Wall clock time and date at job start Tue Mar 31 2020 05:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.46497 * 120.00073 * 2 1 4 4 C 1.50700 * 109.47595 * 270.00409 * 3 2 1 5 5 H 1.08001 * 119.99788 * 359.97438 * 4 3 2 6 6 C 1.37875 * 120.00467 * 179.97438 * 4 3 2 7 7 N 1.31522 * 119.99725 * 0.02562 * 6 4 3 8 8 Si 1.86796 * 120.00421 * 179.97438 * 6 4 3 9 9 H 1.48507 * 109.46738 * 59.99952 * 8 6 4 10 10 H 1.48501 * 109.47252 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47226 * 300.00506 * 8 6 4 12 12 C 1.34778 * 120.00179 * 180.02562 * 2 1 3 13 13 O 1.21282 * 120.00135 * 179.97438 * 12 2 1 14 14 C 1.50708 * 119.99836 * 359.97438 * 12 2 1 15 15 C 1.52992 * 109.47247 * 176.05901 * 14 12 2 16 16 C 1.53007 * 110.01929 * 65.40608 * 15 14 12 17 17 C 1.50699 * 109.47011 * 62.34737 * 16 15 14 18 18 O 1.20826 * 120.00065 * 5.68389 * 17 16 15 19 19 O 1.34224 * 120.00024 * 185.67921 * 17 16 15 20 20 C 1.54263 * 110.03511 * 186.80013 * 15 14 12 21 21 C 1.54957 * 104.16315 * 95.75217 * 20 15 14 22 22 C 1.54895 * 102.77748 * 37.89046 * 21 20 15 23 23 C 1.53882 * 110.03132 * 304.01809 * 15 14 12 24 24 H 1.08999 * 109.47357 * 269.99536 * 1 2 3 25 25 H 1.09005 * 109.47383 * 29.99493 * 1 2 3 26 26 H 1.09003 * 109.47601 * 149.99765 * 1 2 3 27 27 H 1.09002 * 109.47140 * 30.00880 * 3 2 1 28 28 H 1.09005 * 109.47176 * 150.00206 * 3 2 1 29 29 H 0.97001 * 119.99684 * 180.02562 * 7 6 4 30 30 H 1.08998 * 109.47336 * 56.05622 * 14 12 2 31 31 H 1.08995 * 109.46662 * 296.05950 * 14 12 2 32 32 H 1.08998 * 109.47500 * 182.35310 * 16 15 14 33 33 H 1.09007 * 109.46645 * 302.35073 * 16 15 14 34 34 H 0.96698 * 117.00049 * 180.02562 * 19 17 16 35 35 H 1.09004 * 110.48545 * 214.40488 * 20 15 14 36 36 H 1.09002 * 110.48266 * 337.04483 * 20 15 14 37 37 H 1.08996 * 110.72512 * 279.57755 * 21 20 15 38 38 H 1.09002 * 110.76892 * 156.22212 * 21 20 15 39 39 H 1.09001 * 110.48596 * 203.40782 * 22 21 20 40 40 H 1.08997 * 110.48383 * 80.75910 * 22 21 20 41 41 H 1.09000 * 110.03169 * 359.94895 * 23 15 14 42 42 H 1.08997 * 110.03165 * 121.38289 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4486 1.7039 -1.4208 5 1 2.0980 1.0959 -2.2417 6 6 3.1259 2.8781 -1.6727 7 7 3.5532 3.6181 -0.6730 8 14 3.4378 3.4171 -3.4338 9 1 2.1404 3.5939 -4.1344 10 1 4.1802 4.7032 -3.4337 11 1 4.2411 2.3824 -4.1333 12 6 2.1388 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3853 -2.4724 -0.0005 15 6 2.3765 -3.6335 -0.1003 16 6 3.2485 -3.6872 1.1558 17 6 2.3794 -3.9429 2.3601 18 8 1.2015 -4.1711 2.2176 19 8 2.9138 -3.9171 3.5911 20 6 1.6158 -4.9644 -0.2728 21 6 1.6052 -5.1994 -1.8044 22 6 3.0068 -4.7018 -2.2370 23 6 3.2604 -3.4662 -1.3488 24 1 -0.3634 -0.0001 1.0276 25 1 -0.3634 0.8901 -0.5138 26 1 -0.3634 -0.8900 -0.5139 27 1 1.6084 2.0283 0.5140 28 1 3.1499 1.1383 0.5138 29 1 4.0294 4.4444 -0.8502 30 1 0.7064 -2.5000 -0.8528 31 1 0.8131 -2.5614 0.9229 32 1 3.9785 -4.4907 1.0573 33 1 3.7684 -2.7370 1.2780 34 1 2.3169 -4.0873 4.3325 35 1 2.1425 -5.7733 0.2335 36 1 0.5981 -4.8740 0.1071 37 1 0.8220 -4.6089 -2.2798 38 1 1.4840 -6.2584 -2.0322 39 1 3.0035 -4.4204 -3.2900 40 1 3.7586 -5.4681 -2.0482 41 1 2.9826 -2.5582 -1.8840 42 1 4.3105 -3.4233 -1.0597 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040215564.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:21 Heat of formation + Delta-G solvation = -142.939467 kcal Electronic energy + Delta-G solvation = -23807.377821 eV Core-core repulsion = 20365.793629 eV Total energy + Delta-G solvation = -3441.584192 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.82337 -39.25347 -37.68984 -35.98934 -34.76824 -32.64649 -32.10595 -29.21524 -28.52969 -27.48353 -25.87594 -25.07458 -22.58810 -21.69194 -20.62561 -19.04064 -18.11259 -17.87458 -16.59511 -16.51135 -16.08972 -15.86808 -15.23715 -14.90331 -14.74013 -14.53424 -14.03150 -13.39361 -13.15347 -13.03531 -12.90073 -12.33719 -12.15883 -11.90296 -11.80785 -11.49324 -11.36217 -11.20622 -11.18051 -10.93046 -10.85458 -10.68862 -10.63801 -10.51000 -10.43818 -10.25683 -10.15667 -10.07872 -9.61205 -8.71256 -8.42398 -7.59779 -6.03286 -4.08034 2.28938 3.15251 3.32061 3.36448 3.38499 3.49927 4.02238 4.45402 4.62399 4.68966 4.82376 5.20987 5.25699 5.28119 5.35083 5.46604 5.52729 5.63197 5.65327 5.68382 5.77078 5.81494 5.90806 5.98098 6.04347 6.09802 6.12574 6.24675 6.26521 6.29873 6.38062 6.56186 6.60508 6.70098 7.08799 7.45778 7.57125 7.93141 7.96419 8.24924 8.46464 8.91510 9.13629 9.57071 11.04703 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.018939 B = 0.005138 C = 0.004588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.093466 B = 5447.778039 C = 6101.696025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.603 5.603 3 C 0.245 3.755 4 C -0.525 4.525 5 H 0.056 0.944 6 C 0.061 3.939 7 N -0.896 5.896 8 Si 0.897 3.103 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.502 3.498 13 O -0.541 6.541 14 C -0.138 4.138 15 C -0.026 4.026 16 C -0.114 4.114 17 C 0.479 3.521 18 O -0.516 6.516 19 O -0.519 6.519 20 C -0.108 4.108 21 C -0.127 4.127 22 C -0.128 4.128 23 C -0.103 4.103 24 H 0.043 0.957 25 H 0.073 0.927 26 H 0.058 0.942 27 H 0.030 0.970 28 H 0.044 0.956 29 H 0.263 0.737 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.102 0.898 33 H 0.130 0.870 34 H 0.404 0.596 35 H 0.059 0.941 36 H 0.077 0.923 37 H 0.065 0.935 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.074 0.926 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.849 -16.953 3.290 17.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.335 5.335 3 C 0.126 3.874 4 C -0.563 4.563 5 H 0.074 0.926 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.725 3.275 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.202 1.202 12 C 0.289 3.711 13 O -0.420 6.420 14 C -0.178 4.178 15 C -0.027 4.027 16 C -0.151 4.151 17 C 0.323 3.677 18 O -0.405 6.405 19 O -0.331 6.331 20 C -0.145 4.145 21 C -0.165 4.165 22 C -0.166 4.166 23 C -0.140 4.140 24 H 0.061 0.939 25 H 0.091 0.909 26 H 0.076 0.924 27 H 0.048 0.952 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.106 0.894 31 H 0.115 0.885 32 H 0.120 0.880 33 H 0.148 0.852 34 H 0.262 0.738 35 H 0.078 0.922 36 H 0.096 0.904 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.092 0.908 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.168 -16.720 2.966 17.485 hybrid contribution -0.362 0.413 -0.425 0.695 sum -4.530 -16.308 2.541 17.115 Atomic orbital electron populations 1.21637 0.81582 1.02536 1.00367 1.48179 1.06128 1.07983 1.71198 1.19266 0.92507 0.78224 0.97423 1.21386 1.36472 1.06209 0.92277 0.92583 1.24933 0.95399 0.96401 0.97362 1.69929 1.38424 1.14346 1.30756 0.86570 0.78342 0.77826 0.84745 1.20290 1.21185 1.20184 1.20433 0.88226 0.85202 0.77210 1.90592 1.13769 1.87113 1.50485 1.22015 0.98963 0.92372 1.04473 1.20713 0.94065 0.94432 0.93476 1.21843 0.98032 1.06912 0.88353 1.23847 0.87801 0.71726 0.84350 1.90645 1.18007 1.45339 1.86526 1.84592 1.47304 1.83823 1.17365 1.22498 1.01141 0.95425 0.95482 1.22547 0.97467 1.00314 0.96140 1.22438 0.96749 0.97844 0.99552 1.22168 0.99911 0.97915 0.94031 0.93888 0.90859 0.92377 0.95230 0.93840 0.92696 0.89384 0.88503 0.87982 0.85179 0.73769 0.92178 0.90437 0.91601 0.92037 0.91902 0.92058 0.90758 0.91050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.37 10.26 59.84 0.61 1.99 16 2 N -0.60 -12.89 2.86 -182.95 -0.52 -13.41 16 3 C 0.25 6.44 5.16 -5.20 -0.03 6.41 16 4 C -0.52 -14.87 9.39 -34.44 -0.32 -15.19 16 5 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 6 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 7 N -0.90 -26.67 13.29 55.43 0.74 -25.94 16 8 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 12 C 0.50 10.15 6.69 -10.98 -0.07 10.08 16 13 O -0.54 -12.48 12.06 5.56 0.07 -12.41 16 14 C -0.14 -2.14 2.98 -27.88 -0.08 -2.23 16 15 C -0.03 -0.36 0.33 -153.39 -0.05 -0.42 16 16 C -0.11 -1.55 4.28 -27.88 -0.12 -1.67 16 17 C 0.48 6.33 7.68 36.00 0.28 6.60 16 18 O -0.52 -7.46 13.03 -18.75 -0.24 -7.70 16 19 O -0.52 -5.79 13.42 -39.24 -0.53 -6.32 16 20 C -0.11 -1.29 4.46 -25.04 -0.11 -1.40 16 21 C -0.13 -1.38 6.91 -24.70 -0.17 -1.55 16 22 C -0.13 -1.50 6.83 -25.07 -0.17 -1.67 16 23 C -0.10 -1.50 4.67 -25.61 -0.12 -1.62 16 24 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.07 1.24 8.07 -51.93 -0.42 0.82 16 26 H 0.06 0.81 6.33 -51.93 -0.33 0.48 16 27 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 28 H 0.04 1.28 7.42 -51.93 -0.39 0.89 16 29 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 30 H 0.09 1.26 7.19 -51.93 -0.37 0.89 16 31 H 0.10 1.49 5.89 -51.93 -0.31 1.19 16 32 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.13 2.12 5.86 -51.92 -0.30 1.81 16 34 H 0.40 2.68 9.10 45.56 0.41 3.09 16 35 H 0.06 0.68 7.83 -51.93 -0.41 0.27 16 36 H 0.08 0.98 6.96 -51.93 -0.36 0.61 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.07 1.30 6.69 -51.93 -0.35 0.95 16 42 H 0.07 1.07 7.67 -51.93 -0.40 0.67 16 LS Contribution 332.68 15.07 5.01 5.01 Total: -1.00 -33.03 332.68 -6.67 -39.70 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -5.72 Total: 3.24 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: -0.46 Total: 0.98 kcal Atomic # 7 Polarization: -39.56 SS G_CDS: 0.21 Total: -39.35 kcal Atomic # 8 Polarization: -25.73 SS G_CDS: -0.70 Total: -26.43 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -33.03 -6.67 -39.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040215564.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.243 kcal (2) G-P(sol) polarization free energy of solvation -33.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds