Wall clock time and date at job start Tue Mar 31 2020 06:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46781 * 2 1 4 4 C 1.52997 * 109.47335 * 239.99693 * 2 1 3 5 5 C 1.50706 * 109.46881 * 64.99777 * 4 2 1 6 6 O 1.20823 * 120.00162 * 359.97438 * 5 4 2 7 7 O 1.34231 * 119.99868 * 180.02562 * 5 4 2 8 8 C 1.52996 * 109.47022 * 119.99601 * 2 1 3 9 9 C 1.50702 * 109.47159 * 294.99939 * 8 2 1 10 10 O 1.21283 * 120.00262 * 0.02562 * 9 8 2 11 11 N 1.34777 * 119.99928 * 179.72352 * 9 8 2 12 12 C 1.46931 * 120.63086 * 0.02562 * 11 9 8 13 13 C 1.52760 * 109.00543 * 233.58109 * 12 11 9 14 14 C 1.53039 * 109.38459 * 305.58756 * 13 12 11 15 15 C 1.50707 * 109.45054 * 181.25601 * 14 13 12 16 16 H 1.07999 * 119.99774 * 239.93637 * 15 14 13 17 17 C 1.37874 * 119.99761 * 59.93415 * 15 14 13 18 18 N 1.31516 * 120.00171 * 0.02562 * 17 15 14 19 19 Si 1.86808 * 119.99783 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.46727 * 0.02562 * 19 17 15 21 21 H 1.48495 * 109.46733 * 120.00177 * 19 17 15 22 22 H 1.48501 * 109.47006 * 240.00399 * 19 17 15 23 23 C 1.53042 * 109.54031 * 61.24177 * 14 13 12 24 24 C 1.46925 * 120.62933 * 180.27723 * 11 9 8 25 25 H 1.09001 * 109.47522 * 60.00580 * 1 2 3 26 26 H 1.09007 * 109.47141 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47435 * 300.00109 * 1 2 3 28 28 H 1.08997 * 109.47529 * 184.99701 * 4 2 1 29 29 H 1.09004 * 109.46867 * 305.00016 * 4 2 1 30 30 H 0.96699 * 117.00261 * 180.02562 * 7 5 4 31 31 H 1.09004 * 109.47066 * 175.00142 * 8 2 1 32 32 H 1.08994 * 109.47405 * 54.99972 * 8 2 1 33 33 H 1.08997 * 109.58191 * 353.41302 * 12 11 9 34 34 H 1.09000 * 109.58404 * 113.84014 * 12 11 9 35 35 H 1.09004 * 109.56227 * 185.55021 * 13 12 11 36 36 H 1.09000 * 109.38786 * 65.51167 * 13 12 11 37 37 H 1.09005 * 109.46040 * 301.21818 * 14 13 12 38 38 H 0.97004 * 119.99633 * 180.02562 * 18 17 15 39 39 H 1.08994 * 109.49700 * 178.68705 * 23 14 13 40 40 H 1.08997 * 109.52427 * 58.60198 * 23 14 13 41 41 H 1.09005 * 109.58470 * 246.15337 * 24 11 9 42 42 H 1.08995 * 109.58817 * 6.44095 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6413 0.0570 -2.4766 6 8 1.0132 1.0829 -2.3638 7 8 1.9830 -0.3902 -3.6952 8 6 2.0400 -0.7211 1.2493 9 6 1.6413 0.0572 2.4766 10 8 1.0109 1.0872 2.3633 11 7 1.9800 -0.3943 3.7004 12 6 2.7383 -1.6434 3.8541 13 6 1.9881 -2.5660 4.8130 14 6 1.7221 -1.8261 6.1260 15 6 1.0092 -2.7451 7.0844 16 1 0.0327 -2.4798 7.4616 17 6 1.6038 -3.9247 7.4796 18 7 2.7932 -4.2476 7.0206 19 14 0.7199 -5.0642 8.6670 20 1 -0.5942 -4.4763 9.0315 21 1 0.5090 -6.3847 8.0213 22 1 1.5420 -5.2374 9.8915 23 6 0.8507 -0.5978 5.8540 24 6 1.5933 0.3503 4.9065 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 3.1263 -0.7995 -1.2056 29 1 1.6054 -1.7199 -1.2950 30 1 1.7053 0.1432 -4.4524 31 1 3.1263 -0.7994 1.2056 32 1 1.6054 -1.7196 1.2953 33 1 2.8397 -2.1308 2.8845 34 1 3.7257 -1.4238 4.2602 35 1 2.5892 -3.4535 5.0108 36 1 1.0401 -2.8614 4.3635 37 1 2.6693 -1.5098 6.5630 38 1 3.2113 -5.0776 7.2984 39 1 0.6423 -0.0845 6.7926 40 1 -0.0869 -0.9109 5.3946 41 1 2.4857 0.7354 5.4001 42 1 0.9416 1.1794 4.6309 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609732684.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:48 Heat of formation + Delta-G solvation = -151.190007 kcal Electronic energy + Delta-G solvation = -22789.479916 eV Core-core repulsion = 19347.537953 eV Total energy + Delta-G solvation = -3441.941962 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.61141 -39.74851 -37.18486 -36.46934 -35.16785 -33.53162 -31.43782 -30.21621 -29.02163 -27.66102 -25.98974 -23.31889 -22.61098 -22.12167 -20.38179 -19.53533 -18.43406 -18.08692 -17.08696 -16.62747 -16.24048 -16.12628 -15.39224 -15.16264 -14.56689 -14.30143 -13.68629 -13.51841 -13.15435 -13.02524 -12.73984 -12.63112 -12.49880 -12.28342 -11.93915 -11.81521 -11.60390 -11.35399 -11.15580 -11.02790 -10.96349 -10.79448 -10.62480 -10.48361 -10.38864 -10.12916 -9.67434 -9.31093 -9.18473 -8.93972 -8.41094 -7.99689 -6.06433 -4.12268 2.01768 2.79358 2.99803 3.25033 3.33772 3.38022 3.51652 4.38502 4.49591 4.74733 4.81400 4.97465 5.22862 5.24402 5.29247 5.38307 5.47812 5.64148 5.71524 5.79934 5.83575 5.94397 6.05753 6.11004 6.15187 6.28034 6.29465 6.37028 6.44290 6.58623 6.65329 6.88620 7.01843 7.12872 7.24766 7.63775 7.69282 7.88823 7.93815 8.00983 8.37331 8.58833 8.91445 9.53097 10.99099 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.030302 B = 0.003327 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.807846 B = 8413.479182 C = 8833.472886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.063 4.063 3 H 0.087 0.913 4 C -0.112 4.112 5 C 0.477 3.523 6 O -0.507 6.507 7 O -0.522 6.522 8 C -0.137 4.137 9 C 0.511 3.489 10 O -0.554 6.554 11 N -0.601 5.601 12 C 0.103 3.897 13 C -0.125 4.125 14 C 0.048 3.952 15 C -0.511 4.511 16 H 0.055 0.945 17 C 0.061 3.939 18 N -0.892 5.892 19 Si 0.890 3.110 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.284 1.284 23 C -0.123 4.123 24 C 0.111 3.889 25 H 0.065 0.935 26 H 0.044 0.956 27 H 0.079 0.921 28 H 0.107 0.893 29 H 0.108 0.892 30 H 0.408 0.592 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.105 0.895 36 H 0.038 0.962 37 H 0.027 0.973 38 H 0.260 0.740 39 H 0.059 0.941 40 H 0.051 0.949 41 H 0.058 0.942 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.789 4.118 -16.271 16.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.082 4.082 3 H 0.106 0.894 4 C -0.149 4.149 5 C 0.320 3.680 6 O -0.395 6.395 7 O -0.334 6.334 8 C -0.176 4.176 9 C 0.300 3.700 10 O -0.433 6.433 11 N -0.334 5.334 12 C -0.019 4.019 13 C -0.164 4.164 14 C 0.030 3.970 15 C -0.549 4.549 16 H 0.073 0.927 17 C -0.140 4.140 18 N -0.531 5.531 19 Si 0.718 3.282 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.210 1.210 23 C -0.161 4.161 24 C -0.011 4.011 25 H 0.084 0.916 26 H 0.063 0.937 27 H 0.098 0.902 28 H 0.125 0.875 29 H 0.126 0.874 30 H 0.266 0.734 31 H 0.111 0.889 32 H 0.114 0.886 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.123 0.877 36 H 0.057 0.943 37 H 0.045 0.955 38 H 0.070 0.930 39 H 0.078 0.922 40 H 0.070 0.930 41 H 0.077 0.923 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.544 4.558 -15.916 16.628 hybrid contribution -0.498 -0.564 0.206 0.780 sum 1.046 3.994 -15.710 16.243 Atomic orbital electron populations 1.22084 0.93979 1.01324 1.04337 1.20711 0.97603 0.99907 0.90004 0.89443 1.21519 1.03936 1.00262 0.89215 1.23577 0.75814 0.84025 0.84631 1.90729 1.37060 1.24735 1.86930 1.84550 1.75038 1.56554 1.17250 1.21729 1.02693 1.00509 0.92713 1.20439 0.79464 0.85567 0.84579 1.90625 1.41025 1.25280 1.86383 1.48270 1.54638 1.24865 1.05582 1.21959 0.95251 0.84249 1.00456 1.21947 0.99249 0.99907 0.95260 1.18638 0.94993 0.90781 0.92616 1.21251 1.03545 1.04290 1.25788 0.92670 1.24958 0.94884 0.97867 0.96284 1.69844 1.14748 1.24141 1.44396 0.86564 0.79876 0.80742 0.80997 1.19840 1.21055 1.21050 1.22008 0.99225 0.97701 0.97184 1.21688 0.99296 0.95039 0.85057 0.91648 0.93668 0.90186 0.87525 0.87423 0.73361 0.88921 0.88568 0.91402 0.91980 0.87731 0.94280 0.95474 0.93044 0.92216 0.92994 0.92345 0.90363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.14 8.67 37.16 0.32 -1.81 16 2 C -0.06 -0.74 1.68 -90.62 -0.15 -0.90 16 3 H 0.09 1.20 7.77 -51.93 -0.40 0.80 16 4 C -0.11 -0.95 5.29 -27.88 -0.15 -1.09 16 5 C 0.48 4.73 8.05 36.01 0.29 5.02 16 6 O -0.51 -6.79 14.73 -18.75 -0.28 -7.07 16 7 O -0.52 -3.86 13.42 -39.26 -0.53 -4.38 16 8 C -0.14 -1.62 3.52 -27.88 -0.10 -1.72 16 9 C 0.51 8.40 7.42 -10.98 -0.08 8.32 16 10 O -0.55 -10.66 13.38 5.55 0.07 -10.59 16 11 N -0.60 -10.36 2.98 -173.00 -0.52 -10.88 16 12 C 0.10 1.73 6.32 -3.93 -0.02 1.70 16 13 C -0.13 -2.65 5.14 -26.83 -0.14 -2.79 16 14 C 0.05 1.12 2.07 -91.73 -0.19 0.93 16 15 C -0.51 -13.40 8.56 -34.44 -0.29 -13.69 16 16 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 17 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 18 N -0.89 -23.96 11.31 55.43 0.63 -23.33 16 19 Si 0.89 20.58 29.54 -169.99 -5.02 15.56 16 20 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 C -0.12 -2.49 5.30 -26.59 -0.14 -2.63 16 24 C 0.11 2.01 6.44 -3.69 -0.02 1.99 16 25 H 0.06 0.90 5.96 -51.93 -0.31 0.60 16 26 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.08 1.29 5.95 -51.93 -0.31 0.98 16 28 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.41 1.41 9.10 45.56 0.41 1.82 16 31 H 0.09 0.89 7.95 -51.93 -0.41 0.48 16 32 H 0.10 1.04 7.68 -51.93 -0.40 0.65 16 33 H 0.07 0.93 5.93 -51.93 -0.31 0.62 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.10 2.47 6.03 -51.93 -0.31 2.16 16 36 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 39 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.08 1.42 7.00 -51.93 -0.36 1.06 16 LS Contribution 333.13 15.07 5.02 5.02 Total: -1.00 -31.38 333.13 -7.14 -38.52 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -5.75 Total: 2.32 kcal Atomic # 6 Polarization: -4.38 SS G_CDS: -0.77 Total: -5.16 kcal Atomic # 7 Polarization: -34.32 SS G_CDS: 0.11 Total: -34.21 kcal Atomic # 8 Polarization: -21.32 SS G_CDS: -0.73 Total: -22.04 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.38 -7.14 -38.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609732684.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.672 kcal (2) G-P(sol) polarization free energy of solvation -31.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds