Wall clock time and date at job start Tue Mar 31 2020 06:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47301 * 2 1 4 4 C 1.52999 * 109.47300 * 119.99886 * 2 1 3 5 5 C 1.52999 * 109.47300 * 179.97438 * 4 2 1 6 6 C 1.53007 * 109.46938 * 299.99590 * 5 4 2 7 7 H 1.08989 * 109.47458 * 300.00278 * 6 5 4 8 8 C 1.50698 * 109.46992 * 179.97438 * 6 5 4 9 9 O 1.21295 * 119.99962 * 337.52575 * 8 6 5 10 10 N 1.34768 * 120.00065 * 157.52018 * 8 6 5 11 11 C 1.37105 * 119.99812 * 5.67141 * 10 8 6 12 12 H 1.07995 * 119.99858 * 317.90316 * 11 10 8 13 13 C 1.38949 * 120.00172 * 137.90286 * 11 10 8 14 14 N 1.31415 * 119.99736 * 341.82498 * 13 11 10 15 15 Si 1.86797 * 120.00080 * 161.82252 * 13 11 10 16 16 H 1.48496 * 109.47201 * 90.00360 * 15 13 11 17 17 H 1.48505 * 109.47168 * 209.99919 * 15 13 11 18 18 H 1.48502 * 109.47064 * 329.99789 * 15 13 11 19 19 C 1.46505 * 120.00320 * 185.66520 * 10 8 6 20 20 C 1.52999 * 109.46928 * 84.39485 * 19 10 8 21 21 C 1.50691 * 109.47092 * 180.02562 * 20 19 10 22 22 O 1.20827 * 120.00077 * 359.97438 * 21 20 19 23 23 O 1.34233 * 120.00088 * 179.97438 * 21 20 19 24 24 C 1.53001 * 109.46506 * 60.00562 * 6 5 4 25 25 C 1.52999 * 109.47063 * 299.99361 * 24 6 5 26 26 H 1.09000 * 109.46946 * 300.00354 * 1 2 3 27 27 H 1.09003 * 109.46654 * 59.99920 * 1 2 3 28 28 H 1.08994 * 109.47243 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46851 * 59.99838 * 4 2 1 30 30 H 1.09002 * 109.47261 * 300.00178 * 4 2 1 31 31 H 1.08989 * 109.47273 * 59.99981 * 5 4 2 32 32 H 1.09003 * 109.46654 * 180.02562 * 5 4 2 33 33 H 0.96997 * 119.99904 * 179.97438 * 14 13 11 34 34 H 1.09000 * 109.47235 * 204.39175 * 19 10 8 35 35 H 1.09002 * 109.46832 * 324.39678 * 19 10 8 36 36 H 1.09003 * 109.47278 * 300.00248 * 20 19 10 37 37 H 1.09002 * 109.46910 * 59.99962 * 20 19 10 38 38 H 0.96703 * 117.00056 * 180.02562 * 23 21 20 39 39 H 1.09000 * 109.46641 * 179.97438 * 24 6 5 40 40 H 1.08997 * 109.47725 * 59.99951 * 24 6 5 41 41 H 1.09003 * 109.47301 * 300.00379 * 25 24 6 42 42 H 1.09002 * 109.47394 * 180.02562 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5700 -0.7218 1.2489 6 6 4.0795 -1.4435 -0.0003 7 1 3.7158 -2.4710 -0.0001 8 6 5.5865 -1.4436 -0.0010 9 8 6.1932 -0.6102 0.6383 10 7 6.2600 -2.3695 -0.7117 11 6 5.5791 -3.2378 -1.5255 12 1 4.6581 -3.6873 -1.1851 13 6 6.0741 -3.5394 -2.7883 14 7 6.9676 -2.7552 -3.3484 15 14 5.4697 -5.0597 -3.6898 16 1 4.2831 -4.7092 -4.5111 17 1 6.5480 -5.5735 -4.5722 18 1 5.0974 -6.1051 -2.7030 19 6 7.7197 -2.4483 -0.6149 20 6 8.1053 -3.2941 0.6003 21 6 9.6067 -3.3746 0.7003 22 8 10.2976 -2.8135 -0.1169 23 8 10.1767 -4.0698 1.6971 24 6 3.5695 -0.7222 -1.2495 25 6 2.0395 -0.7216 -1.2492 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.6767 -1.7489 1.2492 30 1 1.6767 -0.2074 2.1392 31 1 3.9337 0.3056 1.2487 32 1 3.9333 -1.2360 2.1387 33 1 7.3134 -2.9659 -4.2298 34 1 8.1196 -2.9076 -1.5189 35 1 8.1311 -1.4449 -0.5046 36 1 7.7054 -2.8349 1.5043 37 1 7.6938 -4.2974 0.4899 38 1 11.1432 -4.0923 1.7200 39 1 3.9328 -1.2361 -2.1395 40 1 3.9332 0.3053 -1.2499 41 1 1.6757 -1.7492 -1.2490 42 1 1.6761 -0.2082 -2.1394 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001607464617.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:07 Heat of formation + Delta-G solvation = -160.249387 kcal Electronic energy + Delta-G solvation = -23436.543185 eV Core-core repulsion = 19994.208379 eV Total energy + Delta-G solvation = -3442.334807 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.86210 -39.25241 -37.41102 -35.79925 -34.89242 -32.37917 -31.88902 -30.52243 -30.12508 -26.56775 -25.16448 -23.89612 -22.13172 -21.44015 -20.34137 -19.38018 -18.96354 -17.77088 -16.83089 -16.12743 -15.88864 -15.45132 -14.84928 -14.52492 -14.19907 -13.90210 -13.81875 -13.50730 -13.16289 -12.95476 -12.60329 -12.44513 -12.07484 -11.90391 -11.69492 -11.61553 -11.28528 -11.17816 -11.12314 -10.96020 -10.84325 -10.61299 -10.47651 -10.42559 -10.17181 -10.14569 -10.03557 -9.76600 -9.49268 -9.10624 -8.35483 -7.52026 -6.39148 -4.15219 2.65898 3.09322 3.19901 3.21820 3.40817 3.88240 4.12487 4.74243 4.91937 5.04675 5.07805 5.20702 5.56097 5.58993 5.65658 5.77890 5.85200 5.86647 5.89224 5.95084 5.99103 5.99511 6.08211 6.15807 6.22464 6.31897 6.39368 6.47658 6.55276 6.63948 6.69136 6.74994 6.81869 6.90167 7.02253 7.07422 7.29063 7.43646 7.94589 8.28459 8.32982 9.05283 9.47404 9.90987 10.64217 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.014526 B = 0.005949 C = 0.004579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.081051 B = 4705.567308 C = 6113.363571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.094 4.094 3 H 0.067 0.933 4 C -0.110 4.110 5 C -0.101 4.101 6 C -0.083 4.083 7 H 0.084 0.916 8 C 0.483 3.517 9 O -0.602 6.602 10 N -0.441 5.441 11 C -0.346 4.346 12 H 0.089 0.911 13 C 0.048 3.952 14 N -0.854 5.854 15 Si 0.908 3.092 16 H -0.276 1.276 17 H -0.283 1.283 18 H -0.268 1.268 19 C 0.134 3.866 20 C -0.126 4.126 21 C 0.483 3.517 22 O -0.514 6.514 23 O -0.525 6.525 24 C -0.102 4.102 25 C -0.109 4.109 26 H 0.049 0.951 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.067 0.933 32 H 0.056 0.944 33 H 0.270 0.730 34 H 0.106 0.894 35 H 0.064 0.936 36 H 0.097 0.903 37 H 0.104 0.896 38 H 0.401 0.599 39 H 0.084 0.916 40 H 0.054 0.946 41 H 0.060 0.940 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.284 -1.237 5.703 8.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 H 0.085 0.915 4 C -0.148 4.148 5 C -0.139 4.139 6 C -0.104 4.104 7 H 0.102 0.898 8 C 0.272 3.728 9 O -0.488 6.488 10 N -0.159 5.159 11 C -0.474 4.474 12 H 0.107 0.893 13 C -0.159 4.159 14 N -0.489 5.489 15 Si 0.734 3.266 16 H -0.201 1.201 17 H -0.208 1.208 18 H -0.193 1.193 19 C 0.009 3.991 20 C -0.165 4.165 21 C 0.325 3.675 22 O -0.401 6.401 23 O -0.337 6.337 24 C -0.140 4.140 25 C -0.147 4.147 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.124 0.876 35 H 0.082 0.918 36 H 0.115 0.885 37 H 0.122 0.878 38 H 0.259 0.741 39 H 0.102 0.898 40 H 0.073 0.927 41 H 0.079 0.921 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.095 -0.654 5.564 8.279 hybrid contribution 0.482 -0.915 -0.604 1.198 sum -5.613 -1.569 4.960 7.653 Atomic orbital electron populations 1.21834 0.95954 1.01456 1.01038 1.21170 0.94618 0.99802 0.95665 0.91478 1.21585 0.96055 1.00220 0.96936 1.21369 0.93936 1.01479 0.97089 1.20959 0.93134 1.00669 0.95653 0.89786 1.20609 0.89599 0.80661 0.81892 1.90521 1.70583 1.39216 1.48445 1.43330 1.04390 1.29163 1.39061 1.19296 1.09357 1.23378 0.95340 0.89315 1.25423 0.96702 0.97674 0.96140 1.69955 1.29054 1.34543 1.15390 0.86242 0.78611 0.82159 0.79543 1.20134 1.20793 1.19290 1.21022 0.83194 0.98931 0.95929 1.21904 0.86130 1.04763 1.03713 1.23798 0.92660 0.73967 0.77085 1.90707 1.65205 1.43517 1.40716 1.84593 1.28342 1.69337 1.51380 1.21341 0.93993 1.00264 0.98354 1.21580 0.96209 1.00269 0.96625 0.93184 0.93058 0.92887 0.92274 0.92589 0.91472 0.92519 0.91937 0.87645 0.91784 0.88480 0.87795 0.74141 0.89764 0.92688 0.92075 0.92480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.19 37.16 0.34 -1.24 16 2 C -0.09 -1.24 2.72 -90.62 -0.25 -1.48 16 3 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 4 C -0.11 -1.50 5.20 -26.73 -0.14 -1.64 16 5 C -0.10 -1.70 4.70 -26.73 -0.13 -1.83 16 6 C -0.08 -1.60 1.82 -91.77 -0.17 -1.76 16 7 H 0.08 1.58 6.71 -51.94 -0.35 1.24 16 8 C 0.48 11.33 6.73 -10.99 -0.07 11.26 16 9 O -0.60 -15.57 15.70 5.54 0.09 -15.49 16 10 N -0.44 -10.62 2.50 -114.81 -0.29 -10.91 16 11 C -0.35 -8.25 7.64 -14.93 -0.11 -8.37 16 12 H 0.09 2.01 6.64 -52.49 -0.35 1.66 16 13 C 0.05 1.16 4.94 -17.47 -0.09 1.08 16 14 N -0.85 -22.39 11.69 55.50 0.65 -21.74 16 15 Si 0.91 18.82 29.59 -169.99 -5.03 13.79 16 16 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 17 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 18 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 19 C 0.13 3.18 4.21 -4.04 -0.02 3.16 16 20 C -0.13 -2.46 6.09 -27.89 -0.17 -2.63 16 21 C 0.48 8.86 8.33 36.00 0.30 9.16 16 22 O -0.51 -11.02 16.74 -18.75 -0.31 -11.34 16 23 O -0.52 -7.47 13.42 -39.27 -0.53 -8.00 16 24 C -0.10 -1.87 5.11 -26.73 -0.14 -2.00 16 25 C -0.11 -1.60 5.20 -26.73 -0.14 -1.74 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 1.22 7.88 -51.94 -0.41 0.82 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 34 H 0.11 2.72 5.80 -51.93 -0.30 2.42 16 35 H 0.06 1.66 7.48 -51.93 -0.39 1.27 16 36 H 0.10 1.86 8.14 -51.93 -0.42 1.44 16 37 H 0.10 1.90 8.14 -51.93 -0.42 1.48 16 38 H 0.40 3.77 9.10 45.56 0.41 4.18 16 39 H 0.08 1.75 7.25 -51.93 -0.38 1.38 16 40 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 41 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 339.73 15.07 5.12 5.12 Total: -1.00 -29.73 339.73 -7.04 -36.77 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -5.97 Total: 9.83 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: -0.77 Total: 1.96 kcal Atomic # 7 Polarization: -33.01 SS G_CDS: 0.36 Total: -32.64 kcal Atomic # 8 Polarization: -34.07 SS G_CDS: -0.75 Total: -34.82 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.03 Total: 13.79 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.73 -7.04 -36.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607464617.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.477 kcal (2) G-P(sol) polarization free energy of solvation -29.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds