Wall clock time and date at job start Tue Mar 31 2020 06:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 5 5 C 1.50704 * 109.47137 * 295.00578 * 4 2 1 6 6 O 1.20823 * 120.00109 * 359.97438 * 5 4 2 7 7 O 1.34229 * 119.99792 * 179.97438 * 5 4 2 8 8 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 9 9 C 1.50707 * 109.46966 * 64.99950 * 8 2 1 10 10 O 1.21279 * 119.99998 * 0.02562 * 9 8 2 11 11 N 1.34778 * 119.99809 * 180.02562 * 9 8 2 12 12 C 1.46924 * 120.63289 * 359.72117 * 11 9 8 13 13 C 1.52765 * 109.00720 * 233.58639 * 12 11 9 14 14 C 1.53043 * 109.37983 * 305.58421 * 13 12 11 15 15 C 1.50703 * 109.44653 * 181.25647 * 14 13 12 16 16 H 1.08000 * 119.99968 * 239.94315 * 15 14 13 17 17 C 1.37876 * 120.00079 * 59.93740 * 15 14 13 18 18 N 1.31511 * 119.99983 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00004 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.46654 * 90.00279 * 19 17 15 21 21 H 1.48496 * 109.47301 * 210.00121 * 19 17 15 22 22 H 1.48502 * 109.47194 * 330.00679 * 19 17 15 23 23 C 1.53036 * 109.53859 * 61.24657 * 14 13 12 24 24 C 1.46930 * 120.63081 * 180.02562 * 11 9 8 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 28 28 H 1.09006 * 109.47194 * 55.00274 * 4 2 1 29 29 H 1.08997 * 109.47756 * 174.99755 * 4 2 1 30 30 H 0.96701 * 117.00311 * 180.02562 * 7 5 4 31 31 H 1.08996 * 109.47729 * 184.99759 * 8 2 1 32 32 H 1.09001 * 109.47563 * 305.00337 * 8 2 1 33 33 H 1.09001 * 109.58841 * 353.41649 * 12 11 9 34 34 H 1.08996 * 109.59106 * 113.84456 * 12 11 9 35 35 H 1.09001 * 109.56324 * 185.55282 * 13 12 11 36 36 H 1.08996 * 109.38898 * 65.51490 * 13 12 11 37 37 H 1.08997 * 109.45931 * 301.22014 * 14 13 12 38 38 H 0.97002 * 120.00287 * 179.97438 * 18 17 15 39 39 H 1.08996 * 109.50124 * 178.68321 * 23 14 13 40 40 H 1.08994 * 109.52650 * 58.59574 * 23 14 13 41 41 H 1.09000 * 109.58441 * 246.16073 * 24 11 9 42 42 H 1.09001 * 109.58296 * 6.43924 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6412 0.0572 2.4766 6 8 1.0139 1.0836 2.3637 7 8 1.9830 -0.3900 3.6952 8 6 2.0400 -0.7212 -1.2491 9 6 1.6414 0.0571 -2.4765 10 8 1.0117 1.0874 -2.3633 11 7 1.9846 -0.3920 -3.7001 12 6 2.7525 -1.6352 -3.8531 13 6 3.9917 -1.3534 -4.7008 14 6 3.5671 -0.7097 -6.0228 15 6 4.7858 -0.4593 -6.8732 16 1 5.0315 0.5460 -7.1821 17 6 5.5873 -1.5136 -7.2567 18 7 5.2880 -2.7378 -6.8808 19 14 7.0976 -1.2033 -8.3113 20 1 8.2704 -0.9541 -7.4351 21 1 7.3594 -2.3913 -9.1628 22 1 6.8636 -0.0176 -9.1743 23 6 2.8600 0.6181 -5.7417 24 6 1.6036 0.3560 -4.9061 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.6054 -1.7198 1.2952 29 1 3.1263 -0.7995 1.2057 30 1 1.7046 0.1431 4.4525 31 1 3.1263 -0.7994 -1.2055 32 1 1.6054 -1.7198 -1.2951 33 1 3.0576 -1.9993 -2.8721 34 1 2.1372 -2.3861 -4.3487 35 1 4.5158 -2.2875 -4.9028 36 1 4.6524 -0.6748 -4.1614 37 1 2.8873 -1.3786 -6.5505 38 1 5.8517 -3.4796 -7.1509 39 1 2.5787 1.0872 -6.6844 40 1 3.5307 1.2788 -5.1924 41 1 0.8925 -0.2289 -5.4893 42 1 1.1487 1.3042 -4.6194 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609732685.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:51 Heat of formation + Delta-G solvation = -151.193815 kcal Electronic energy + Delta-G solvation = -22763.636210 eV Core-core repulsion = 19321.694082 eV Total energy + Delta-G solvation = -3441.942128 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.60956 -39.74894 -37.19020 -36.46735 -35.17069 -33.53165 -31.44090 -30.21718 -29.02347 -27.67926 -25.99606 -23.31050 -22.61701 -22.11945 -20.36641 -19.58302 -18.41233 -18.05925 -17.10287 -16.63565 -16.24105 -16.10652 -15.39942 -15.20833 -14.57551 -14.28134 -13.61880 -13.49798 -13.17442 -12.99353 -12.88203 -12.68199 -12.43232 -12.29908 -11.91763 -11.81386 -11.60132 -11.31942 -11.17140 -11.06143 -10.95540 -10.80091 -10.66081 -10.49553 -10.38646 -10.12623 -9.66127 -9.31922 -9.19220 -8.93514 -8.40897 -7.99915 -6.06244 -4.12190 2.02101 2.79735 2.99926 3.26148 3.33419 3.37007 3.51459 4.38517 4.49463 4.74420 4.81362 4.97584 5.21860 5.24402 5.31220 5.37702 5.47709 5.63341 5.66894 5.80337 5.82693 5.94660 6.05654 6.09653 6.15263 6.27384 6.28354 6.36519 6.44081 6.55804 6.64623 6.88650 7.01852 7.12800 7.24695 7.63610 7.69593 7.88887 7.93809 8.00991 8.37383 8.58793 8.91255 9.53090 10.99268 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.028760 B = 0.003344 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.328712 B = 8371.358263 C = 8892.253510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.064 4.064 3 H 0.088 0.912 4 C -0.112 4.112 5 C 0.477 3.523 6 O -0.507 6.507 7 O -0.522 6.522 8 C -0.136 4.136 9 C 0.511 3.489 10 O -0.554 6.554 11 N -0.601 5.601 12 C 0.103 3.897 13 C -0.125 4.125 14 C 0.049 3.951 15 C -0.512 4.512 16 H 0.054 0.946 17 C 0.061 3.939 18 N -0.892 5.892 19 Si 0.890 3.110 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.275 1.275 23 C -0.123 4.123 24 C 0.111 3.889 25 H 0.043 0.957 26 H 0.079 0.921 27 H 0.065 0.935 28 H 0.107 0.893 29 H 0.108 0.892 30 H 0.408 0.592 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.105 0.895 36 H 0.038 0.962 37 H 0.027 0.973 38 H 0.260 0.740 39 H 0.059 0.941 40 H 0.051 0.949 41 H 0.058 0.942 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.016 -0.623 15.830 16.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.083 4.083 3 H 0.107 0.893 4 C -0.149 4.149 5 C 0.320 3.680 6 O -0.395 6.395 7 O -0.334 6.334 8 C -0.176 4.176 9 C 0.300 3.700 10 O -0.433 6.433 11 N -0.334 5.334 12 C -0.019 4.019 13 C -0.164 4.164 14 C 0.030 3.970 15 C -0.550 4.550 16 H 0.073 0.927 17 C -0.140 4.140 18 N -0.531 5.531 19 Si 0.719 3.281 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.200 1.200 23 C -0.161 4.161 24 C -0.011 4.011 25 H 0.062 0.938 26 H 0.098 0.902 27 H 0.084 0.916 28 H 0.125 0.875 29 H 0.126 0.874 30 H 0.266 0.734 31 H 0.113 0.887 32 H 0.112 0.888 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.123 0.877 36 H 0.057 0.943 37 H 0.045 0.955 38 H 0.070 0.930 39 H 0.078 0.922 40 H 0.070 0.930 41 H 0.077 0.923 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.333 -0.232 15.467 16.715 hybrid contribution 0.865 0.273 -0.122 0.915 sum -5.468 0.041 15.345 16.290 Atomic orbital electron populations 1.22078 0.94071 1.01132 1.04350 1.20716 0.97480 1.00078 0.90031 0.89350 1.21517 1.04063 1.00149 0.89208 1.23574 0.75792 0.84041 0.84632 1.90729 1.37133 1.24677 1.86928 1.84550 1.75009 1.56577 1.17246 1.21726 1.02966 1.00224 0.92710 1.20438 0.79488 0.85557 0.84558 1.90624 1.41342 1.25000 1.86347 1.48268 1.54071 1.25331 1.05681 1.21957 0.94752 0.84728 1.00473 1.21953 0.94260 1.04026 0.96150 1.18629 0.95082 0.90681 0.92588 1.21214 1.09260 0.93475 1.31027 0.92725 1.24954 0.97780 0.95158 0.96068 1.69828 1.38727 0.98667 1.45909 0.86617 0.83292 0.77743 0.80487 1.20735 1.21248 1.19967 1.21994 0.95301 1.00886 0.97964 1.21670 0.97851 0.96303 0.85244 0.93799 0.90222 0.91635 0.87498 0.87432 0.73356 0.88652 0.88834 0.91406 0.91972 0.87725 0.94289 0.95467 0.92981 0.92203 0.93004 0.92339 0.90367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.03 8.68 37.16 0.32 -1.71 16 2 C -0.06 -0.75 1.68 -90.63 -0.15 -0.90 16 3 H 0.09 1.25 7.77 -51.93 -0.40 0.85 16 4 C -0.11 -0.95 5.29 -27.88 -0.15 -1.10 16 5 C 0.48 4.76 8.05 36.01 0.29 5.05 16 6 O -0.51 -6.82 14.73 -18.75 -0.28 -7.10 16 7 O -0.52 -3.89 13.42 -39.26 -0.53 -4.42 16 8 C -0.14 -1.62 3.52 -27.88 -0.10 -1.72 16 9 C 0.51 8.40 7.42 -10.98 -0.08 8.32 16 10 O -0.55 -10.67 13.38 5.56 0.07 -10.59 16 11 N -0.60 -10.37 2.98 -173.05 -0.52 -10.88 16 12 C 0.10 1.73 6.31 -3.93 -0.02 1.70 16 13 C -0.13 -2.65 5.14 -26.83 -0.14 -2.79 16 14 C 0.05 1.13 2.07 -91.73 -0.19 0.94 16 15 C -0.51 -13.44 8.56 -34.44 -0.29 -13.73 16 16 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 17 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 18 N -0.89 -23.97 11.31 55.43 0.63 -23.34 16 19 Si 0.89 20.59 29.54 -169.99 -5.02 15.57 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 23 C -0.12 -2.50 5.30 -26.63 -0.14 -2.64 16 24 C 0.11 2.02 6.43 -3.73 -0.02 1.99 16 25 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.08 1.22 5.95 -51.93 -0.31 0.91 16 27 H 0.06 0.88 5.96 -51.93 -0.31 0.57 16 28 H 0.11 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.41 1.43 9.10 45.56 0.41 1.85 16 31 H 0.10 1.01 7.68 -51.93 -0.40 0.61 16 32 H 0.09 0.93 7.95 -51.93 -0.41 0.51 16 33 H 0.07 0.93 5.94 -51.93 -0.31 0.62 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.10 2.47 6.03 -51.93 -0.31 2.16 16 36 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 39 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 40 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.08 1.42 7.00 -51.93 -0.36 1.06 16 LS Contribution 333.13 15.07 5.02 5.02 Total: -1.00 -31.37 333.13 -7.14 -38.51 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -5.75 Total: 2.29 kcal Atomic # 6 Polarization: -4.28 SS G_CDS: -0.77 Total: -5.06 kcal Atomic # 7 Polarization: -34.34 SS G_CDS: 0.11 Total: -34.23 kcal Atomic # 8 Polarization: -21.38 SS G_CDS: -0.73 Total: -22.11 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.37 -7.14 -38.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609732685.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.683 kcal (2) G-P(sol) polarization free energy of solvation -31.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds