Wall clock time and date at job start Tue Mar 31 2020 06:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 5 5 C 1.50704 * 109.47137 * 295.00578 * 4 2 1 6 6 O 1.20823 * 120.00109 * 359.97438 * 5 4 2 7 7 O 1.34229 * 119.99792 * 179.97438 * 5 4 2 8 8 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 9 9 C 1.50707 * 109.46966 * 64.99950 * 8 2 1 10 10 O 1.21279 * 119.99998 * 0.02562 * 9 8 2 11 11 N 1.34778 * 119.99809 * 180.02562 * 9 8 2 12 12 C 1.46502 * 119.99848 * 179.97438 * 11 9 8 13 13 C 1.50705 * 109.46983 * 89.99957 * 12 11 9 14 14 H 1.08003 * 120.00107 * 0.02562 * 13 12 11 15 15 C 1.37870 * 120.00016 * 179.97438 * 13 12 11 16 16 N 1.31523 * 120.00060 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00109 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.46994 * 60.00342 * 17 15 13 19 19 H 1.48504 * 109.47319 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47366 * 300.00462 * 17 15 13 21 21 C 1.46498 * 120.00042 * 359.97438 * 11 9 8 22 22 C 1.53006 * 109.47131 * 90.00308 * 21 11 9 23 23 C 1.52994 * 117.49448 * 243.61967 * 22 21 11 24 24 C 1.52997 * 117.49834 * 174.99819 * 22 21 11 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 28 28 H 1.09006 * 109.47194 * 55.00274 * 4 2 1 29 29 H 1.08997 * 109.47756 * 174.99755 * 4 2 1 30 30 H 0.96701 * 117.00311 * 180.02562 * 7 5 4 31 31 H 1.08996 * 109.47729 * 184.99759 * 8 2 1 32 32 H 1.09001 * 109.47563 * 305.00337 * 8 2 1 33 33 H 1.08994 * 109.47046 * 209.99883 * 12 11 9 34 34 H 1.09001 * 109.46915 * 330.00262 * 12 11 9 35 35 H 0.96996 * 119.99889 * 179.97438 * 16 15 13 36 36 H 1.09003 * 109.47170 * 209.99923 * 21 11 9 37 37 H 1.08993 * 109.47260 * 329.99890 * 21 11 9 38 38 H 1.08996 * 115.54640 * 29.32608 * 22 21 11 39 39 H 1.08995 * 117.50482 * 359.97438 * 23 22 21 40 40 H 1.09000 * 117.49718 * 145.02083 * 23 22 21 41 41 H 1.09002 * 117.49663 * 214.97565 * 24 22 21 42 42 H 1.08999 * 117.49814 * 0.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6412 0.0572 2.4766 6 8 1.0139 1.0836 2.3637 7 8 1.9830 -0.3900 3.6952 8 6 2.0400 -0.7212 -1.2491 9 6 1.6414 0.0571 -2.4765 10 8 1.0117 1.0874 -2.3633 11 7 1.9846 -0.3920 -3.7001 12 6 1.5965 0.3643 -4.8933 13 6 2.6775 1.3584 -5.2315 14 1 3.5650 1.4203 -4.6192 15 6 2.5340 2.1881 -6.3233 16 7 1.4535 2.1124 -7.0693 17 14 3.8736 3.4208 -6.7421 18 1 5.1452 2.6999 -7.0040 19 1 3.4804 4.1873 -7.9517 20 1 4.0600 4.3554 -5.6032 21 6 2.7456 -1.6362 -3.8369 22 6 1.7780 -2.8154 -3.9566 23 6 1.8055 -3.8672 -2.8459 24 6 2.3778 -4.1969 -4.2260 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.6054 -1.7198 1.2952 29 1 3.1263 -0.7995 1.2057 30 1 1.7046 0.1431 4.4525 31 1 3.1263 -0.7994 -1.2055 32 1 1.6054 -1.7198 -1.2951 33 1 1.4590 -0.3214 -5.7293 34 1 0.6635 0.8938 -4.7004 35 1 1.3524 2.6963 -7.8371 36 1 3.3682 -1.5851 -4.7302 37 1 3.3786 -1.7732 -2.9603 38 1 0.8138 -2.5880 -4.4111 39 1 2.5132 -3.7195 -2.0301 40 1 0.8592 -4.3320 -2.5693 41 1 1.8079 -4.8785 -4.8574 42 1 3.4617 -4.2658 -4.3175 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609732759.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:19 Heat of formation + Delta-G solvation = -117.788618 kcal Electronic energy + Delta-G solvation = -22887.442658 eV Core-core repulsion = 19446.949089 eV Total energy + Delta-G solvation = -3440.493569 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.47255 -39.31118 -37.28975 -36.46782 -35.21970 -34.22046 -32.50960 -29.31923 -27.99620 -27.21027 -25.78779 -23.20609 -22.31249 -22.11016 -20.66945 -19.88290 -18.48944 -17.98936 -16.93279 -16.44865 -16.23563 -16.11931 -15.27119 -15.11370 -14.87298 -14.30609 -14.11661 -13.61533 -13.34970 -13.10180 -12.55236 -12.45190 -12.30471 -12.05854 -11.73368 -11.63678 -11.46761 -11.44004 -11.19560 -10.99096 -10.89658 -10.82110 -10.61273 -10.56533 -10.32754 -10.29985 -10.07498 -9.81094 -9.59513 -8.75969 -8.40594 -7.62826 -6.01751 -4.06361 2.13288 2.91703 3.33241 3.37994 3.40089 3.49069 3.81384 4.04517 4.46820 4.65624 4.87099 4.91667 4.98196 5.02991 5.09570 5.29649 5.32500 5.41453 5.46218 5.49509 5.60442 5.66643 5.73886 5.85469 5.87404 5.97004 6.04380 6.10245 6.16653 6.24598 6.43883 6.47641 6.55391 6.79545 7.10710 7.48231 7.58886 7.80342 7.94914 8.26527 8.47115 8.93402 9.16015 9.58787 11.06292 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.013716 B = 0.004817 C = 0.003862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.877591 B = 5811.664763 C = 7248.736964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.065 4.065 3 H 0.088 0.912 4 C -0.110 4.110 5 C 0.475 3.525 6 O -0.504 6.504 7 O -0.524 6.524 8 C -0.138 4.138 9 C 0.508 3.492 10 O -0.535 6.535 11 N -0.596 5.596 12 C 0.247 3.753 13 C -0.526 4.526 14 H 0.056 0.944 15 C 0.062 3.938 16 N -0.895 5.895 17 Si 0.897 3.103 18 H -0.277 1.277 19 H -0.286 1.286 20 H -0.277 1.277 21 C 0.143 3.857 22 C -0.164 4.164 23 C -0.186 4.186 24 C -0.177 4.177 25 H 0.041 0.959 26 H 0.082 0.918 27 H 0.063 0.937 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.407 0.593 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.031 0.969 34 H 0.043 0.957 35 H 0.263 0.737 36 H 0.086 0.914 37 H 0.067 0.933 38 H 0.108 0.892 39 H 0.093 0.907 40 H 0.089 0.911 41 H 0.091 0.909 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.712 -13.279 15.019 20.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.084 4.084 3 H 0.107 0.893 4 C -0.147 4.147 5 C 0.318 3.682 6 O -0.391 6.391 7 O -0.336 6.336 8 C -0.179 4.179 9 C 0.295 3.705 10 O -0.412 6.412 11 N -0.327 5.327 12 C 0.127 3.873 13 C -0.565 4.565 14 H 0.074 0.926 15 C -0.140 4.140 16 N -0.534 5.534 17 Si 0.725 3.275 18 H -0.203 1.203 19 H -0.212 1.212 20 H -0.202 1.202 21 C 0.018 3.982 22 C -0.184 4.184 23 C -0.223 4.223 24 C -0.215 4.215 25 H 0.060 0.940 26 H 0.101 0.899 27 H 0.082 0.918 28 H 0.123 0.877 29 H 0.123 0.877 30 H 0.265 0.735 31 H 0.104 0.896 32 H 0.109 0.891 33 H 0.049 0.951 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.104 0.896 37 H 0.085 0.915 38 H 0.126 0.874 39 H 0.111 0.889 40 H 0.108 0.892 41 H 0.109 0.891 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.228 -12.575 14.505 19.326 hybrid contribution 0.609 0.886 0.128 1.083 sum 2.837 -11.688 14.634 18.942 Atomic orbital electron populations 1.22063 0.94065 1.00927 1.04464 1.20717 0.97558 1.00148 0.89932 0.89334 1.21525 1.03769 1.00076 0.89368 1.23617 0.75912 0.84140 0.84570 1.90741 1.36927 1.24586 1.86859 1.84546 1.75119 1.56632 1.17283 1.21793 1.02066 1.00429 0.93564 1.20218 0.80274 0.85661 0.84382 1.90654 1.40225 1.24329 1.86005 1.48192 1.54021 1.22905 1.07627 1.19255 0.96867 0.90719 0.80418 1.21397 1.04503 1.19278 1.11276 0.92583 1.24922 0.95861 0.97149 0.96106 1.69925 1.26770 1.39271 1.17445 0.86581 0.81834 0.81364 0.77763 1.20289 1.21201 1.20209 1.21000 0.92307 0.82443 1.02442 1.22948 1.02129 0.90410 1.02870 1.23044 1.02645 1.04240 0.92325 1.22895 1.00760 0.98759 0.99056 0.94007 0.89925 0.91837 0.87703 0.87717 0.73460 0.89620 0.89102 0.95094 0.93917 0.92708 0.89607 0.91463 0.87434 0.88880 0.89220 0.89053 0.88775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.39 8.68 37.16 0.32 -2.07 16 2 C -0.06 -0.89 1.68 -90.63 -0.15 -1.05 16 3 H 0.09 1.49 7.77 -51.93 -0.40 1.08 16 4 C -0.11 -1.07 5.29 -27.88 -0.15 -1.22 16 5 C 0.48 5.33 8.05 36.01 0.29 5.62 16 6 O -0.50 -7.57 14.73 -18.75 -0.28 -7.85 16 7 O -0.52 -4.35 13.42 -39.26 -0.53 -4.88 16 8 C -0.14 -1.91 3.73 -27.88 -0.10 -2.01 16 9 C 0.51 10.19 7.39 -10.98 -0.08 10.11 16 10 O -0.53 -13.17 13.55 5.56 0.08 -13.10 16 11 N -0.60 -12.21 2.46 -175.05 -0.43 -12.64 16 12 C 0.25 6.38 5.16 -5.19 -0.03 6.36 16 13 C -0.53 -14.86 9.39 -34.44 -0.32 -15.18 16 14 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 15 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 16 N -0.90 -26.69 13.29 55.43 0.74 -25.96 16 17 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 21 C 0.14 2.22 5.49 -4.04 -0.02 2.20 16 22 C -0.16 -2.19 5.95 -90.62 -0.54 -2.73 16 23 C -0.19 -1.90 9.17 -26.74 -0.25 -2.14 16 24 C -0.18 -1.89 10.25 -26.73 -0.27 -2.16 16 25 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.08 1.53 5.95 -51.93 -0.31 1.23 16 27 H 0.06 0.99 5.96 -51.93 -0.31 0.68 16 28 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.41 1.79 9.10 45.56 0.41 2.21 16 31 H 0.09 1.00 7.40 -51.93 -0.38 0.62 16 32 H 0.09 1.06 6.84 -51.93 -0.36 0.70 16 33 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 34 H 0.04 1.26 7.42 -51.93 -0.39 0.87 16 35 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 36 H 0.09 1.42 8.07 -51.93 -0.42 1.00 16 37 H 0.07 0.86 6.17 -51.93 -0.32 0.54 16 38 H 0.11 1.65 8.14 -51.93 -0.42 1.22 16 39 H 0.09 0.82 7.87 -51.93 -0.41 0.41 16 40 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 347.73 15.07 5.24 5.24 Total: -1.00 -35.03 347.73 -7.41 -42.44 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -5.80 Total: 2.42 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: -1.40 Total: -2.61 kcal Atomic # 7 Polarization: -38.91 SS G_CDS: 0.31 Total: -38.60 kcal Atomic # 8 Polarization: -25.10 SS G_CDS: -0.73 Total: -25.83 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -35.03 -7.41 -42.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609732759.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.347 kcal (2) G-P(sol) polarization free energy of solvation -35.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds