Wall clock time and date at job start Tue Mar 31 2020 06:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 109.46852 * 2 1 4 4 C 1.46499 * 120.00209 * 264.90140 * 3 2 1 5 5 C 1.50697 * 109.46877 * 93.22301 * 4 3 2 6 6 H 1.07995 * 120.00020 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99935 * 180.02562 * 5 4 3 8 8 N 1.31514 * 120.00193 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 119.99959 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.46927 * 89.99927 * 9 7 5 11 11 H 1.48502 * 109.47177 * 210.00091 * 9 7 5 12 12 H 1.48503 * 109.47018 * 329.99948 * 9 7 5 13 13 C 1.34778 * 119.99969 * 84.90728 * 3 2 1 14 14 O 1.21281 * 120.00245 * 5.28677 * 13 3 2 15 15 C 1.50704 * 120.00013 * 185.28805 * 13 3 2 16 16 H 1.09000 * 109.46739 * 336.88171 * 15 13 3 17 17 C 1.53000 * 109.47302 * 96.88064 * 15 13 3 18 18 C 1.52994 * 109.47199 * 180.02562 * 17 15 13 19 19 C 1.53006 * 109.47087 * 299.99815 * 18 17 15 20 20 H 1.08997 * 109.46848 * 300.00418 * 19 18 17 21 21 C 1.50697 * 109.47178 * 180.02562 * 19 18 17 22 22 O 1.20819 * 119.99791 * 239.99963 * 21 19 18 23 23 O 1.34233 * 120.00102 * 60.00313 * 21 19 18 24 24 C 1.53000 * 109.46950 * 60.00032 * 19 18 17 25 25 C 1.52998 * 109.47187 * 216.88270 * 15 13 3 26 26 H 1.09001 * 109.46842 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46934 * 60.00481 * 1 2 3 28 28 H 1.09002 * 109.47174 * 299.99967 * 1 2 3 29 29 H 1.09008 * 109.46933 * 119.99662 * 2 1 3 30 30 H 1.08993 * 109.47636 * 239.99691 * 2 1 3 31 31 H 1.09000 * 109.47175 * 213.22862 * 4 3 2 32 32 H 1.09000 * 109.46965 * 333.22829 * 4 3 2 33 33 H 0.96999 * 120.00134 * 180.02562 * 8 7 5 34 34 H 1.09006 * 109.46822 * 300.00410 * 17 15 13 35 35 H 1.08997 * 109.47030 * 59.99831 * 17 15 13 36 36 H 1.09008 * 109.47217 * 180.02562 * 18 17 15 37 37 H 1.08997 * 109.47618 * 59.99762 * 18 17 15 38 38 H 0.96693 * 116.99964 * 179.97438 * 23 21 19 39 39 H 1.08998 * 109.47127 * 180.02562 * 24 19 18 40 40 H 1.09000 * 109.47136 * 59.99978 * 24 19 18 41 41 H 1.09000 * 109.47199 * 299.99618 * 25 15 13 42 42 H 1.08997 * 109.47363 * 59.99636 * 25 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3687 2.0343 -1.2637 5 6 1.1764 2.7955 -1.7832 6 1 0.2505 2.7934 -1.2275 7 6 1.2678 3.4947 -2.9681 8 7 0.2274 4.1594 -3.4212 9 14 2.8693 3.4977 -3.9297 10 1 2.8739 2.3626 -4.8871 11 1 2.9962 4.7753 -4.6759 12 1 4.0109 3.3577 -2.9903 13 6 2.1452 2.0511 1.1626 14 8 1.9476 1.4819 2.2152 15 6 2.5327 3.5075 1.1547 16 1 3.0532 3.7398 0.2257 17 6 1.2742 4.3707 1.2638 18 6 1.6675 5.8492 1.2552 19 6 2.5890 6.1387 2.4418 20 1 2.0687 5.9066 3.3710 21 6 2.9760 7.5951 2.4336 22 8 4.1392 7.9106 2.3490 23 8 2.0284 8.5419 2.5205 24 6 3.8475 5.2755 2.3327 25 6 3.4539 3.7965 2.3415 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 0.8901 30 1 1.8934 -0.5138 -0.8899 31 1 3.1966 2.7239 -1.0989 32 1 2.6640 1.2799 -1.9929 33 1 0.2916 4.6510 -4.2550 34 1 0.6179 4.1646 0.4182 35 1 0.7536 4.1382 2.1928 36 1 0.7709 6.4642 1.3334 37 1 2.1879 6.0813 0.3260 38 1 2.3251 9.4621 2.5117 39 1 4.5038 5.4814 3.1782 40 1 4.3679 5.5076 1.4034 41 1 2.9334 3.5642 3.2706 42 1 4.3505 3.1816 2.2638 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605437923.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:12 Heat of formation + Delta-G solvation = -152.509621 kcal Electronic energy + Delta-G solvation = -23739.506290 eV Core-core repulsion = 20297.507105 eV Total energy + Delta-G solvation = -3441.999185 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.56189 -39.54250 -37.24323 -36.06318 -35.27582 -32.71977 -31.65679 -30.56765 -30.07481 -27.64138 -25.07098 -22.98169 -22.51437 -22.26972 -21.09352 -19.64172 -18.16306 -17.95006 -17.07615 -16.64568 -16.39091 -15.88796 -15.42645 -14.62572 -14.27932 -13.94381 -13.72542 -13.57591 -13.41492 -12.93785 -12.73005 -12.48264 -12.36236 -12.02306 -11.98550 -11.72142 -11.53401 -11.41058 -11.37230 -11.07256 -10.98896 -10.85886 -10.73060 -10.35939 -10.32331 -10.28213 -9.96502 -9.87628 -9.52776 -8.93048 -8.71568 -7.75813 -6.23720 -4.24430 2.22843 3.06666 3.15515 3.23347 3.26025 3.33174 3.85969 4.24531 4.70967 4.86776 4.98066 5.06872 5.30763 5.33839 5.43043 5.51741 5.64748 5.66971 5.75546 5.78159 5.88681 5.97223 6.07049 6.10676 6.20554 6.21951 6.23458 6.41950 6.42295 6.47391 6.49955 6.52444 6.61738 6.79530 6.83418 6.87925 7.36209 7.43038 7.90352 8.13439 8.39502 8.80887 8.95314 9.36278 10.88250 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.013544 B = 0.006588 C = 0.005120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.779367 B = 4249.167809 C = 5467.083964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.119 3.881 3 N -0.592 5.592 4 C 0.205 3.795 5 C -0.535 4.535 6 H 0.082 0.918 7 C 0.078 3.922 8 N -0.889 5.889 9 Si 0.866 3.134 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.264 1.264 13 C 0.525 3.475 14 O -0.572 6.572 15 C -0.105 4.105 16 H 0.100 0.900 17 C -0.100 4.100 18 C -0.104 4.104 19 C -0.080 4.080 20 H 0.108 0.892 21 C 0.484 3.516 22 O -0.520 6.520 23 O -0.515 6.515 24 C -0.101 4.101 25 C -0.102 4.102 26 H 0.051 0.949 27 H 0.071 0.929 28 H 0.051 0.949 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.034 0.966 32 H 0.029 0.971 33 H 0.266 0.734 34 H 0.097 0.903 35 H 0.061 0.939 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.405 0.595 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.008 2.528 8.566 9.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.004 4.004 3 N -0.322 5.322 4 C 0.084 3.916 5 C -0.573 4.573 6 H 0.100 0.900 7 C -0.126 4.126 8 N -0.527 5.527 9 Si 0.693 3.307 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.189 1.189 13 C 0.314 3.686 14 O -0.453 6.453 15 C -0.126 4.126 16 H 0.118 0.882 17 C -0.138 4.138 18 C -0.141 4.141 19 C -0.099 4.099 20 H 0.126 0.874 21 C 0.327 3.673 22 O -0.409 6.409 23 O -0.326 6.326 24 C -0.138 4.138 25 C -0.140 4.140 26 H 0.070 0.930 27 H 0.090 0.910 28 H 0.070 0.930 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.052 0.948 32 H 0.047 0.953 33 H 0.076 0.924 34 H 0.116 0.884 35 H 0.080 0.920 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.264 0.736 39 H 0.088 0.912 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.033 2.006 8.901 9.976 hybrid contribution 0.929 0.790 -0.915 1.524 sum 4.962 2.796 7.987 9.810 Atomic orbital electron populations 1.22103 0.96176 1.00812 1.03113 1.21233 0.94629 0.83181 1.01379 1.47996 1.63413 1.13155 1.07644 1.19889 0.97107 0.93336 0.81252 1.21358 0.98392 1.30216 1.07314 0.89984 1.24847 0.95986 0.94770 0.96955 1.69877 1.29491 1.31824 1.21466 0.87009 0.84687 0.78068 0.80961 1.20035 1.20952 1.18887 1.20431 0.76493 0.88610 0.83072 1.90577 1.53258 1.70143 1.31307 1.21323 0.98297 0.92274 1.00690 0.88209 1.21407 0.96587 0.92147 1.03680 1.21491 0.98699 0.97751 0.96174 1.21200 0.99748 0.85968 1.03003 0.87375 1.23751 0.83148 0.89442 0.70949 1.90692 1.20716 1.83558 1.45893 1.84578 1.42534 1.20304 1.85226 1.21454 0.95031 0.93968 1.03396 1.21431 0.99189 0.94619 0.98727 0.93037 0.91025 0.92952 0.91473 0.91214 0.94814 0.95341 0.92417 0.88407 0.92048 0.90451 0.90799 0.73640 0.91158 0.90843 0.90773 0.91592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.84 10.20 37.16 0.38 -2.46 16 2 C 0.12 2.10 6.16 -4.04 -0.02 2.07 16 3 N -0.59 -11.72 2.47 -175.06 -0.43 -12.15 16 4 C 0.21 4.34 3.95 -5.20 -0.02 4.32 16 5 C -0.53 -13.08 8.93 -34.44 -0.31 -13.39 16 6 H 0.08 2.23 7.41 -52.49 -0.39 1.84 16 7 C 0.08 2.00 5.47 -17.82 -0.10 1.90 16 8 N -0.89 -24.63 13.96 55.43 0.77 -23.86 16 9 Si 0.87 19.27 27.47 -169.99 -4.67 14.60 16 10 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 12 H -0.26 -5.57 6.54 56.52 0.37 -5.20 16 13 C 0.53 10.35 6.58 -10.98 -0.07 10.28 16 14 O -0.57 -12.28 15.95 5.56 0.09 -12.19 16 15 C -0.10 -1.81 2.02 -91.77 -0.19 -1.99 16 16 H 0.10 1.81 5.66 -51.93 -0.29 1.52 16 17 C -0.10 -1.67 5.19 -26.73 -0.14 -1.81 16 18 C -0.10 -1.50 5.14 -26.73 -0.14 -1.64 16 19 C -0.08 -1.03 2.63 -91.77 -0.24 -1.27 16 20 H 0.11 1.23 8.14 -51.93 -0.42 0.81 16 21 C 0.48 6.37 7.63 36.00 0.27 6.65 16 22 O -0.52 -8.19 16.74 -18.74 -0.31 -8.51 16 23 O -0.52 -5.50 13.33 -39.27 -0.52 -6.03 16 24 C -0.10 -1.35 4.50 -26.71 -0.12 -1.47 16 25 C -0.10 -1.49 4.89 -26.71 -0.13 -1.62 16 26 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.07 1.38 8.06 -51.93 -0.42 0.96 16 28 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.07 1.16 7.51 -51.92 -0.39 0.77 16 30 H 0.07 1.12 7.81 -51.93 -0.41 0.71 16 31 H 0.03 0.71 5.13 -51.93 -0.27 0.44 16 32 H 0.03 0.59 7.24 -51.93 -0.38 0.22 16 33 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 34 H 0.10 1.93 6.64 -51.93 -0.34 1.59 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.08 1.06 8.11 -51.92 -0.42 0.64 16 37 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.41 2.56 9.10 45.56 0.41 2.98 16 39 H 0.07 0.87 8.10 -51.93 -0.42 0.45 16 40 H 0.07 1.04 8.10 -51.93 -0.42 0.62 16 41 H 0.07 1.10 7.86 -51.93 -0.41 0.69 16 42 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 LS Contribution 337.84 15.07 5.09 5.09 Total: -1.00 -30.15 337.84 -6.65 -36.80 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -5.84 Total: 6.66 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: -0.82 Total: -0.42 kcal Atomic # 7 Polarization: -36.35 SS G_CDS: 0.34 Total: -36.01 kcal Atomic # 8 Polarization: -25.98 SS G_CDS: -0.75 Total: -26.73 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -4.67 Total: 14.60 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.15 -6.65 -36.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605437923.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.712 kcal (2) G-P(sol) polarization free energy of solvation -30.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds