Wall clock time and date at job start Tue Mar 31 2020 06:35:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46492 * 109.47572 * 2 1 4 4 C 1.37101 * 120.00003 * 277.55364 * 3 2 1 5 5 H 1.07995 * 120.00286 * 181.14789 * 4 3 2 6 6 C 1.38947 * 119.99792 * 1.14987 * 4 3 2 7 7 N 1.31414 * 120.00290 * 8.89152 * 6 4 3 8 8 Si 1.86804 * 119.99906 * 188.89467 * 6 4 3 9 9 H 1.48497 * 109.47143 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47029 * 119.99965 * 8 6 4 11 11 H 1.48506 * 109.47001 * 239.99403 * 8 6 4 12 12 C 1.34775 * 120.00428 * 97.55225 * 3 2 1 13 13 O 1.21296 * 120.00429 * 175.88785 * 12 3 2 14 14 C 1.50701 * 119.99791 * 355.89167 * 12 3 2 15 15 C 1.50699 * 115.55130 * 291.45860 * 14 12 3 16 16 O 1.20827 * 119.99952 * 98.46462 * 15 14 12 17 17 O 1.34228 * 120.00081 * 278.46853 * 15 14 12 18 18 C 1.53005 * 117.49874 * 145.78751 * 14 12 3 19 19 C 1.52997 * 117.49671 * 0.02562 * 18 14 12 20 20 C 1.52998 * 117.49600 * 145.01984 * 18 14 12 21 21 C 1.53001 * 117.49974 * 77.13020 * 14 12 3 22 22 C 1.53002 * 117.49858 * 214.98258 * 21 14 12 23 23 C 1.52999 * 117.49666 * 359.97438 * 21 14 12 24 24 H 1.09001 * 109.47485 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46616 * 300.00203 * 1 2 3 26 26 H 1.08998 * 109.47249 * 59.99615 * 1 2 3 27 27 H 1.09001 * 109.47054 * 239.99525 * 2 1 3 28 28 H 1.09007 * 109.47477 * 120.00270 * 2 1 3 29 29 H 0.96999 * 119.99960 * 179.97438 * 7 6 4 30 30 H 0.96697 * 116.99741 * 185.02640 * 17 15 14 31 31 H 1.08999 * 109.47516 * 101.40853 * 19 18 14 32 32 H 1.09006 * 109.46716 * 221.40360 * 19 18 14 33 33 H 1.08998 * 109.47194 * 341.39974 * 19 18 14 34 34 H 1.09000 * 109.47494 * 8.61152 * 20 18 14 35 35 H 1.09000 * 109.47181 * 128.61238 * 20 18 14 36 36 H 1.09004 * 109.47501 * 248.61188 * 20 18 14 37 37 H 1.08993 * 109.47430 * 79.11247 * 22 21 14 38 38 H 1.09002 * 109.46899 * 199.11659 * 22 21 14 39 39 H 1.08998 * 109.46826 * 319.11159 * 22 21 14 40 40 H 1.08999 * 109.47168 * 58.57616 * 23 21 14 41 41 H 1.09007 * 109.47269 * 178.56960 * 23 21 14 42 42 H 1.08994 * 109.47414 * 298.57323 * 23 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.0998 2.0794 -1.1770 5 1 2.4773 3.0912 -1.1796 6 6 1.6965 1.4853 -2.3666 7 7 1.0772 0.3264 -2.3454 8 14 2.0348 2.3339 -3.9960 9 1 2.7394 3.6174 -3.7488 10 1 2.8833 1.4580 -4.8434 11 1 0.7499 2.6009 -4.6912 12 6 2.3877 1.9654 1.1570 13 8 2.8619 3.0817 1.1484 14 6 2.2116 1.2315 2.4614 15 6 0.7857 1.0194 2.9005 16 8 0.2408 -0.0389 2.6932 17 8 0.1209 2.0061 3.5219 18 6 3.2588 1.4674 3.5517 19 6 4.4043 2.4307 3.2343 20 6 2.7782 1.4694 5.0042 21 6 3.2248 0.1356 2.7979 22 6 2.7129 -1.0916 3.5548 23 6 4.3390 -0.1318 1.7840 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 0.7954 -0.0881 -3.1759 30 1 -0.7645 1.7994 3.8511 31 1 4.2082 3.3953 3.7025 32 1 5.3390 2.0232 3.6197 33 1 4.4820 2.5598 2.1548 34 1 1.7392 1.1424 5.0437 35 1 3.3955 0.7900 5.5921 36 1 2.8576 2.4772 5.4120 37 1 2.2102 -1.7637 2.8594 38 1 3.5529 -1.6095 4.0177 39 1 2.0110 -0.7758 4.3265 40 1 4.9139 0.7808 1.6268 41 1 4.9961 -0.9141 2.1640 42 1 3.9009 -0.4526 0.8389 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603724039.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:04 Heat of formation + Delta-G solvation = -76.923905 kcal Electronic energy + Delta-G solvation = -25335.972392 eV Core-core repulsion = 21897.250850 eV Total energy + Delta-G solvation = -3438.721543 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.06922 -38.75013 -37.29967 -35.79881 -34.99920 -31.75776 -30.76461 -29.28568 -28.58168 -28.47968 -25.90798 -24.97778 -23.29221 -22.07635 -21.02976 -18.47821 -17.92999 -17.17612 -16.85407 -16.46422 -15.87164 -15.14013 -14.53223 -14.32012 -13.98678 -13.80563 -13.22195 -13.10422 -13.04967 -12.69159 -12.35861 -12.12267 -12.05498 -11.93651 -11.85411 -11.70693 -11.57855 -11.42797 -11.25288 -11.02675 -10.85071 -10.60297 -10.39494 -10.35457 -10.24633 -9.97775 -9.77341 -9.33821 -9.15456 -8.76822 -8.30834 -7.74711 -6.20695 -3.82528 2.55192 3.09537 3.23696 3.24711 3.30602 3.57084 3.99915 4.13787 4.62201 4.81795 5.00569 5.20280 5.26507 5.32794 5.37533 5.71679 5.76721 5.82602 5.88423 5.93073 6.09177 6.14699 6.17118 6.21308 6.27292 6.30460 6.35544 6.46284 6.59715 6.67179 6.80175 6.88458 6.93664 7.01663 7.13816 7.42739 7.66101 7.86356 8.06574 8.31419 8.52318 9.14833 9.42762 9.95211 10.64478 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.021273 B = 0.007252 C = 0.006678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.921167 B = 3859.818410 C = 4191.657382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.112 3.888 3 N -0.426 5.426 4 C -0.295 4.295 5 H 0.106 0.894 6 C 0.023 3.977 7 N -0.869 5.869 8 Si 0.930 3.070 9 H -0.268 1.268 10 H -0.280 1.280 11 H -0.282 1.282 12 C 0.475 3.525 13 O -0.577 6.577 14 C -0.129 4.129 15 C 0.524 3.476 16 O -0.493 6.493 17 O -0.509 6.509 18 C -0.077 4.077 19 C -0.120 4.120 20 C -0.114 4.114 21 C -0.078 4.078 22 C -0.115 4.115 23 C -0.125 4.125 24 H 0.032 0.968 25 H 0.022 0.978 26 H 0.079 0.921 27 H 0.116 0.884 28 H 0.041 0.959 29 H 0.264 0.736 30 H 0.401 0.599 31 H 0.058 0.942 32 H 0.049 0.951 33 H 0.092 0.908 34 H 0.052 0.948 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.061 0.939 39 H 0.054 0.946 40 H 0.068 0.932 41 H 0.061 0.939 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.155 -3.155 10.386 11.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.011 4.011 3 N -0.143 5.143 4 C -0.423 4.423 5 H 0.124 0.876 6 C -0.178 4.178 7 N -0.511 5.511 8 Si 0.757 3.243 9 H -0.193 1.193 10 H -0.206 1.206 11 H -0.208 1.208 12 C 0.262 3.738 13 O -0.463 6.463 14 C -0.133 4.133 15 C 0.366 3.634 16 O -0.379 6.379 17 O -0.320 6.320 18 C -0.077 4.077 19 C -0.177 4.177 20 C -0.171 4.171 21 C -0.079 4.079 22 C -0.172 4.172 23 C -0.182 4.182 24 H 0.051 0.949 25 H 0.040 0.960 26 H 0.098 0.902 27 H 0.133 0.867 28 H 0.059 0.941 29 H 0.075 0.925 30 H 0.259 0.741 31 H 0.077 0.923 32 H 0.068 0.932 33 H 0.111 0.889 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.087 0.913 41 H 0.080 0.920 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.534 -2.953 9.956 10.689 hybrid contribution -0.928 0.057 -0.630 1.123 sum 1.606 -2.896 9.326 9.896 Atomic orbital electron populations 1.22103 0.96685 0.99545 1.00691 1.21977 0.94993 0.82685 1.01459 1.43892 1.52917 1.12264 1.05183 1.19899 1.39963 0.99360 0.83053 0.87640 1.25309 0.96183 0.96541 0.99767 1.70212 1.37242 1.16661 1.26955 0.85789 0.78137 0.79289 0.81088 1.19269 1.20627 1.20813 1.18157 0.86772 0.86495 0.82387 1.90482 1.50215 1.19875 1.85732 1.21285 0.86343 1.06621 0.99094 1.21887 0.87274 0.80724 0.73515 1.90688 1.68386 1.27355 1.51520 1.84632 1.33828 1.44007 1.69543 1.21831 0.96883 0.97334 0.91694 1.21551 0.94184 0.96857 1.05078 1.21401 1.00179 1.02284 0.93193 1.21858 0.96421 0.90189 0.99443 1.21402 1.00308 0.95916 0.99537 1.21515 0.96295 1.02338 0.98069 0.94897 0.95953 0.90237 0.86664 0.94064 0.92458 0.74148 0.92282 0.93192 0.88923 0.92942 0.91879 0.91571 0.91082 0.92055 0.92742 0.91267 0.91988 0.90888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.14 8.54 37.16 0.32 -2.82 16 2 C 0.11 2.65 3.93 -4.05 -0.02 2.64 16 3 N -0.43 -10.92 2.64 -114.82 -0.30 -11.22 16 4 C -0.29 -8.06 9.52 -14.93 -0.14 -8.20 16 5 H 0.11 3.02 7.18 -52.49 -0.38 2.65 16 6 C 0.02 0.60 5.31 -17.47 -0.09 0.51 16 7 N -0.87 -22.14 7.35 55.50 0.41 -21.73 16 8 Si 0.93 20.43 29.56 -169.99 -5.03 15.41 16 9 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 10 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 11 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 12 C 0.48 11.66 5.35 -10.99 -0.06 11.60 16 13 O -0.58 -15.56 13.76 5.54 0.08 -15.49 16 14 C -0.13 -2.58 1.27 -156.81 -0.20 -2.78 16 15 C 0.52 10.07 3.81 36.01 0.14 10.20 16 16 O -0.49 -9.77 12.52 -18.75 -0.23 -10.00 16 17 O -0.51 -8.47 12.64 -39.25 -0.50 -8.96 16 18 C -0.08 -1.29 2.70 -154.47 -0.42 -1.71 16 19 C -0.12 -2.03 7.71 37.16 0.29 -1.74 16 20 C -0.11 -1.56 8.30 37.16 0.31 -1.25 16 21 C -0.08 -1.32 1.59 -154.47 -0.25 -1.57 16 22 C -0.11 -1.67 7.91 37.16 0.29 -1.38 16 23 C -0.13 -2.09 8.57 37.16 0.32 -1.77 16 24 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.02 0.52 4.94 -51.93 -0.26 0.26 16 26 H 0.08 2.07 6.16 -51.93 -0.32 1.75 16 27 H 0.12 2.93 5.72 -51.93 -0.30 2.63 16 28 H 0.04 0.91 3.95 -51.93 -0.20 0.71 16 29 H 0.26 6.40 8.31 -40.82 -0.34 6.06 16 30 H 0.40 4.47 9.10 45.56 0.41 4.89 16 31 H 0.06 0.97 8.09 -51.93 -0.42 0.55 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.09 1.88 4.31 -51.93 -0.22 1.65 16 34 H 0.05 0.73 5.20 -51.93 -0.27 0.46 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.07 0.85 8.04 -51.93 -0.42 0.43 16 37 H 0.07 1.11 7.87 -51.93 -0.41 0.70 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.05 0.78 5.63 -51.93 -0.29 0.49 16 40 H 0.07 1.20 5.76 -51.93 -0.30 0.91 16 41 H 0.06 0.84 8.10 -51.92 -0.42 0.42 16 42 H 0.07 1.36 6.26 -51.93 -0.33 1.03 16 LS Contribution 311.48 15.07 4.69 4.69 Total: -1.00 -30.44 311.48 -5.33 -35.78 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -4.94 Total: 9.79 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: 0.49 Total: 1.73 kcal Atomic # 7 Polarization: -33.05 SS G_CDS: 0.10 Total: -32.95 kcal Atomic # 8 Polarization: -33.80 SS G_CDS: -0.65 Total: -34.45 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.03 Total: 15.41 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.44 -5.33 -35.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603724039.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.145 kcal (2) G-P(sol) polarization free energy of solvation -30.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds