79 -92.92 -0.17 0.59 16 3 H 0.05 1.24 7.19 -51.93 -0.37 0.86 16 4 C -0.50 -14.24 8.37 -34.44 -0.29 -14.53 16 5 H 0.07 2.26 6.77 -52.49 -0.36 1.90 16 6 C 0.06 1.62 5.29 -17.82 -0.09 1.53 16 7 N -0.90 -25.28 11.29 55.43 0.63 -24.66 16 8 Si 0.90 22.24 29.54 -169.99 -5.02 17.22 16 9 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 12 C 0.52 11.75 6.92 -10.99 -0.08 11.68 16 13 O -0.53 -13.45 10.89 5.55 0.06 -13.39 16 14 N -0.62 -10.91 2.97 -165.22 -0.49 -11.40 16 15 C 0.11 1.61 5.05 -3.71 -0.02 1.59 16 16 C -0.14 -1.64 6.08 -26.61 -0.16 -1.80 16 17 C -0.12 -1.20 5.88 -26.69 -0.16 -1.36 16 18 C -0.14 -1.56 4.86 -26.61 -0.13 -1.69 16 19 C 0.15 2.13 3.01 -67.60 -0.20 1.93 16 20 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 21 C -0.10 -1.58 2.48 -26.73 -0.07 -1.64 16 22 C -0.12 -1.47 5.59 -27.88 -0.16 -1.62 16 23 C 0.47 6.52 8.33 36.01 0.30 6.82 16 24 O -0.50 -9.30 16.69 -18.75 -0.31 -9.62 16 25 O -0.53 -5.46 13.42 -39.24 -0.53 -5.99 16 26 H 0.02 0.35 5.87 -51.93 -0.30 0.05 16 27 H 0.09 2.41 5.95 -51.93 -0.31 2.10 16 28 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.10 1.65 4.86 -51.93 -0.25 1.40 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.07 0.62 6.67 -51.93 -0.35 0.28 16 38 H 0.10 1.98 6.40 -51.93 -0.33 1.65 16 39 H 0.09 1.71 6.91 -51.93 -0.36 1.35 16 40 H 0.10 0.96 6.36 -51.93 -0.33 0.63 16 41 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 42 H 0.41 2.62 9.10 45.56 0.41 3.04 16 LS Contribution 326.11 15.07 4.91 4.91 Total: -1.00 -33.73 326.11 -7.13 -40.86 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -5.49 Total: 3.39 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: -0.90 Total: -1.33 kcal Atomic # 7 Polarization: -36.19 SS G_CDS: 0.13 Total: -36.06 kcal Atomic # 8 Polarization: -28.21 SS G_CDS: -0.78 Total: -28.99 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.73 -7.13 -40.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603118583.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.784 kcal (2) G-P(sol) polarization free energy of solvation -33.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds