Wall clock time and date at job start Tue Mar 31 2020 06:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47132 * 2 1 4 4 N 1.46901 * 109.47689 * 120.00240 * 2 1 3 5 5 C 1.46892 * 110.99880 * 307.33330 * 4 2 1 6 6 C 1.50701 * 109.47407 * 287.35215 * 5 4 2 7 7 H 1.08000 * 119.99665 * 356.46794 * 6 5 4 8 8 C 1.37875 * 120.00027 * 176.47836 * 6 5 4 9 9 N 1.31513 * 120.00163 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 119.99812 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46984 * 89.99448 * 10 8 6 12 12 H 1.48492 * 109.47159 * 209.99600 * 10 8 6 13 13 H 1.48506 * 109.47024 * 329.99912 * 10 8 6 14 14 C 1.46902 * 110.99341 * 71.28602 * 4 2 1 15 15 C 1.50694 * 109.47483 * 75.16483 * 14 4 2 16 16 C 1.36126 * 120.17158 * 254.32589 * 15 14 4 17 17 C 1.39332 * 120.99417 * 180.32520 * 16 15 14 18 18 C 1.36120 * 120.98796 * 359.91933 * 17 16 15 19 19 C 1.40503 * 119.65116 * 0.04873 * 18 17 16 20 20 C 1.40543 * 121.28208 * 180.02562 * 19 18 17 21 21 C 1.36083 * 119.65650 * 179.97438 * 20 19 18 22 22 C 1.39387 * 120.99171 * 0.03019 * 21 20 19 23 23 C 1.36094 * 120.98981 * 359.94918 * 22 21 20 24 24 C 1.40505 * 120.17348 * 74.59625 * 15 14 4 25 25 H 1.09006 * 109.46901 * 309.35784 * 1 2 3 26 26 H 1.09000 * 109.47422 * 69.35773 * 1 2 3 27 27 H 1.09007 * 109.46778 * 189.36248 * 1 2 3 28 28 H 1.09003 * 109.47410 * 240.00715 * 2 1 3 29 29 H 1.09001 * 109.46782 * 172.24487 * 3 2 1 30 30 H 1.09000 * 109.47151 * 292.25003 * 3 2 1 31 31 H 1.09005 * 109.46922 * 52.25298 * 3 2 1 32 32 H 1.09005 * 109.47642 * 47.35327 * 5 4 2 33 33 H 1.09000 * 109.47178 * 167.34937 * 5 4 2 34 34 H 0.96999 * 120.00081 * 180.02562 * 9 8 6 35 35 H 1.09002 * 109.47535 * 315.15805 * 14 4 2 36 36 H 1.09008 * 109.46888 * 195.16018 * 14 4 2 37 37 H 1.08000 * 119.50252 * 0.27046 * 16 15 14 38 38 H 1.08003 * 119.50601 * 179.97438 * 17 16 15 39 39 H 1.07996 * 120.17708 * 180.02562 * 18 17 16 40 40 H 1.08007 * 120.17309 * 359.96101 * 20 19 18 41 41 H 1.08003 * 119.50648 * 180.02562 * 21 20 19 42 42 H 1.07997 * 119.50457 * 179.97438 * 22 21 20 43 43 H 1.07997 * 120.16746 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0198 -0.6925 1.1994 5 6 1.4112 -0.1350 2.4145 6 6 2.0009 1.2233 2.6940 7 1 2.7929 1.6073 2.0681 8 6 1.5295 1.9758 3.7488 9 7 0.5649 1.5083 4.5107 10 14 2.2611 3.6593 4.0956 11 1 1.5042 4.6923 3.3438 12 1 2.1775 3.9452 5.5503 13 1 3.6832 3.6786 3.6682 14 6 1.7804 -2.1389 1.1066 15 6 2.7722 -2.7521 0.1520 16 6 2.3748 -3.1427 -1.0900 17 6 3.2758 -3.7177 -1.9838 18 6 4.5801 -3.9040 -1.6417 19 6 5.0275 -3.5127 -0.3686 20 6 6.3665 -3.6885 0.0203 21 6 6.7642 -3.2970 1.2614 22 6 5.8626 -2.7233 2.1563 23 6 4.5585 -2.5371 1.8144 24 6 4.1106 -2.9288 0.5412 25 1 -0.3633 0.6517 0.7946 26 1 -0.3634 0.3623 -0.9617 27 1 -0.3633 -1.0141 0.1672 28 1 1.8933 -0.5137 -0.8901 29 1 3.1211 1.4456 0.1387 30 1 1.7942 1.9148 -0.9511 31 1 1.5679 1.9948 0.8126 32 1 0.3346 -0.0413 2.2717 33 1 1.6095 -0.7976 3.2570 34 1 0.2331 2.0378 5.2526 35 1 0.7683 -2.3172 0.7432 36 1 1.8975 -2.5905 2.0918 37 1 1.3454 -3.0058 -1.3867 38 1 2.9345 -4.0192 -2.9631 39 1 5.2673 -4.3505 -2.3450 40 1 7.0763 -4.1323 -0.6623 41 1 7.7939 -3.4329 1.5576 42 1 6.2040 -2.4217 3.1355 43 1 3.8714 -2.0909 2.5181 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042530717.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:05 Heat of formation + Delta-G solvation = 49.623795 kcal Electronic energy + Delta-G solvation = -22524.998785 eV Core-core repulsion = 19534.906777 eV Total energy + Delta-G solvation = -2990.092008 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.23686 -37.81048 -36.12785 -33.29502 -32.47489 -30.58831 -29.99160 -29.22783 -27.39804 -26.20868 -24.54115 -22.92733 -22.69644 -22.14286 -20.46390 -18.56566 -17.25514 -16.73982 -16.21798 -15.93420 -15.18248 -14.69520 -14.40317 -14.02484 -13.91306 -13.36468 -13.21386 -13.14608 -12.94302 -12.62356 -12.23854 -12.16307 -11.55796 -11.47635 -11.32734 -11.15710 -11.07139 -10.80210 -10.76631 -10.70643 -10.59081 -10.35595 -10.26992 -10.13527 -9.52004 -9.33505 -8.97270 -8.37894 -8.32847 -7.56075 -7.16910 -6.00787 -3.97484 0.82942 1.29644 2.35434 3.26836 3.31637 3.38903 3.43092 4.36389 4.46356 4.83638 4.95851 5.06456 5.13755 5.25575 5.30914 5.33468 5.45292 5.60868 5.67778 5.71234 5.75898 5.85961 5.92295 5.97844 6.11965 6.19149 6.30212 6.36952 6.39997 6.49619 6.54236 6.58587 6.63975 6.73022 6.77999 6.81094 7.00021 7.02535 7.15665 7.25321 7.31002 7.43732 7.50689 7.86486 8.14050 8.23180 8.57573 9.07762 9.62547 11.09625 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.017855 B = 0.005503 C = 0.004674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.771115 B = 5087.132276 C = 5989.644701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.092 3.908 3 C -0.146 4.146 4 N -0.522 5.522 5 C 0.185 3.815 6 C -0.499 4.499 7 H 0.075 0.925 8 C 0.053 3.947 9 N -0.900 5.900 10 Si 0.890 3.110 11 H -0.282 1.282 12 H -0.288 1.288 13 H -0.273 1.273 14 C 0.081 3.919 15 C -0.036 4.036 16 C -0.130 4.130 17 C -0.111 4.111 18 C -0.123 4.123 19 C -0.050 4.050 20 C -0.124 4.124 21 C -0.112 4.112 22 C -0.134 4.134 23 C -0.070 4.070 24 C -0.036 4.036 25 H 0.072 0.928 26 H 0.044 0.956 27 H 0.043 0.957 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.026 0.974 31 H 0.097 0.903 32 H 0.007 0.993 33 H 0.022 0.978 34 H 0.259 0.741 35 H 0.039 0.961 36 H 0.078 0.922 37 H 0.116 0.884 38 H 0.116 0.884 39 H 0.119 0.881 40 H 0.119 0.881 41 H 0.116 0.884 42 H 0.120 0.880 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.283 -10.171 -9.993 15.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.016 4.016 3 C -0.203 4.203 4 N -0.246 5.246 5 C 0.060 3.940 6 C -0.538 4.538 7 H 0.093 0.907 8 C -0.148 4.148 9 N -0.540 5.540 10 Si 0.718 3.282 11 H -0.208 1.208 12 H -0.214 1.214 13 H -0.198 1.198 14 C -0.046 4.046 15 C -0.036 4.036 16 C -0.149 4.149 17 C -0.129 4.129 18 C -0.141 4.141 19 C -0.051 4.051 20 C -0.142 4.142 21 C -0.130 4.130 22 C -0.152 4.152 23 C -0.088 4.088 24 C -0.036 4.036 25 H 0.091 0.909 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.045 0.955 31 H 0.115 0.885 32 H 0.025 0.975 33 H 0.040 0.960 34 H 0.069 0.931 35 H 0.057 0.943 36 H 0.096 0.904 37 H 0.134 0.866 38 H 0.134 0.866 39 H 0.137 0.863 40 H 0.137 0.863 41 H 0.134 0.866 42 H 0.138 0.862 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 6.680 -10.034 -9.776 15.520 hybrid contribution -0.546 0.817 0.167 0.997 sum 6.134 -9.217 -9.609 14.660 Atomic orbital electron populations 1.22442 0.98775 1.01228 1.01584 1.21405 0.91753 0.95832 0.92653 1.22249 1.01559 0.95633 1.00842 1.62398 1.59136 0.99124 1.03977 1.19884 0.93694 0.95146 0.85243 1.21414 1.19171 1.00796 1.12420 0.90734 1.24970 0.95362 0.98251 0.96179 1.69955 1.27728 1.37812 1.18486 0.86614 0.79722 0.84521 0.77320 1.20806 1.21415 1.19784 1.21107 0.94426 0.91399 0.97716 1.19894 0.93619 0.95292 0.94842 1.20698 0.99696 1.00776 0.93732 1.20733 0.93626 0.99323 0.99194 1.20876 0.96094 1.01661 0.95497 1.18081 0.93653 0.99167 0.94149 1.20873 0.94616 1.01862 0.96850 1.20808 0.99334 0.98736 0.94090 1.20860 0.93871 1.00574 0.99917 1.21313 0.96268 0.95646 0.95541 1.17930 0.92903 0.98532 0.94264 0.90886 0.93731 0.93768 0.92521 0.92920 0.95473 0.88480 0.97527 0.96000 0.93089 0.94275 0.90397 0.86551 0.86580 0.86290 0.86301 0.86617 0.86234 0.84305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.28 8.26 37.16 0.31 -2.98 16 2 C 0.09 1.76 2.82 -67.71 -0.19 1.57 16 3 C -0.15 -2.90 7.71 37.16 0.29 -2.61 16 4 N -0.52 -10.66 4.17 -229.52 -0.96 -11.61 16 5 C 0.19 4.50 4.47 -4.98 -0.02 4.48 16 6 C -0.50 -13.14 6.65 -34.44 -0.23 -13.37 16 7 H 0.07 1.96 5.46 -52.49 -0.29 1.67 16 8 C 0.05 1.45 5.46 -17.82 -0.10 1.35 16 9 N -0.90 -25.84 13.29 55.43 0.74 -25.11 16 10 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 13 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 14 C 0.08 1.44 4.18 -4.98 -0.02 1.42 16 15 C -0.04 -0.59 4.80 -104.53 -0.50 -1.09 16 16 C -0.13 -1.87 8.88 -39.93 -0.35 -2.23 16 17 C -0.11 -1.41 9.95 -39.94 -0.40 -1.81 16 18 C -0.12 -1.60 9.77 -39.49 -0.39 -1.98 16 19 C -0.05 -0.75 5.74 -106.83 -0.61 -1.37 16 20 C -0.12 -1.63 9.77 -39.49 -0.39 -2.01 16 21 C -0.11 -1.45 9.95 -39.93 -0.40 -1.85 16 22 C -0.13 -1.97 9.95 -39.92 -0.40 -2.37 16 23 C -0.07 -1.18 9.25 -39.49 -0.37 -1.54 16 24 C -0.04 -0.60 5.74 -106.83 -0.61 -1.21 16 25 H 0.07 1.52 6.56 -51.93 -0.34 1.18 16 26 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.04 0.76 6.28 -51.93 -0.33 0.43 16 28 H 0.06 1.03 6.83 -51.93 -0.35 0.68 16 29 H 0.05 1.08 7.56 -51.93 -0.39 0.69 16 30 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.10 2.18 5.37 -51.93 -0.28 1.91 16 32 H 0.01 0.18 5.71 -51.93 -0.30 -0.12 16 33 H 0.02 0.57 7.67 -51.93 -0.40 0.17 16 34 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 35 H 0.04 0.67 5.94 -51.93 -0.31 0.36 16 36 H 0.08 1.40 6.83 -51.92 -0.35 1.04 16 37 H 0.12 1.52 7.96 -52.49 -0.42 1.10 16 38 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 39 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 40 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 41 H 0.12 1.19 8.06 -52.48 -0.42 0.77 16 42 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 43 H 0.14 2.54 6.60 -52.49 -0.35 2.19 16 LS Contribution 335.34 15.07 5.05 5.05 Total: -1.00 -28.43 335.34 -10.76 -39.19 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -6.20 Total: 3.92 kcal Atomic # 6 Polarization: -23.22 SS G_CDS: -4.38 Total: -27.60 kcal Atomic # 7 Polarization: -36.50 SS G_CDS: -0.22 Total: -36.72 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -28.43 -10.76 -39.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042530717.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.813 kcal (2) G-P(sol) polarization free energy of solvation -28.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds