Wall clock time and date at job start Tue Mar 31 2020 06:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47469 * 2 1 4 4 C 1.50697 * 109.47164 * 120.00651 * 2 1 3 5 5 H 1.07998 * 120.00452 * 119.99721 * 4 2 1 6 6 C 1.37883 * 119.99742 * 299.99739 * 4 2 1 7 7 N 1.31511 * 119.99662 * 180.02562 * 6 4 2 8 8 Si 1.86799 * 120.00055 * 359.97438 * 6 4 2 9 9 H 1.48490 * 109.47173 * 89.99862 * 8 6 4 10 10 H 1.48494 * 109.47058 * 210.00565 * 8 6 4 11 11 H 1.48505 * 109.46970 * 330.00224 * 8 6 4 12 12 C 1.50708 * 109.46667 * 240.00145 * 2 1 3 13 13 O 1.21277 * 119.99780 * 264.41134 * 12 2 1 14 14 N 1.34778 * 119.99886 * 84.41730 * 12 2 1 15 15 C 1.46923 * 120.62914 * 175.35047 * 14 12 2 16 16 C 1.53186 * 108.77573 * 233.58464 * 15 14 12 17 17 C 1.53037 * 109.31506 * 305.36622 * 16 15 14 18 18 C 1.53005 * 109.45933 * 181.38400 * 17 16 15 19 19 C 1.53003 * 109.46817 * 64.93417 * 18 17 16 20 20 C 1.50697 * 109.46736 * 179.97438 * 19 18 17 21 21 O 1.20822 * 120.00469 * 0.02562 * 20 19 18 22 22 O 1.34227 * 119.99910 * 179.97438 * 20 19 18 23 23 C 1.53043 * 109.53568 * 61.36611 * 17 16 15 24 24 C 1.46918 * 120.63025 * 355.33109 * 14 12 2 25 25 H 1.08997 * 109.47187 * 66.34066 * 1 2 3 26 26 H 1.09002 * 109.47373 * 186.34384 * 1 2 3 27 27 H 1.09000 * 109.46802 * 306.34109 * 1 2 3 28 28 H 0.97009 * 119.99518 * 179.97438 * 7 6 4 29 29 H 1.08998 * 109.58808 * 353.37691 * 15 14 12 30 30 H 1.09010 * 109.58409 * 113.79852 * 15 14 12 31 31 H 1.08997 * 109.49913 * 65.32444 * 16 15 14 32 32 H 1.09001 * 109.49868 * 185.41452 * 16 15 14 33 33 H 1.08999 * 109.46509 * 301.34440 * 17 16 15 34 34 H 1.09003 * 109.46975 * 184.93256 * 18 17 16 35 35 H 1.08996 * 109.47443 * 304.93495 * 18 17 16 36 36 H 1.08996 * 109.47381 * 299.99357 * 19 18 17 37 37 H 1.08995 * 109.47095 * 60.00390 * 19 18 17 38 38 H 0.96700 * 117.00106 * 180.02562 * 22 20 19 39 39 H 1.08998 * 109.49489 * 178.68106 * 23 17 16 40 40 H 1.09001 * 109.52566 * 58.60636 * 23 17 16 41 41 H 1.09002 * 109.59189 * 246.20189 * 24 14 12 42 42 H 1.09007 * 109.59059 * 6.48469 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1312 6 6 1.6992 -0.2395 2.4827 7 7 2.1380 -0.8593 3.5564 8 14 0.6259 1.2797 2.6542 9 1 -0.8019 0.8745 2.6993 10 1 0.9774 1.9951 3.9071 11 1 0.8493 2.1772 1.4923 12 6 2.0322 -0.7104 -1.2306 13 8 2.3307 -1.8845 -1.1735 14 7 2.1497 -0.0409 -2.3944 15 6 2.7326 -0.6907 -3.5762 16 6 3.8732 0.1832 -4.1072 17 6 3.3499 1.5986 -4.3621 18 6 4.4780 2.4654 -4.9251 19 6 4.8940 1.9326 -6.2977 20 6 6.0046 2.7868 -6.8525 21 8 6.4211 3.7250 -6.2154 22 8 6.5320 2.5046 -8.0542 23 6 2.8492 2.2034 -3.0484 24 6 1.6970 1.3523 -2.5055 25 1 -0.3633 0.4124 -0.9413 26 1 -0.3634 -1.0214 0.1136 27 1 -0.3633 0.6090 0.8278 28 1 1.9040 -0.5277 4.4375 29 1 3.1214 -1.6708 -3.2999 30 1 1.9688 -0.8021 -4.3460 31 1 4.6766 0.2194 -3.3715 32 1 4.2511 -0.2382 -5.0387 33 1 2.5301 1.5590 -5.0794 34 1 4.1308 3.4939 -5.0245 35 1 5.3323 2.4341 -4.2490 36 1 5.2411 0.9042 -6.1983 37 1 4.0396 1.9640 -6.9738 38 1 7.2425 3.0805 -8.3680 39 1 2.4983 3.2199 -3.2264 40 1 3.6620 2.2211 -2.3224 41 1 0.8488 1.4077 -3.1879 42 1 1.4001 1.7196 -1.5230 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603119412.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:04 Heat of formation + Delta-G solvation = -142.210862 kcal Electronic energy + Delta-G solvation = -22811.925089 eV Core-core repulsion = 19370.372491 eV Total energy + Delta-G solvation = -3441.552597 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.61490 -39.74906 -37.60459 -36.46791 -34.46598 -33.89458 -31.58663 -31.12363 -30.43873 -26.57709 -25.16925 -23.90297 -23.24569 -22.00920 -20.96567 -20.12263 -18.52059 -18.30523 -16.99117 -16.78870 -16.48341 -15.83848 -15.49902 -14.86687 -14.67523 -14.47879 -14.09576 -13.75888 -13.56023 -13.29006 -13.03211 -12.88960 -12.43682 -12.35869 -12.16031 -12.01838 -11.86142 -11.53642 -11.38590 -11.17890 -10.98737 -10.93557 -10.83169 -10.59217 -10.44810 -10.36848 -10.25634 -9.64190 -9.10348 -8.64651 -8.56525 -8.15750 -6.05686 -4.05535 1.88749 2.71598 3.24062 3.29465 3.36249 3.52987 3.58111 4.37543 4.39231 4.55929 4.63723 4.80629 4.91496 5.11163 5.13094 5.24334 5.27938 5.36670 5.38274 5.47716 5.64191 5.67584 5.77057 5.80599 5.93040 5.94630 6.01556 6.10820 6.13852 6.16672 6.18712 6.35571 6.40904 6.48985 6.68258 7.03711 7.18241 7.55571 7.56689 8.03063 8.53726 9.07885 9.11337 9.53223 11.07480 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.028164 B = 0.003551 C = 0.003418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.927892 B = 7884.295654 C = 8188.832744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.003 4.003 3 H 0.047 0.953 4 C -0.504 4.504 5 H 0.088 0.912 6 C 0.071 3.929 7 N -0.896 5.896 8 Si 0.885 3.115 9 H -0.278 1.278 10 H -0.295 1.295 11 H -0.267 1.267 12 C 0.533 3.467 13 O -0.535 6.535 14 N -0.627 5.627 15 C 0.112 3.888 16 C -0.133 4.133 17 C -0.085 4.085 18 C -0.105 4.105 19 C -0.116 4.116 20 C 0.476 3.524 21 O -0.516 6.516 22 O -0.521 6.521 23 C -0.131 4.131 24 C 0.107 3.893 25 H 0.034 0.966 26 H 0.061 0.939 27 H 0.047 0.953 28 H 0.265 0.735 29 H 0.089 0.911 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.109 0.891 37 H 0.106 0.894 38 H 0.409 0.591 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.061 0.939 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.536 8.992 -22.504 24.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.024 4.024 3 H 0.065 0.935 4 C -0.542 4.542 5 H 0.106 0.894 6 C -0.131 4.131 7 N -0.534 5.534 8 Si 0.715 3.285 9 H -0.205 1.205 10 H -0.223 1.223 11 H -0.192 1.192 12 C 0.324 3.676 13 O -0.409 6.409 14 N -0.363 5.363 15 C -0.011 4.011 16 C -0.171 4.171 17 C -0.103 4.103 18 C -0.142 4.142 19 C -0.153 4.153 20 C 0.319 3.681 21 O -0.404 6.404 22 O -0.333 6.333 23 C -0.170 4.170 24 C -0.016 4.016 25 H 0.053 0.947 26 H 0.080 0.920 27 H 0.066 0.934 28 H 0.075 0.925 29 H 0.107 0.893 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.127 0.873 37 H 0.124 0.876 38 H 0.267 0.733 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.079 0.921 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.498 8.321 -21.920 23.579 hybrid contribution -0.087 1.318 -0.062 1.322 sum 2.411 9.639 -21.982 24.123 Atomic orbital electron populations 1.22100 0.97075 1.02034 0.98924 1.19321 0.93341 0.97253 0.92533 0.93515 1.20889 1.32204 1.13761 0.87334 0.89384 1.24968 0.95784 0.96624 0.95714 1.69885 1.45457 1.40176 0.97880 0.86904 0.80832 0.83770 0.77018 1.20467 1.22266 1.19249 1.21295 0.75780 0.87067 0.83486 1.90565 1.49206 1.16674 1.84481 1.48297 1.63717 1.13192 1.11130 1.21416 0.94789 0.97415 0.87503 1.22067 0.98844 0.94958 1.01227 1.21147 0.97210 0.94735 0.97234 1.21517 0.99325 0.99715 0.93652 1.21505 0.95366 0.99990 0.98433 1.23713 0.82600 0.83512 0.78286 1.90741 1.60498 1.29833 1.59284 1.84551 1.53039 1.59527 1.36173 1.21980 0.99291 0.98823 0.96863 1.21713 0.95747 0.81515 1.02630 0.94742 0.92021 0.93425 0.92544 0.89258 0.92476 0.91186 0.91115 0.90812 0.90878 0.90739 0.87285 0.87595 0.73260 0.90882 0.90960 0.92094 0.88809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 8.33 37.16 0.31 -2.73 16 2 C 0.00 -0.07 1.37 -92.92 -0.13 -0.20 16 3 H 0.05 1.05 5.56 -51.93 -0.29 0.76 16 4 C -0.50 -14.63 8.91 -34.44 -0.31 -14.94 16 5 H 0.09 2.92 7.26 -52.49 -0.38 2.54 16 6 C 0.07 2.05 5.45 -17.82 -0.10 1.95 16 7 N -0.90 -27.77 13.96 55.43 0.77 -26.99 16 8 Si 0.88 21.30 24.31 -169.99 -4.13 17.17 16 9 H -0.28 -6.51 6.93 56.52 0.39 -6.12 16 10 H -0.30 -7.15 7.11 56.52 0.40 -6.75 16 11 H -0.27 -5.90 6.53 56.52 0.37 -5.53 16 12 C 0.53 11.83 6.80 -10.98 -0.07 11.76 16 13 O -0.53 -13.89 15.23 5.56 0.08 -13.81 16 14 N -0.63 -10.47 2.97 -172.77 -0.51 -10.98 16 15 C 0.11 1.53 6.42 -3.72 -0.02 1.51 16 16 C -0.13 -1.39 5.14 -26.62 -0.14 -1.53 16 17 C -0.08 -0.77 2.15 -90.58 -0.19 -0.96 16 18 C -0.10 -0.88 3.97 -26.73 -0.11 -0.99 16 19 C -0.12 -0.78 5.57 -27.88 -0.16 -0.93 16 20 C 0.48 4.09 8.33 36.00 0.30 4.39 16 21 O -0.52 -6.26 16.74 -18.75 -0.31 -6.57 16 22 O -0.52 -3.35 13.42 -39.25 -0.53 -3.88 16 23 C -0.13 -1.43 5.36 -26.61 -0.14 -1.58 16 24 C 0.11 1.43 5.78 -3.72 -0.02 1.41 16 25 H 0.03 0.59 7.39 -51.93 -0.38 0.21 16 26 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 27 H 0.05 1.02 3.47 -51.93 -0.18 0.84 16 28 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 29 H 0.09 1.42 7.03 -51.93 -0.37 1.05 16 30 H 0.06 0.67 8.14 -51.92 -0.42 0.25 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.07 0.56 6.50 -51.93 -0.34 0.23 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 35 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 36 H 0.11 0.63 6.53 -51.93 -0.34 0.29 16 37 H 0.11 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.41 1.05 9.10 45.56 0.41 1.47 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.09 1.37 5.15 -51.92 -0.27 1.11 16 LS Contribution 328.41 15.07 4.95 4.95 Total: -1.00 -36.18 328.41 -5.99 -42.17 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -5.53 Total: 0.79 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: -0.78 Total: -2.85 kcal Atomic # 7 Polarization: -38.23 SS G_CDS: 0.26 Total: -37.97 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: -0.76 Total: -24.26 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.13 Total: 17.17 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -36.18 -5.99 -42.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603119412.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.042 kcal (2) G-P(sol) polarization free energy of solvation -36.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds