Wall clock time and date at job start Tue Mar 31 2020 06:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46502 * 109.47113 * 2 1 4 4 C 1.46491 * 120.00222 * 269.54801 * 3 2 1 5 5 C 1.50708 * 109.47408 * 270.00199 * 4 3 2 6 6 H 1.07996 * 119.99182 * 359.97438 * 5 4 3 7 7 C 1.37869 * 120.00183 * 180.02562 * 5 4 3 8 8 N 1.31522 * 120.00155 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99951 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46733 * 90.00046 * 9 7 5 11 11 H 1.48501 * 109.47055 * 209.99802 * 9 7 5 12 12 H 1.48494 * 109.47073 * 329.99926 * 9 7 5 13 13 C 1.34778 * 119.99713 * 89.54595 * 3 2 1 14 14 O 1.21283 * 120.00065 * 186.14471 * 13 3 2 15 15 C 1.50696 * 120.00055 * 6.15500 * 13 3 2 16 16 H 1.08998 * 109.47529 * 332.68041 * 15 13 3 17 17 C 1.50707 * 109.47436 * 92.68203 * 15 13 3 18 18 O 1.20820 * 120.00015 * 83.43459 * 17 15 13 19 19 O 1.34229 * 119.99738 * 263.43142 * 17 15 13 20 20 C 1.53005 * 109.47062 * 212.67845 * 15 13 3 21 21 C 1.54264 * 110.03090 * 177.90467 * 20 15 13 22 22 C 1.54966 * 104.15883 * 217.13831 * 21 20 15 23 23 C 1.54885 * 102.77723 * 37.88996 * 22 21 20 24 24 C 1.53876 * 110.03062 * 60.69148 * 20 15 13 25 25 H 1.08994 * 109.46985 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47293 * 300.00036 * 1 2 3 27 27 H 1.09003 * 109.47047 * 60.00268 * 1 2 3 28 28 H 1.08997 * 109.47293 * 239.99964 * 2 1 3 29 29 H 1.08998 * 109.46968 * 120.00204 * 2 1 3 30 30 H 1.09004 * 109.47552 * 29.99769 * 4 3 2 31 31 H 1.08995 * 109.47521 * 149.99975 * 4 3 2 32 32 H 0.96998 * 120.00078 * 179.97438 * 8 7 5 33 33 H 0.96694 * 117.00041 * 179.97438 * 19 17 15 34 34 H 1.08993 * 110.02002 * 299.29924 * 20 15 13 35 35 H 1.08997 * 110.48843 * 335.78549 * 21 20 15 36 36 H 1.09001 * 110.48443 * 98.43422 * 21 20 15 37 37 H 1.09008 * 110.72192 * 279.57726 * 22 21 20 38 38 H 1.09003 * 110.76484 * 156.22669 * 22 21 20 39 39 H 1.09003 * 110.49029 * 203.40491 * 23 22 21 40 40 H 1.09005 * 110.59936 * 80.81749 * 23 22 21 41 41 H 1.08995 * 110.03355 * 238.57269 * 24 20 15 42 42 H 1.09010 * 110.03262 * 359.95085 * 24 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2719 2.0685 -1.2686 5 6 3.6985 1.8306 -1.6925 6 1 4.3509 1.2280 -1.0780 7 6 4.1708 2.3830 -2.8641 8 7 3.3763 3.1172 -3.6121 9 14 5.9392 2.0886 -3.3891 10 1 6.0092 0.8657 -4.2287 11 1 6.4240 3.2543 -4.1710 12 1 6.7901 1.9118 -2.1850 13 6 2.2342 2.0196 1.1672 14 8 2.5307 3.1956 1.1694 15 6 2.1074 1.2721 2.4695 16 1 1.4068 0.4461 2.3477 17 6 3.4555 0.7320 2.8722 18 8 4.2398 1.4404 3.4577 19 8 3.7848 -0.5361 2.5803 20 6 1.5936 2.2210 3.5543 21 6 1.4089 1.4562 4.8812 22 6 0.1332 2.0785 5.5030 23 6 -0.7700 2.3148 4.2672 24 6 0.2089 2.7671 3.1641 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 1.5968 1.6824 -2.0324 31 1 2.1040 3.1380 -1.1423 32 1 3.7087 3.5062 -4.4361 33 1 4.6606 -0.8374 2.8585 34 1 2.2943 3.0444 3.6923 35 1 1.2610 0.3931 4.6914 36 1 2.2677 1.6123 5.5341 37 1 0.3658 3.0217 5.9975 38 1 -0.3370 1.3825 6.1978 39 1 -1.5009 3.0969 4.4727 40 1 -1.2719 1.3918 3.9769 41 1 0.2374 3.8555 3.1135 42 1 -0.0967 2.3567 2.2015 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603736416.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:55 Heat of formation + Delta-G solvation = -146.455758 kcal Electronic energy + Delta-G solvation = -23974.844559 eV Core-core repulsion = 20533.107889 eV Total energy + Delta-G solvation = -3441.736670 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.82047 -38.95109 -37.74068 -36.00569 -35.34892 -32.94057 -31.80753 -30.15397 -28.72707 -27.58750 -26.23703 -23.26225 -23.03149 -21.81596 -20.68792 -19.70526 -18.25314 -18.09002 -16.94985 -16.65668 -16.39071 -15.75125 -15.51808 -14.87426 -14.76202 -14.25282 -14.05564 -13.50268 -13.34774 -13.21863 -13.02800 -12.31387 -12.26281 -12.08432 -11.65992 -11.46659 -11.32792 -11.23253 -11.14887 -11.06272 -11.06000 -10.91512 -10.79286 -10.68466 -10.54636 -10.35676 -10.29086 -10.15580 -9.67567 -9.03437 -8.45780 -7.73998 -6.07053 -4.12138 2.19810 2.83678 3.28693 3.35677 3.40244 3.52971 3.81624 4.42199 4.51700 4.57324 4.65834 4.94821 5.03833 5.21067 5.27588 5.35378 5.38152 5.44348 5.55834 5.59695 5.61223 5.66094 5.72859 5.77221 5.86194 5.97586 6.01533 6.08336 6.20377 6.22879 6.34989 6.45516 6.50005 6.59021 6.99937 7.39623 7.47455 7.88832 7.98102 8.19276 8.29780 8.81332 8.97257 9.53119 11.00970 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.020433 B = 0.005405 C = 0.005024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.992709 B = 5179.588793 C = 5572.091155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.098 3.902 3 N -0.590 5.590 4 C 0.245 3.755 5 C -0.529 4.529 6 H 0.056 0.944 7 C 0.063 3.937 8 N -0.893 5.893 9 Si 0.897 3.103 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.274 1.274 13 C 0.518 3.482 14 O -0.519 6.519 15 C -0.100 4.100 16 H 0.117 0.883 17 C 0.495 3.505 18 O -0.499 6.499 19 O -0.514 6.514 20 C -0.067 4.067 21 C -0.125 4.125 22 C -0.121 4.121 23 C -0.124 4.124 24 C -0.116 4.116 25 H 0.062 0.938 26 H 0.051 0.949 27 H 0.062 0.938 28 H 0.085 0.915 29 H 0.072 0.928 30 H 0.035 0.965 31 H 0.046 0.954 32 H 0.264 0.736 33 H 0.409 0.591 34 H 0.097 0.903 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.072 0.928 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.000 -8.610 14.521 18.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.026 4.026 3 N -0.322 5.322 4 C 0.126 3.874 5 C -0.568 4.568 6 H 0.074 0.926 7 C -0.139 4.139 8 N -0.532 5.532 9 Si 0.725 3.275 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.199 1.199 13 C 0.302 3.698 14 O -0.395 6.395 15 C -0.122 4.122 16 H 0.135 0.865 17 C 0.335 3.665 18 O -0.385 6.385 19 O -0.326 6.326 20 C -0.086 4.086 21 C -0.162 4.162 22 C -0.159 4.159 23 C -0.162 4.162 24 C -0.154 4.154 25 H 0.081 0.919 26 H 0.070 0.930 27 H 0.081 0.919 28 H 0.104 0.896 29 H 0.090 0.910 30 H 0.053 0.947 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.268 0.732 34 H 0.115 0.885 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.091 0.909 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.010 -7.522 14.341 18.067 hybrid contribution 1.646 -0.507 -0.363 1.761 sum -6.364 -8.029 13.978 17.331 Atomic orbital electron populations 1.22253 0.96567 1.01639 1.02423 1.21558 0.93613 0.84040 1.03363 1.48275 1.63120 1.13389 1.07424 1.19337 0.96315 0.93884 0.77818 1.21415 0.96691 1.32231 1.06447 0.92573 1.24917 0.97902 0.94817 0.96309 1.69931 1.35740 1.33370 1.14148 0.86505 0.84666 0.77742 0.78589 1.20554 1.21009 1.19927 1.19466 0.79050 0.87343 0.83908 1.90704 1.46942 1.15472 1.86387 1.21513 0.92941 1.00492 0.97285 0.86511 1.22785 0.88904 0.79342 0.75441 1.90710 1.51168 1.58369 1.38269 1.84523 1.41345 1.30340 1.76361 1.21592 0.98104 0.97296 0.91647 1.22531 0.98407 0.99270 0.96038 1.22473 0.95471 1.00695 0.97258 1.22379 0.97567 1.01097 0.95109 1.22161 0.92976 1.01646 0.98587 0.91929 0.93005 0.91882 0.89621 0.91001 0.94697 0.93609 0.92664 0.73171 0.88469 0.91630 0.91242 0.91346 0.91630 0.91647 0.91653 0.90874 0.91558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.20 10.11 37.16 0.38 -1.82 16 2 C 0.10 1.56 5.75 -4.04 -0.02 1.54 16 3 N -0.59 -12.35 2.46 -175.06 -0.43 -12.78 16 4 C 0.25 6.36 5.21 -5.19 -0.03 6.33 16 5 C -0.53 -15.02 9.39 -34.44 -0.32 -15.34 16 6 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 7 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 8 N -0.89 -26.46 13.29 55.43 0.74 -25.72 16 9 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 13 C 0.52 10.85 5.62 -10.99 -0.06 10.79 16 14 O -0.52 -13.15 15.68 5.55 0.09 -13.06 16 15 C -0.10 -1.59 1.16 -92.92 -0.11 -1.69 16 16 H 0.12 1.53 5.78 -51.93 -0.30 1.23 16 17 C 0.49 8.13 6.65 36.01 0.24 8.37 16 18 O -0.50 -9.61 17.05 -18.74 -0.32 -9.93 16 19 O -0.51 -6.63 12.71 -39.26 -0.50 -7.12 16 20 C -0.07 -0.98 1.83 -89.50 -0.16 -1.14 16 21 C -0.12 -1.42 5.73 -25.03 -0.14 -1.57 16 22 C -0.12 -1.16 6.91 -24.70 -0.17 -1.33 16 23 C -0.12 -1.24 6.83 -25.08 -0.17 -1.41 16 24 C -0.12 -1.53 5.92 -25.62 -0.15 -1.69 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.05 0.63 7.36 -51.93 -0.38 0.24 16 27 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 28 H 0.09 1.42 8.07 -51.93 -0.42 1.00 16 29 H 0.07 1.00 5.48 -51.93 -0.28 0.72 16 30 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 31 H 0.05 1.34 7.35 -51.93 -0.38 0.96 16 32 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 33 H 0.41 3.52 9.10 45.56 0.41 3.93 16 34 H 0.10 1.69 7.62 -51.93 -0.40 1.29 16 35 H 0.06 0.67 7.84 -51.93 -0.41 0.27 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.07 0.65 8.14 -51.92 -0.42 0.22 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.07 0.93 6.67 -51.92 -0.35 0.58 16 LS Contribution 343.20 15.07 5.17 5.17 Total: -1.00 -34.59 343.20 -6.95 -41.54 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -5.85 Total: 2.21 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: -0.83 Total: 2.72 kcal Atomic # 7 Polarization: -38.81 SS G_CDS: 0.31 Total: -38.50 kcal Atomic # 8 Polarization: -29.38 SS G_CDS: -0.73 Total: -30.11 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -34.59 -6.95 -41.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603736416.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.917 kcal (2) G-P(sol) polarization free energy of solvation -34.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds