Wall clock time and date at job start Tue Mar 31 2020 05:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.46985 * 2 1 4 4 H 1.09001 * 109.47145 * 305.00117 * 3 2 1 5 5 C 1.50703 * 109.47063 * 184.99958 * 3 2 1 6 6 H 1.07997 * 119.99923 * 239.99803 * 5 3 2 7 7 C 1.37885 * 119.99724 * 60.00177 * 5 3 2 8 8 N 1.31507 * 119.99982 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99648 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47493 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47163 * 120.00020 * 9 7 5 12 12 H 1.48506 * 109.46910 * 239.99754 * 9 7 5 13 13 N 1.46503 * 109.47250 * 65.00088 * 3 2 1 14 14 C 1.34776 * 119.99902 * 275.00060 * 13 3 2 15 15 O 1.21279 * 120.00099 * 359.97438 * 14 13 3 16 16 C 1.50696 * 120.00039 * 180.02562 * 14 13 3 17 17 H 1.08997 * 109.47385 * 59.99682 * 16 14 13 18 18 C 1.50706 * 109.46754 * 299.99932 * 16 14 13 19 19 O 1.20825 * 119.99859 * 239.99451 * 18 16 14 20 20 O 1.34224 * 120.00295 * 60.00410 * 18 16 14 21 21 C 1.52996 * 109.47216 * 179.97438 * 16 14 13 22 22 C 1.54268 * 110.03112 * 297.90391 * 21 16 14 23 23 C 1.54967 * 104.16113 * 217.13551 * 22 21 16 24 24 C 1.54893 * 102.77536 * 37.89087 * 23 22 21 25 25 C 1.53873 * 110.03450 * 180.69001 * 21 16 14 26 26 H 1.09002 * 109.47246 * 299.99973 * 1 2 3 27 27 H 1.08998 * 109.47455 * 60.00306 * 1 2 3 28 28 H 1.09010 * 109.47393 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47246 * 240.00027 * 2 1 3 30 30 H 1.08998 * 109.47455 * 119.99694 * 2 1 3 31 31 H 0.97005 * 119.99929 * 180.02562 * 8 7 5 32 32 H 0.96996 * 119.99623 * 95.00145 * 13 3 2 33 33 H 0.96700 * 117.00196 * 179.97438 * 20 18 16 34 34 H 1.08999 * 110.01560 * 59.29679 * 21 16 14 35 35 H 1.09002 * 110.48940 * 335.78417 * 22 21 16 36 36 H 1.09001 * 110.48318 * 98.43154 * 22 21 16 37 37 H 1.08994 * 110.71935 * 279.57648 * 23 22 21 38 38 H 1.08997 * 110.92030 * 156.29574 * 23 22 21 39 39 H 1.09002 * 110.48496 * 203.40727 * 24 23 22 40 40 H 1.08997 * 110.59676 * 80.81683 * 24 23 22 41 41 H 1.09002 * 110.03267 * 238.57298 * 25 21 16 42 42 H 1.09011 * 110.02918 * 359.94745 * 25 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1471 1.8889 0.6523 7 6 4.1432 0.8784 -1.2281 8 7 3.4061 0.3366 -2.1729 9 14 6.0049 0.8800 -1.3812 10 1 6.5988 1.5452 -0.1937 11 1 6.4961 -0.5190 -1.4627 12 1 6.3999 1.6157 -2.6092 13 7 1.6524 2.0975 1.2518 14 6 0.4350 2.6644 1.3670 15 8 -0.3394 2.6327 0.4342 16 6 0.0366 3.3386 2.6544 17 1 0.7280 4.1541 2.8666 18 6 0.0800 2.3375 3.7801 19 8 -0.9213 2.0939 4.4109 20 8 1.2310 1.7166 4.0820 21 6 -1.3822 3.8953 2.5207 22 6 -1.4290 4.9607 1.4060 23 6 -2.4140 6.0293 1.9438 24 6 -2.0795 6.0733 3.4556 25 6 -1.7961 4.6022 3.8233 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8292 -0.0618 -2.9495 32 1 2.2719 2.1232 1.9977 33 1 1.2096 1.0830 4.8122 34 1 -2.0799 3.0886 2.2958 35 1 -0.4414 5.3955 1.2521 36 1 -1.8045 4.5268 0.4792 37 1 -3.4461 5.7168 1.7855 38 1 -2.2295 6.9977 1.4790 39 1 -2.9296 6.4515 4.0235 40 1 -1.1978 6.6883 3.6354 41 1 -2.6950 4.1391 4.2301 42 1 -0.9863 4.5479 4.5511 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603516315.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:21 Heat of formation + Delta-G solvation = -154.704713 kcal Electronic energy + Delta-G solvation = -23834.487348 eV Core-core repulsion = 20392.392976 eV Total energy + Delta-G solvation = -3442.094371 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.84142 -38.94726 -37.75236 -36.01859 -35.06839 -32.57319 -31.90630 -30.64879 -28.56182 -27.36115 -26.18117 -23.14834 -22.30239 -20.80006 -20.44009 -19.38902 -19.29316 -18.13147 -17.39352 -16.78610 -15.96003 -15.56708 -15.39166 -14.88922 -14.70646 -14.32377 -14.09338 -13.34494 -13.23768 -12.97949 -12.70728 -12.42559 -11.90054 -11.58927 -11.51703 -11.31479 -11.19294 -11.04541 -11.00884 -10.97919 -10.88830 -10.82849 -10.58899 -10.45124 -10.36211 -10.30094 -10.17720 -9.64629 -9.08165 -9.02257 -8.51966 -7.85218 -6.13974 -4.23122 2.13237 2.81406 3.22599 3.30776 3.33211 3.51158 3.94429 4.34485 4.47179 4.74313 4.76791 5.07143 5.16383 5.19330 5.39858 5.48443 5.54057 5.69798 5.72014 5.76060 5.89007 5.97056 6.06357 6.16007 6.37085 6.37783 6.42851 6.47024 6.48958 6.59615 6.63712 7.01950 7.16684 7.33534 7.40501 7.60376 7.71133 7.87576 7.88055 8.15786 8.61766 8.74530 9.06091 9.44038 10.91393 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.022112 B = 0.004797 C = 0.004609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.984007 B = 5836.019024 C = 6073.120444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.050 0.950 5 C -0.533 4.533 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.698 5.698 14 C 0.508 3.492 15 O -0.530 6.530 16 C -0.102 4.102 17 H 0.128 0.872 18 C 0.490 3.510 19 O -0.507 6.507 20 O -0.510 6.510 21 C -0.057 4.057 22 C -0.109 4.109 23 C -0.126 4.126 24 C -0.127 4.127 25 C -0.112 4.112 26 H 0.035 0.965 27 H 0.051 0.949 28 H 0.022 0.978 29 H 0.100 0.900 30 H 0.031 0.969 31 H 0.264 0.736 32 H 0.394 0.606 33 H 0.411 0.589 34 H 0.086 0.914 35 H 0.064 0.936 36 H 0.082 0.918 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.069 0.931 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.365 7.232 11.465 14.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.068 0.932 5 C -0.571 4.571 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.346 5.346 14 C 0.291 3.709 15 O -0.408 6.408 16 C -0.124 4.124 17 H 0.145 0.855 18 C 0.332 3.668 19 O -0.394 6.394 20 O -0.321 6.321 21 C -0.076 4.076 22 C -0.147 4.147 23 C -0.164 4.164 24 C -0.165 4.165 25 C -0.149 4.149 26 H 0.054 0.946 27 H 0.070 0.930 28 H 0.041 0.959 29 H 0.118 0.882 30 H 0.050 0.950 31 H 0.074 0.926 32 H 0.228 0.772 33 H 0.270 0.730 34 H 0.104 0.896 35 H 0.082 0.918 36 H 0.101 0.899 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.087 0.913 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.138 7.297 10.438 14.600 hybrid contribution 1.416 -0.565 0.838 1.740 sum -5.722 6.732 11.276 14.325 Atomic orbital electron populations 1.21834 0.98407 0.98075 1.01065 1.21936 0.92508 0.99840 1.02330 1.18828 0.94322 0.89179 0.80816 0.93184 1.21262 0.90652 1.38950 1.06241 0.91979 1.24879 0.98582 0.94799 0.95384 1.69901 1.35036 1.37651 1.09374 0.86409 0.84902 0.77769 0.78111 1.19725 1.20904 1.20905 1.46562 1.14300 1.54916 1.18809 1.19603 0.83434 0.80133 0.87778 1.90690 1.51284 1.59173 1.39609 1.21645 1.02092 0.96894 0.91788 0.85477 1.23008 0.80563 0.79852 0.83382 1.90704 1.35436 1.62207 1.51070 1.84533 1.37282 1.55539 1.54783 1.21421 0.92065 0.98567 0.95549 1.22377 0.99482 0.94501 0.98311 1.22538 0.99612 0.98966 0.95258 1.22410 1.00927 0.96660 0.96465 1.22177 1.01604 0.94684 0.96466 0.94616 0.93036 0.95859 0.88224 0.95018 0.92620 0.77170 0.72977 0.89584 0.91769 0.89917 0.91608 0.91728 0.92008 0.91862 0.91267 0.92409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 8.51 37.16 0.32 -2.71 16 2 C -0.13 -3.05 5.45 -26.73 -0.15 -3.20 16 3 C 0.27 6.59 2.24 -69.08 -0.15 6.44 16 4 H 0.05 1.41 7.58 -51.93 -0.39 1.02 16 5 C -0.53 -13.72 8.73 -34.44 -0.30 -14.02 16 6 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -24.27 11.29 55.43 0.63 -23.64 16 9 Si 0.90 20.25 29.54 -169.99 -5.02 15.23 16 10 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 12 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 13 N -0.70 -13.94 4.79 -54.93 -0.26 -14.20 16 14 C 0.51 9.51 5.46 -10.99 -0.06 9.45 16 15 O -0.53 -11.41 11.64 5.56 0.06 -11.35 16 16 C -0.10 -1.48 1.94 -92.92 -0.18 -1.66 16 17 H 0.13 1.55 8.13 -51.93 -0.42 1.13 16 18 C 0.49 6.94 7.01 36.01 0.25 7.20 16 19 O -0.51 -8.01 15.47 -18.75 -0.29 -8.30 16 20 O -0.51 -6.04 11.88 -39.24 -0.47 -6.51 16 21 C -0.06 -0.80 1.72 -89.50 -0.15 -0.95 16 22 C -0.11 -1.47 5.15 -25.03 -0.13 -1.60 16 23 C -0.13 -1.37 6.91 -24.69 -0.17 -1.54 16 24 C -0.13 -1.29 6.83 -25.07 -0.17 -1.46 16 25 C -0.11 -1.33 5.11 -25.61 -0.13 -1.46 16 26 H 0.03 0.77 5.65 -51.93 -0.29 0.48 16 27 H 0.05 1.21 7.85 -51.93 -0.41 0.80 16 28 H 0.02 0.46 8.14 -51.92 -0.42 0.04 16 29 H 0.10 2.64 5.95 -51.93 -0.31 2.34 16 30 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 32 H 0.39 7.12 7.21 -40.82 -0.29 6.83 16 33 H 0.41 3.07 9.10 45.56 0.41 3.48 16 34 H 0.09 1.38 8.08 -51.93 -0.42 0.96 16 35 H 0.06 0.87 7.84 -51.93 -0.41 0.46 16 36 H 0.08 1.27 7.43 -51.93 -0.39 0.89 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.06 0.68 6.95 -51.92 -0.36 0.32 16 LS Contribution 331.08 15.07 4.99 4.99 Total: -1.00 -29.97 331.08 -7.26 -37.23 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -5.78 Total: 10.41 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: -1.12 Total: -3.86 kcal Atomic # 7 Polarization: -38.21 SS G_CDS: 0.36 Total: -37.84 kcal Atomic # 8 Polarization: -25.47 SS G_CDS: -0.69 Total: -26.16 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.97 -7.26 -37.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603516315.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.477 kcal (2) G-P(sol) polarization free energy of solvation -29.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds