Wall clock time and date at job start Tue Mar 31 2020 05:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47266 * 2 1 4 4 H 1.08997 * 109.47619 * 305.00730 * 3 2 1 5 5 C 1.50696 * 109.47242 * 184.99765 * 3 2 1 6 6 H 1.08004 * 120.00141 * 240.00263 * 5 3 2 7 7 C 1.37880 * 119.99994 * 60.00553 * 5 3 2 8 8 N 1.31517 * 119.99901 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00054 * 179.97438 * 7 5 3 10 10 H 1.48492 * 109.47062 * 60.00345 * 9 7 5 11 11 H 1.48508 * 109.46722 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.46972 * 299.99798 * 9 7 5 13 13 N 1.46505 * 109.46662 * 65.00213 * 3 2 1 14 14 C 1.34777 * 120.00115 * 274.99892 * 13 3 2 15 15 O 1.21288 * 119.99593 * 0.02562 * 14 13 3 16 16 C 1.50697 * 120.00369 * 180.02562 * 14 13 3 17 17 H 1.09002 * 109.47120 * 59.99760 * 16 14 13 18 18 C 1.52997 * 109.47466 * 180.02562 * 16 14 13 19 19 C 1.53000 * 109.47060 * 180.02562 * 18 16 14 20 20 C 1.53002 * 109.47233 * 299.99657 * 19 18 16 21 21 H 1.09002 * 109.47075 * 300.00932 * 20 19 18 22 22 C 1.50693 * 109.47531 * 180.02562 * 20 19 18 23 23 O 1.20828 * 119.99953 * 0.02562 * 22 20 19 24 24 O 1.34226 * 120.00533 * 179.97438 * 22 20 19 25 25 C 1.52997 * 109.46817 * 60.00194 * 20 19 18 26 26 C 1.52999 * 109.46961 * 300.00358 * 16 14 13 27 27 H 1.08998 * 109.47130 * 299.99327 * 1 2 3 28 28 H 1.09003 * 109.46963 * 59.99953 * 1 2 3 29 29 H 1.08997 * 109.46930 * 179.97438 * 1 2 3 30 30 H 1.09010 * 109.46976 * 240.00248 * 2 1 3 31 31 H 1.09004 * 109.47354 * 120.00415 * 2 1 3 32 32 H 0.96997 * 119.99977 * 180.02562 * 8 7 5 33 33 H 0.97003 * 120.00244 * 94.99922 * 13 3 2 34 34 H 1.09002 * 109.47153 * 59.99773 * 18 16 14 35 35 H 1.09001 * 109.46832 * 299.99964 * 18 16 14 36 36 H 1.08992 * 109.47399 * 59.99823 * 19 18 16 37 37 H 1.09004 * 109.46724 * 180.02562 * 19 18 16 38 38 H 0.96696 * 117.00085 * 180.02562 * 24 22 20 39 39 H 1.09002 * 109.47153 * 60.00231 * 25 20 19 40 40 H 1.09001 * 109.47289 * 180.02562 * 25 20 19 41 41 H 1.09000 * 109.47486 * 59.99568 * 26 16 14 42 42 H 1.09002 * 109.46716 * 299.99650 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4442 -0.1238 6 1 4.1472 1.8888 0.6524 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3376 -2.1734 9 14 6.0050 0.8812 -1.3817 10 1 6.5975 0.1472 -0.2350 11 1 6.3978 0.2178 -2.6510 12 1 6.4995 2.2815 -1.3820 13 7 1.6525 2.0973 1.2519 14 6 0.4352 2.6642 1.3671 15 8 -0.3396 2.6318 0.4345 16 6 0.0367 3.3384 2.6546 17 1 0.7281 4.1539 2.8669 18 6 -1.3826 3.8940 2.5214 19 6 -1.7869 4.5790 3.8284 20 6 -1.7422 3.5632 4.9717 21 1 -2.4333 2.7473 4.7600 22 6 -2.1409 4.2377 6.2589 23 8 -2.4316 5.4105 6.2616 24 8 -2.1742 3.5354 7.4023 25 6 -0.3229 3.0076 5.1049 26 6 0.0808 2.3220 3.7974 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8900 32 1 3.8293 -0.0608 -2.9500 33 1 2.2720 2.1230 1.9979 34 1 -2.0738 3.0783 2.3094 35 1 -1.4144 4.6181 1.7072 36 1 -1.0957 5.3948 4.0400 37 1 -2.7982 4.9745 3.7336 38 1 -2.4364 4.0112 8.2023 39 1 0.3683 3.8234 5.3165 40 1 -0.2910 2.2835 5.9191 41 1 1.0917 1.9257 3.8924 42 1 -0.6107 1.5065 3.5851 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604981503.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:10 Heat of formation + Delta-G solvation = -164.494161 kcal Electronic energy + Delta-G solvation = -23039.095120 eV Core-core repulsion = 19596.576246 eV Total energy + Delta-G solvation = -3442.518874 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.81108 -39.50313 -37.43880 -36.32230 -35.00272 -32.50005 -31.69790 -30.91208 -30.46469 -27.02646 -25.09657 -23.14293 -22.63745 -21.84653 -20.31274 -19.68943 -19.21101 -18.23227 -17.25274 -16.83953 -16.10558 -15.67900 -15.37228 -14.85508 -14.52886 -14.14262 -14.02194 -13.82026 -13.28943 -12.93357 -12.72934 -12.43027 -12.34680 -12.00359 -11.79611 -11.57938 -11.49021 -11.28922 -11.20531 -11.15434 -10.99204 -10.81581 -10.64143 -10.45646 -10.32008 -10.24881 -10.12902 -9.61858 -9.04710 -8.84459 -8.48590 -7.78552 -6.11987 -4.21489 1.96554 2.79546 3.25088 3.30715 3.31565 3.43846 4.08993 4.36147 4.42937 4.49541 4.73835 5.03457 5.05576 5.19016 5.19600 5.23613 5.33501 5.38362 5.52368 5.71247 5.82382 5.87254 5.93443 6.04946 6.12033 6.24972 6.30772 6.39593 6.42208 6.47101 6.67063 7.04502 7.20998 7.38269 7.49124 7.62656 7.64604 7.74933 7.91675 8.19410 8.70727 8.79127 9.18425 9.46370 10.93212 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.030539 B = 0.003556 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.631001 B = 7871.357770 C = 8168.133933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.048 0.952 5 C -0.535 4.535 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.708 5.708 14 C 0.504 3.496 15 O -0.549 6.549 16 C -0.113 4.113 17 H 0.091 0.909 18 C -0.096 4.096 19 C -0.103 4.103 20 C -0.080 4.080 21 H 0.111 0.889 22 C 0.482 3.518 23 O -0.517 6.517 24 O -0.517 6.517 25 C -0.107 4.107 26 C -0.108 4.108 27 H 0.039 0.961 28 H 0.049 0.951 29 H 0.021 0.979 30 H 0.098 0.902 31 H 0.030 0.970 32 H 0.265 0.735 33 H 0.387 0.613 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.407 0.593 39 H 0.070 0.930 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.110 4.110 16.266 18.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.066 0.934 5 C -0.573 4.573 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.202 1.202 13 N -0.356 5.356 14 C 0.289 3.711 15 O -0.428 6.428 16 C -0.134 4.134 17 H 0.110 0.890 18 C -0.134 4.134 19 C -0.141 4.141 20 C -0.100 4.100 21 H 0.129 0.871 22 C 0.325 3.675 23 O -0.405 6.405 24 O -0.328 6.328 25 C -0.145 4.145 26 C -0.146 4.146 27 H 0.058 0.942 28 H 0.068 0.932 29 H 0.040 0.960 30 H 0.116 0.884 31 H 0.049 0.951 32 H 0.075 0.925 33 H 0.219 0.781 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.266 0.734 39 H 0.088 0.912 40 H 0.097 0.903 41 H 0.095 0.905 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.589 4.084 15.013 17.772 hybrid contribution 1.154 0.289 0.835 1.454 sum -7.435 4.373 15.848 18.043 Atomic orbital electron populations 1.21836 0.98376 0.97925 1.01251 1.21925 0.92585 0.99875 1.02181 1.18751 0.94056 0.89158 0.81196 0.93424 1.21209 0.90832 1.39033 1.06247 0.92212 1.24885 0.98534 0.94839 0.95404 1.69885 1.35186 1.37574 1.09328 0.86531 0.84963 0.78297 0.77439 1.20178 1.21154 1.20214 1.46507 1.14742 1.55982 1.18358 1.20297 0.82684 0.79286 0.88846 1.90664 1.51522 1.59916 1.40711 1.21422 0.98921 0.98893 0.94208 0.89036 1.21314 0.95030 1.00840 0.96174 1.21505 1.02962 0.96908 0.92733 1.21180 1.00107 0.99907 0.88759 0.87126 1.23711 0.72914 0.85285 0.85588 1.90717 1.45248 1.17708 1.86779 1.84562 1.81530 1.47484 1.19247 1.21544 0.93366 1.00759 0.98817 1.21526 1.02864 0.97686 0.92531 0.94192 0.93223 0.95982 0.88408 0.95115 0.92530 0.78098 0.90921 0.90478 0.90955 0.90878 0.73435 0.91155 0.90301 0.90516 0.90917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 8.51 37.16 0.32 -2.67 16 2 C -0.13 -3.02 5.45 -26.73 -0.15 -3.17 16 3 C 0.27 6.64 2.24 -69.08 -0.15 6.48 16 4 H 0.05 1.37 7.58 -51.93 -0.39 0.98 16 5 C -0.53 -13.89 8.73 -34.44 -0.30 -14.19 16 6 H 0.06 1.48 7.74 -52.48 -0.41 1.08 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.52 11.30 55.43 0.63 -23.90 16 9 Si 0.90 20.40 29.54 -169.99 -5.02 15.38 16 10 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 11 H -0.29 -6.49 7.11 56.52 0.40 -6.08 16 12 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 13 N -0.71 -13.96 4.91 -54.93 -0.27 -14.23 16 14 C 0.50 9.31 5.72 -10.99 -0.06 9.24 16 15 O -0.55 -12.19 13.12 5.55 0.07 -12.12 16 16 C -0.11 -1.48 2.53 -91.78 -0.23 -1.71 16 17 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 18 C -0.10 -1.19 4.49 -26.73 -0.12 -1.31 16 19 C -0.10 -1.08 4.49 -26.73 -0.12 -1.20 16 20 C -0.08 -0.74 2.63 -91.78 -0.24 -0.98 16 21 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 22 C 0.48 4.76 7.63 36.00 0.27 5.03 16 23 O -0.52 -6.65 16.74 -18.75 -0.31 -6.96 16 24 O -0.52 -3.83 13.33 -39.25 -0.52 -4.36 16 25 C -0.11 -0.94 5.14 -26.70 -0.14 -1.08 16 26 C -0.11 -1.16 5.10 -26.70 -0.14 -1.30 16 27 H 0.04 0.83 5.64 -51.93 -0.29 0.54 16 28 H 0.05 1.17 7.85 -51.93 -0.41 0.76 16 29 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.10 2.60 5.95 -51.92 -0.31 2.29 16 31 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 33 H 0.39 6.62 7.96 -40.82 -0.32 6.29 16 34 H 0.07 0.95 8.10 -51.93 -0.42 0.53 16 35 H 0.08 1.05 8.10 -51.93 -0.42 0.63 16 36 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 37 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16 38 H 0.41 1.36 9.10 45.56 0.41 1.77 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.08 0.62 8.12 -51.93 -0.42 0.20 16 41 H 0.08 0.80 7.56 -51.93 -0.39 0.41 16 42 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 335.26 15.07 5.05 5.05 Total: -1.00 -31.66 335.26 -7.42 -39.08 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -5.89 Total: 7.22 kcal Atomic # 6 Polarization: -4.02 SS G_CDS: -1.15 Total: -5.17 kcal Atomic # 7 Polarization: -38.48 SS G_CDS: 0.36 Total: -38.12 kcal Atomic # 8 Polarization: -22.67 SS G_CDS: -0.76 Total: -23.44 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.66 -7.42 -39.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604981503.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.418 kcal (2) G-P(sol) polarization free energy of solvation -31.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds